Wall clock time and date at job start Tue Mar 31 2020 07:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47125 * 2 1 4 4 C 1.53001 * 109.47104 * 240.00249 * 2 1 3 5 5 C 1.50696 * 109.47274 * 60.00086 * 4 2 1 6 6 H 1.08007 * 119.99927 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00173 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00029 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00013 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47202 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47222 * 119.99780 * 9 7 5 12 12 H 1.48508 * 109.46869 * 239.99605 * 9 7 5 13 13 C 1.53002 * 109.47483 * 119.99889 * 2 1 3 14 14 N 1.46895 * 109.47097 * 300.00397 * 13 2 1 15 15 C 1.46904 * 110.99766 * 179.97438 * 14 13 2 16 16 C 1.50705 * 109.46803 * 180.02562 * 15 14 13 17 17 C 1.34331 * 125.80755 * 94.99921 * 16 15 14 18 18 N 1.38926 * 107.12220 * 179.73806 * 17 16 15 19 19 C 1.37486 * 139.53714 * 180.21625 * 18 17 16 20 20 C 1.30909 * 116.32362 * 180.02562 * 19 18 17 21 21 S 1.75773 * 109.81852 * 359.97438 * 20 19 18 22 22 C 1.35147 * 106.52943 * 0.24591 * 18 17 16 23 23 N 1.32356 * 108.82339 * 359.97438 * 22 18 17 24 24 H 1.09001 * 109.47163 * 299.99829 * 1 2 3 25 25 H 1.08995 * 109.47319 * 59.99945 * 1 2 3 26 26 H 1.09003 * 109.47181 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46891 * 179.97438 * 3 2 1 28 28 H 1.08995 * 109.47067 * 300.00209 * 3 2 1 29 29 H 1.09001 * 109.46961 * 60.00047 * 3 2 1 30 30 H 1.09005 * 109.46924 * 179.97438 * 4 2 1 31 31 H 1.08994 * 109.47252 * 299.99515 * 4 2 1 32 32 H 0.96991 * 119.99819 * 180.02562 * 8 7 5 33 33 H 1.08993 * 109.47174 * 179.97438 * 13 2 1 34 34 H 1.09004 * 109.46794 * 60.00314 * 13 2 1 35 35 H 1.00904 * 111.00424 * 56.04163 * 14 13 2 36 36 H 1.08992 * 109.47384 * 60.00201 * 15 14 13 37 37 H 1.08996 * 109.47060 * 299.99431 * 15 14 13 38 38 H 1.08002 * 126.44106 * 0.02562 * 17 16 15 39 39 H 1.08003 * 121.83610 * 0.04928 * 19 18 17 40 40 H 1.08004 * 125.08820 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8703 -0.4821 -3.7320 8 7 2.6264 -1.5514 -3.8527 9 14 1.2471 0.3982 -5.2572 10 1 0.4216 1.5646 -4.8529 11 1 2.4017 0.8648 -6.0660 12 1 0.4218 -0.5355 -6.0650 13 6 2.0400 -0.7212 1.2492 14 7 1.5503 -0.0288 2.4486 15 6 2.0210 -0.6953 3.6703 16 6 1.4993 0.0413 4.8771 17 6 0.3851 -0.2633 5.5628 18 7 0.2768 0.6577 6.5973 19 6 -0.5559 0.9551 7.6501 20 6 -0.2155 1.9820 8.3873 21 16 1.2700 2.6916 7.7712 22 6 1.3373 1.4879 6.4855 23 7 2.0663 1.1121 5.4467 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 3.1300 -0.7208 -1.2495 31 1 1.6767 -1.7488 -1.2493 32 1 2.8607 -1.8827 -4.7337 33 1 3.1300 -0.7216 1.2490 34 1 1.6767 -1.7489 1.2492 35 1 0.5438 0.0413 2.4402 36 1 3.1108 -0.6954 3.6873 37 1 1.6572 -1.7226 3.6869 38 1 -0.2959 -1.0748 5.3525 39 1 -1.4419 0.3734 7.8577 40 1 -0.7652 2.3396 9.2454 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266242092.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:55 Heat of formation + Delta-G solvation = 89.000345 kcal Electronic energy + Delta-G solvation = -20529.418127 eV Core-core repulsion = 17472.022560 eV Total energy + Delta-G solvation = -3057.395567 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.81343 -37.78610 -36.84113 -34.23846 -32.17675 -30.96975 -29.78824 -27.03711 -26.27756 -26.09415 -24.31947 -24.19940 -22.10365 -21.00971 -20.49883 -18.61018 -17.81810 -16.29026 -16.23033 -16.14869 -15.56144 -14.83400 -14.77174 -14.63347 -14.12465 -13.95757 -13.50393 -13.04709 -12.66807 -12.60318 -12.06279 -11.91847 -11.87373 -11.61728 -11.58345 -10.94134 -10.82177 -10.73123 -10.70751 -10.44081 -10.22126 -10.21342 -10.06245 -9.62286 -9.11835 -8.91533 -8.76434 -8.27811 -8.03322 -7.93523 -5.92310 -3.91922 0.61360 0.62658 1.32182 1.95162 2.29274 2.68564 3.35327 3.43100 3.46964 4.13178 4.32796 4.51206 4.62828 4.78327 4.81858 5.06664 5.18597 5.43652 5.52250 5.65599 5.77612 5.83652 5.86893 6.05009 6.28178 6.32356 6.39926 6.57494 6.59921 6.75189 6.85722 6.90504 7.27079 7.28486 7.34121 7.44855 7.60529 7.72920 7.76913 7.91442 8.08618 8.53447 9.13742 9.70665 11.19476 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.039272 B = 0.002573 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.797514 B =10880.292301 C =11017.377172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.057 4.057 3 C -0.116 4.116 4 C 0.033 3.967 5 C -0.504 4.504 6 H 0.059 0.941 7 C 0.053 3.947 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 C 0.071 3.929 14 N -0.678 5.678 15 C 0.139 3.861 16 C 0.064 3.936 17 C -0.052 4.052 18 N -0.410 5.410 19 C 0.053 3.947 20 C -0.229 4.229 21 S 0.183 5.817 22 C 0.133 3.867 23 N -0.434 5.434 24 H 0.032 0.968 25 H 0.064 0.936 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.053 0.947 29 H 0.042 0.958 30 H 0.016 0.984 31 H 0.013 0.987 32 H 0.258 0.742 33 H 0.069 0.931 34 H 0.024 0.976 35 H 0.338 0.662 36 H 0.089 0.911 37 H 0.045 0.955 38 H 0.182 0.818 39 H 0.180 0.820 40 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.330 3.838 26.788 28.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.058 4.058 3 C -0.173 4.173 4 C -0.005 4.005 5 C -0.543 4.543 6 H 0.077 0.923 7 C -0.147 4.147 8 N -0.538 5.538 9 Si 0.715 3.285 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.058 4.058 14 N -0.311 5.311 15 C 0.009 3.991 16 C -0.067 4.067 17 C -0.184 4.184 18 N -0.090 5.090 19 C -0.076 4.076 20 C -0.366 4.366 21 S 0.432 5.568 22 C -0.233 4.233 23 N -0.157 5.157 24 H 0.051 0.949 25 H 0.083 0.917 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.034 0.966 31 H 0.031 0.969 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.043 0.957 35 H 0.157 0.843 36 H 0.107 0.893 37 H 0.063 0.937 38 H 0.199 0.801 39 H 0.197 0.803 40 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -5.279 5.609 26.784 27.869 hybrid contribution -2.546 -1.999 -1.020 3.394 sum -7.825 3.610 25.764 27.167 Atomic orbital electron populations 1.21767 0.96192 1.00260 1.00379 1.20621 0.94642 0.96205 0.94320 1.21595 0.99856 0.95749 1.00131 1.19136 0.96197 0.94953 0.90171 1.21286 1.30570 1.11810 0.90607 0.92254 1.25018 0.95471 0.95140 0.99045 1.69977 1.37434 1.23278 1.23119 0.86614 0.78606 0.79719 0.83533 1.19787 1.21162 1.21244 1.22134 1.00032 0.94564 0.89043 1.60508 1.16278 1.53793 1.00493 1.20194 1.01057 0.92814 0.85077 1.20750 0.93149 0.94695 0.98145 1.22605 1.03924 0.99522 0.92361 1.43884 1.19452 1.23932 1.21771 1.20377 0.98036 1.00164 0.89071 1.25080 1.03190 1.01395 1.06945 1.84815 1.23076 1.28708 1.20226 1.26299 0.92061 1.00735 1.04249 1.70562 1.27629 1.12657 1.04862 0.94899 0.91746 0.94125 0.94109 0.92797 0.93857 0.96589 0.96892 0.93265 0.91301 0.95749 0.84324 0.89310 0.93748 0.80078 0.80262 0.78788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 7.89 37.15 0.29 -2.14 16 2 C -0.06 -1.17 0.60 -154.51 -0.09 -1.27 16 3 C -0.12 -2.37 8.06 37.16 0.30 -2.07 16 4 C 0.03 0.84 4.04 -27.88 -0.11 0.73 16 5 C -0.50 -13.98 7.65 -34.44 -0.26 -14.25 16 6 H 0.06 1.61 5.68 -52.48 -0.30 1.31 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 9 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 C 0.07 1.25 4.65 -3.83 -0.02 1.23 16 14 N -0.68 -10.55 5.70 -115.06 -0.66 -11.20 16 15 C 0.14 1.87 6.22 -4.97 -0.03 1.84 16 16 C 0.06 0.88 6.57 -83.08 -0.55 0.33 16 17 C -0.05 -0.58 11.93 -15.71 -0.19 -0.76 16 18 N -0.41 -4.43 3.19 -63.77 -0.20 -4.64 16 19 C 0.05 0.36 11.26 -16.71 -0.19 0.18 16 20 C -0.23 -1.28 11.11 29.04 0.32 -0.96 16 21 S 0.18 1.59 23.37 -107.50 -2.51 -0.92 16 22 C 0.13 1.72 8.93 -88.71 -0.79 0.93 16 23 N -0.43 -6.81 11.33 -9.77 -0.11 -6.92 16 24 H 0.03 0.54 6.57 -51.93 -0.34 0.20 16 25 H 0.06 1.32 6.62 -51.93 -0.34 0.98 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.05 1.16 6.62 -51.93 -0.34 0.82 16 29 H 0.04 0.83 7.60 -51.93 -0.39 0.43 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.34 5.02 6.76 -39.29 -0.27 4.76 16 36 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 37 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.18 1.43 8.06 -52.49 -0.42 1.01 16 39 H 0.18 0.60 8.06 -52.48 -0.42 0.18 16 40 H 0.20 0.35 8.06 -52.48 -0.42 -0.07 16 LS Contribution 339.56 15.07 5.12 5.12 Total: -1.00 -33.36 339.56 -9.84 -43.20 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -5.77 Total: -0.32 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: -1.41 Total: -14.78 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: -0.23 Total: -49.14 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: 1.59 SS G_CDS: -2.51 Total: -0.92 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.36 -9.84 -43.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266242092.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.197 kcal (2) G-P(sol) polarization free energy of solvation -33.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds