Wall clock time and date at job start Tue Mar 31 2020 06:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33876 * 125.80890 * 2 1 4 4 C 1.32354 * 109.13931 * 179.97438 * 3 2 1 5 5 S 1.76242 * 141.95454 * 180.02562 * 4 3 2 6 6 C 1.75781 * 90.70267 * 179.97438 * 5 4 3 7 7 C 1.30914 * 109.81575 * 359.97438 * 6 5 4 8 8 N 1.35146 * 108.82290 * 0.02562 * 4 3 2 9 9 C 1.34340 * 125.80594 * 179.97438 * 2 1 3 10 10 C 1.50703 * 126.43458 * 0.04213 * 9 2 1 11 11 N 1.46891 * 109.47353 * 269.99941 * 10 9 2 12 12 C 1.46906 * 110.99890 * 66.04952 * 11 10 9 13 13 C 1.46900 * 111.00181 * 190.00252 * 11 10 9 14 14 C 1.53001 * 109.47004 * 170.00401 * 13 11 10 15 15 C 1.53005 * 109.46955 * 179.97438 * 14 13 11 16 16 C 1.50696 * 109.47266 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99804 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00062 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99909 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99810 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47169 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.46881 * 119.99861 * 20 18 16 23 23 H 1.48500 * 109.46706 * 239.99475 * 20 18 16 24 24 H 1.09004 * 109.47160 * 90.02294 * 1 2 3 25 25 H 1.08993 * 109.47666 * 210.02269 * 1 2 3 26 26 H 1.09005 * 109.47127 * 330.03048 * 1 2 3 27 27 H 1.07998 * 125.08951 * 180.26420 * 6 5 4 28 28 H 1.08001 * 121.83225 * 179.97438 * 7 6 5 29 29 H 1.08998 * 109.47309 * 30.00740 * 10 9 2 30 30 H 1.09001 * 109.46576 * 150.00128 * 10 9 2 31 31 H 1.08999 * 109.46850 * 59.99808 * 12 11 10 32 32 H 1.09001 * 109.47301 * 179.97438 * 12 11 10 33 33 H 1.09001 * 109.46880 * 300.00160 * 12 11 10 34 34 H 1.09003 * 109.46864 * 290.00420 * 13 11 10 35 35 H 1.08995 * 109.46944 * 50.00204 * 13 11 10 36 36 H 1.09000 * 109.46865 * 299.99555 * 14 13 11 37 37 H 1.08995 * 109.47430 * 60.00101 * 14 13 11 38 38 H 1.08999 * 109.47463 * 300.00267 * 15 14 13 39 39 H 1.09008 * 109.46910 * 59.99715 * 15 14 13 40 40 H 0.96996 * 119.99564 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2903 1.0857 0.0000 4 6 3.5582 0.7060 0.0006 5 16 5.1994 1.3484 0.0015 6 6 5.8601 -0.2805 0.0023 7 6 4.8856 -1.1547 0.0024 8 7 3.6090 -0.6445 0.0004 9 6 2.2929 -1.0895 0.0005 10 6 1.8332 -2.5247 0.0002 11 7 1.6831 -2.9911 1.3850 12 6 0.5956 -2.2760 2.0663 13 6 1.4680 -4.4435 1.4311 14 6 1.5649 -4.9278 2.8792 15 6 1.3402 -6.4405 2.9272 16 6 1.4363 -6.9176 4.3534 17 1 1.6379 -6.2125 5.1462 18 6 1.2679 -8.2544 4.6459 19 7 1.0229 -9.1131 3.6804 20 14 1.3863 -8.8457 6.4139 21 1 1.6670 -7.6909 7.3043 22 1 0.1026 -9.4775 6.8116 23 1 2.4840 -9.8390 6.5311 24 1 -0.3634 -0.0004 -1.0277 25 1 -0.3634 -0.8897 0.5141 26 1 -0.3634 0.8903 0.5134 27 1 6.9123 -0.5236 0.0071 28 1 5.0743 -2.2181 0.0025 29 1 0.8752 -2.5993 -0.5143 30 1 2.5704 -3.1421 -0.5131 31 1 -0.3409 -2.4485 1.5359 32 1 0.5057 -2.6409 3.0895 33 1 0.8147 -1.2083 2.0788 34 1 0.4796 -4.6771 1.0352 35 1 2.2276 -4.9425 0.8294 36 1 2.5533 -4.6941 3.2750 37 1 0.8053 -4.4288 3.4808 38 1 0.3518 -6.6738 2.5314 39 1 2.0996 -6.9398 2.3253 40 1 0.9041 -10.0534 3.8863 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268486374.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:32 Heat of formation + Delta-G solvation = 91.692921 kcal Electronic energy + Delta-G solvation = -20792.133074 eV Core-core repulsion = 17734.854265 eV Total energy + Delta-G solvation = -3057.278808 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.83692 -37.87107 -36.77256 -33.86497 -32.10901 -31.42775 -30.61704 -28.32539 -27.03852 -25.98718 -24.43144 -23.68721 -21.66837 -20.67837 -19.94524 -19.85491 -18.15095 -16.59118 -16.27656 -16.07859 -15.25212 -15.15072 -14.94078 -14.74657 -14.37381 -13.90326 -13.58325 -13.41727 -13.04526 -12.60435 -12.50429 -12.34227 -11.94601 -11.74539 -11.68898 -11.50929 -11.36609 -11.19881 -10.86002 -10.61501 -10.57367 -10.48083 -10.19969 -9.65575 -9.38257 -9.08130 -8.84769 -8.36624 -8.21717 -7.75959 -6.01775 -4.03717 0.69308 0.73586 1.41562 2.05154 2.40183 2.66013 3.29869 3.37437 3.42048 4.11069 4.25177 4.45768 4.48416 4.72705 4.88903 4.91587 5.12399 5.27953 5.34188 5.35438 5.45564 5.48275 5.55957 5.66889 5.71891 5.78818 5.91321 6.08781 6.12950 6.25083 6.41891 6.64011 6.67282 6.72830 7.04824 7.22506 7.28878 7.59060 7.66153 7.80116 7.98549 8.42020 9.03676 9.60538 11.09698 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.023238 B = 0.002978 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.620430 B = 9400.579379 C =10054.733925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.048 3.952 3 N -0.455 5.455 4 C 0.135 3.865 5 S 0.174 5.826 6 C -0.229 4.229 7 C 0.065 3.935 8 N -0.396 5.396 9 C 0.001 3.999 10 C 0.127 3.873 11 N -0.540 5.540 12 C 0.018 3.982 13 C 0.056 3.944 14 C -0.104 4.104 15 C 0.022 3.978 16 C -0.518 4.518 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.896 5.896 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.196 0.804 28 H 0.183 0.817 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.028 0.972 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.032 0.968 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.049 0.951 38 H 0.014 0.986 39 H 0.015 0.985 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.219 19.011 -11.066 22.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.083 4.083 3 N -0.179 5.179 4 C -0.231 4.231 5 S 0.422 5.578 6 C -0.366 4.366 7 C -0.064 4.064 8 N -0.075 5.075 9 C -0.114 4.114 10 C -0.002 4.002 11 N -0.265 5.265 12 C -0.130 4.130 13 C -0.071 4.071 14 C -0.142 4.142 15 C -0.015 4.015 16 C -0.556 4.556 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.091 0.909 25 H 0.099 0.901 26 H 0.095 0.905 27 H 0.213 0.787 28 H 0.200 0.800 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.046 0.954 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.051 0.949 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.032 0.968 39 H 0.033 0.967 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.925 20.928 -10.850 24.570 hybrid contribution -0.794 -2.841 0.557 3.002 sum 6.131 18.087 -10.293 21.696 Atomic orbital electron populations 1.20386 0.86640 1.03845 1.02870 1.20524 0.96497 0.87002 1.04304 1.70470 0.96496 1.29552 1.21430 1.26112 1.00415 0.84168 1.12433 1.84661 0.87048 1.03680 1.82415 1.25032 1.03805 0.95267 1.12533 1.20446 0.80765 1.01768 1.03402 1.43639 1.05478 1.07406 1.50929 1.21018 0.79460 0.97271 1.13607 1.20428 1.00376 0.88076 0.91301 1.62082 1.45050 1.06045 1.13289 1.22627 0.91291 0.99026 1.00066 1.22338 0.99523 0.84751 1.00442 1.21658 1.00955 0.99304 0.92296 1.19075 0.96883 0.88539 0.97043 1.21284 1.48183 0.92897 0.93271 0.92642 1.25028 0.95348 0.96991 0.97147 1.69972 1.49307 1.02719 1.31604 0.86547 0.77625 0.78776 0.85139 1.19713 1.21017 1.21017 0.90922 0.90072 0.90516 0.78724 0.80027 0.92030 0.90091 0.95399 0.90476 0.91516 0.94924 0.91304 0.92725 0.93281 0.96771 0.96676 0.93084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 9.47 36.00 0.34 -0.49 16 2 C 0.05 0.65 6.15 -83.08 -0.51 0.14 16 3 N -0.46 -6.88 11.32 -9.77 -0.11 -6.99 16 4 C 0.13 1.83 8.92 -88.71 -0.79 1.04 16 5 S 0.17 1.65 23.37 -107.50 -2.51 -0.86 16 6 C -0.23 -1.76 11.11 29.04 0.32 -1.44 16 7 C 0.07 0.64 11.26 -16.71 -0.19 0.45 16 8 N -0.40 -5.10 3.19 -59.60 -0.19 -5.29 16 9 C 0.00 0.01 6.13 -80.75 -0.50 -0.48 16 10 C 0.13 1.58 5.19 -4.98 -0.03 1.56 16 11 N -0.54 -7.92 4.75 -244.37 -1.16 -9.08 16 12 C 0.02 0.24 7.78 60.07 0.47 0.71 16 13 C 0.06 0.93 4.96 -3.82 -0.02 0.91 16 14 C -0.10 -2.13 5.08 -26.73 -0.14 -2.26 16 15 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 16 C -0.52 -14.67 9.11 -34.44 -0.31 -14.99 16 17 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.90 -26.85 13.29 55.43 0.74 -26.12 16 20 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.08 0.79 4.56 -51.93 -0.24 0.56 16 26 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.20 0.79 8.06 -52.49 -0.42 0.37 16 28 H 0.18 1.42 8.06 -52.49 -0.42 1.00 16 29 H 0.06 0.70 7.74 -51.93 -0.40 0.29 16 30 H 0.08 0.94 7.93 -51.93 -0.41 0.53 16 31 H 0.03 0.34 7.06 -51.93 -0.37 -0.02 16 32 H 0.08 1.14 6.30 -51.93 -0.33 0.81 16 33 H 0.07 0.90 5.66 -51.93 -0.29 0.60 16 34 H 0.03 0.54 8.12 -51.93 -0.42 0.12 16 35 H 0.07 1.12 7.93 -51.93 -0.41 0.70 16 36 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.05 0.99 6.47 -51.93 -0.34 0.66 16 38 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.01 0.40 8.14 -51.92 -0.42 -0.02 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 337.05 15.07 5.08 5.08 Total: -1.00 -33.04 337.05 -10.47 -43.52 By element: Atomic # 1 Polarization: 1.73 SS G_CDS: -5.71 Total: -3.98 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -1.59 Total: -12.92 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: -0.73 Total: -47.48 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -2.51 Total: -0.86 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.04 -10.47 -43.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268486374.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.211 kcal (2) G-P(sol) polarization free energy of solvation -33.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds