Wall clock time and date at job start Tue Mar 31 2020 06:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33876 * 125.80890 * 2 1 4 4 C 1.32354 * 109.13931 * 179.97438 * 3 2 1 5 5 S 1.76242 * 141.95454 * 180.02562 * 4 3 2 6 6 C 1.75781 * 90.70267 * 179.97438 * 5 4 3 7 7 C 1.30914 * 109.81575 * 359.97438 * 6 5 4 8 8 N 1.35146 * 108.82290 * 0.02562 * 4 3 2 9 9 C 1.34340 * 125.80594 * 179.97438 * 2 1 3 10 10 C 1.50703 * 126.43458 * 0.04213 * 9 2 1 11 11 N 1.46891 * 109.47353 * 269.99941 * 10 9 2 12 12 C 1.46906 * 110.99890 * 66.04952 * 11 10 9 13 13 C 1.46900 * 111.00181 * 190.00252 * 11 10 9 14 14 C 1.53001 * 109.47004 * 170.00401 * 13 11 10 15 15 C 1.53005 * 109.46955 * 179.97438 * 14 13 11 16 16 C 1.50696 * 109.47266 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99804 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00062 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99909 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99810 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47169 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.46881 * 119.99861 * 20 18 16 23 23 H 1.48500 * 109.46706 * 239.99475 * 20 18 16 24 24 H 1.09004 * 109.47160 * 90.02294 * 1 2 3 25 25 H 1.08993 * 109.47666 * 210.02269 * 1 2 3 26 26 H 1.09005 * 109.47127 * 330.03048 * 1 2 3 27 27 H 1.07998 * 125.08951 * 180.26420 * 6 5 4 28 28 H 1.08001 * 121.83225 * 179.97438 * 7 6 5 29 29 H 1.08998 * 109.47309 * 30.00740 * 10 9 2 30 30 H 1.09001 * 109.46576 * 150.00128 * 10 9 2 31 31 H 1.08999 * 109.46850 * 59.99808 * 12 11 10 32 32 H 1.09001 * 109.47301 * 179.97438 * 12 11 10 33 33 H 1.09001 * 109.46880 * 300.00160 * 12 11 10 34 34 H 1.09003 * 109.46864 * 290.00420 * 13 11 10 35 35 H 1.08995 * 109.46944 * 50.00204 * 13 11 10 36 36 H 1.09000 * 109.46865 * 299.99555 * 14 13 11 37 37 H 1.08995 * 109.47430 * 60.00101 * 14 13 11 38 38 H 1.08999 * 109.47463 * 300.00267 * 15 14 13 39 39 H 1.09008 * 109.46910 * 59.99715 * 15 14 13 40 40 H 0.96996 * 119.99564 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2903 1.0857 0.0000 4 6 3.5582 0.7060 0.0006 5 16 5.1994 1.3484 0.0015 6 6 5.8601 -0.2805 0.0023 7 6 4.8856 -1.1547 0.0024 8 7 3.6090 -0.6445 0.0004 9 6 2.2929 -1.0895 0.0005 10 6 1.8332 -2.5247 0.0002 11 7 1.6831 -2.9911 1.3850 12 6 0.5956 -2.2760 2.0663 13 6 1.4680 -4.4435 1.4311 14 6 1.5649 -4.9278 2.8792 15 6 1.3402 -6.4405 2.9272 16 6 1.4363 -6.9176 4.3534 17 1 1.6379 -6.2125 5.1462 18 6 1.2679 -8.2544 4.6459 19 7 1.0229 -9.1131 3.6804 20 14 1.3863 -8.8457 6.4139 21 1 1.6670 -7.6909 7.3043 22 1 0.1026 -9.4775 6.8116 23 1 2.4840 -9.8390 6.5311 24 1 -0.3634 -0.0004 -1.0277 25 1 -0.3634 -0.8897 0.5141 26 1 -0.3634 0.8903 0.5134 27 1 6.9123 -0.5236 0.0071 28 1 5.0743 -2.2181 0.0025 29 1 0.8752 -2.5993 -0.5143 30 1 2.5704 -3.1421 -0.5131 31 1 -0.3409 -2.4485 1.5359 32 1 0.5057 -2.6409 3.0895 33 1 0.8147 -1.2083 2.0788 34 1 0.4796 -4.6771 1.0352 35 1 2.2276 -4.9425 0.8294 36 1 2.5533 -4.6941 3.2750 37 1 0.8053 -4.4288 3.4808 38 1 0.3518 -6.6738 2.5314 39 1 2.0996 -6.9398 2.3253 40 1 0.9041 -10.0534 3.8863 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268486374.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:32 Heat of formation + Delta-G solvation = 71.786200 kcal Electronic energy + Delta-G solvation = -20792.996294 eV Core-core repulsion = 17734.854265 eV Total energy + Delta-G solvation = -3058.142028 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.72528 -39.02715 -37.65559 -35.75129 -33.73111 -32.26032 -31.94570 -29.27814 -28.67852 -27.04550 -25.74976 -24.79255 -23.19744 -21.57448 -21.48675 -20.74741 -19.00133 -18.48894 -17.47716 -17.01806 -16.59987 -16.44008 -16.00608 -15.94916 -15.55478 -15.12819 -14.72803 -14.35587 -14.25767 -13.91868 -13.67712 -13.54200 -13.34646 -13.09501 -12.96341 -12.67097 -12.56160 -12.43879 -12.29761 -12.29000 -12.17999 -11.50810 -11.39021 -11.34876 -11.20059 -11.05195 -10.55087 -9.72488 -9.33055 -8.61608 -8.20488 -6.30875 -0.12171 -0.06034 0.69845 1.22593 1.39497 1.40054 1.53269 1.58980 1.70310 2.40688 3.01637 3.12856 3.35129 3.69191 3.82527 3.97391 4.11936 4.24422 4.29842 4.41669 4.47693 4.53649 4.60889 4.62187 4.72467 4.76211 4.84189 4.90604 4.95005 5.05558 5.08036 5.20551 5.27345 5.52541 5.54654 5.74642 5.85464 5.86746 6.03211 6.04916 6.27864 6.66078 6.86097 7.38338 8.91385 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.023238 B = 0.002978 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.620430 B = 9400.579379 C =10054.733925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.037 3.963 3 N -0.494 5.494 4 C 0.108 3.892 5 S 0.196 5.804 6 C -0.201 4.201 7 C 0.031 3.969 8 N -0.400 5.400 9 C -0.016 4.016 10 C 0.134 3.866 11 N -0.548 5.548 12 C 0.021 3.979 13 C 0.070 3.930 14 C -0.089 4.089 15 C 0.027 3.973 16 C -0.542 4.542 17 H 0.056 0.944 18 C 0.001 3.999 19 N -0.932 5.932 20 Si 0.962 3.038 21 H -0.264 1.264 22 H -0.277 1.277 23 H -0.277 1.277 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.077 0.923 27 H 0.236 0.764 28 H 0.199 0.801 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.043 0.957 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.035 0.965 35 H 0.073 0.927 36 H 0.047 0.953 37 H 0.049 0.951 38 H -0.007 1.007 39 H -0.006 1.006 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.306 19.446 -10.810 23.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.095 4.095 3 N -0.219 5.219 4 C -0.258 4.258 5 S 0.444 5.556 6 C -0.337 4.337 7 C -0.097 4.097 8 N -0.079 5.079 9 C -0.131 4.131 10 C 0.005 3.995 11 N -0.272 5.272 12 C -0.126 4.126 13 C -0.057 4.057 14 C -0.127 4.127 15 C -0.010 4.010 16 C -0.580 4.580 17 H 0.074 0.926 18 C -0.197 4.197 19 N -0.572 5.572 20 Si 0.787 3.213 21 H -0.188 1.188 22 H -0.203 1.203 23 H -0.203 1.203 24 H 0.104 0.896 25 H 0.105 0.895 26 H 0.095 0.905 27 H 0.253 0.747 28 H 0.216 0.784 29 H 0.093 0.907 30 H 0.107 0.893 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.053 0.947 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.011 0.989 39 H 0.012 0.988 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.030 21.377 -10.600 25.176 hybrid contribution -1.034 -2.905 0.440 3.115 sum 6.996 18.471 -10.160 22.212 Atomic orbital electron populations 1.20439 0.85104 1.04097 1.03808 1.20994 0.97684 0.86875 1.03921 1.70428 0.97590 1.30627 1.23248 1.26780 1.01439 0.85113 1.12436 1.84599 0.84784 1.04724 1.81486 1.25590 1.05233 0.93654 1.09242 1.20894 0.80041 1.03126 1.05625 1.43867 1.06261 1.07329 1.50402 1.21106 0.79970 0.97356 1.14670 1.20412 1.01323 0.87831 0.89907 1.61971 1.45531 1.04655 1.15073 1.22589 0.91819 0.98873 0.99364 1.22040 0.99867 0.86253 0.97583 1.21393 1.00386 0.95779 0.95151 1.18960 0.94845 0.91846 0.95394 1.21713 1.48278 0.93441 0.94569 0.92585 1.25943 0.94790 0.97184 1.01789 1.70089 1.50027 1.03177 1.33949 0.85436 0.77883 0.78382 0.79583 1.18827 1.20314 1.20280 0.89600 0.89506 0.90457 0.74720 0.78387 0.90651 0.89316 0.93847 0.91900 0.91309 0.94693 0.90874 0.93434 0.93263 0.98885 0.98776 0.92759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.54 9.47 71.24 0.67 -0.87 16 2 C 0.04 0.98 6.15 41.36 0.25 1.24 16 3 N -0.49 -14.95 11.32 -184.83 -2.09 -17.04 16 4 C 0.11 2.87 8.92 179.68 1.60 4.47 16 5 S 0.20 3.41 23.37 -56.49 -1.32 2.09 16 6 C -0.20 -2.52 11.11 67.87 0.75 -1.76 16 7 C 0.03 0.54 11.26 83.86 0.94 1.49 16 8 N -0.40 -9.95 3.19 -342.49 -1.09 -11.04 16 9 C -0.02 -0.42 6.13 40.54 0.25 -0.17 16 10 C 0.13 3.16 5.19 85.56 0.44 3.60 16 11 N -0.55 -15.47 4.75 -927.05 -4.41 -19.88 16 12 C 0.02 0.56 7.78 127.69 0.99 1.56 16 13 C 0.07 2.27 4.96 86.30 0.43 2.70 16 14 C -0.09 -3.64 5.08 30.60 0.16 -3.49 16 15 C 0.03 1.42 4.97 29.85 0.15 1.56 16 16 C -0.54 -30.95 9.11 25.60 0.23 -30.72 16 17 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 18 C 0.00 0.04 5.46 84.66 0.46 0.50 16 19 N -0.93 -56.34 13.29 21.45 0.28 -56.06 16 20 Si 0.96 44.26 29.54 68.60 2.03 46.29 16 21 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 22 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 23 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 24 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 25 H 0.09 1.59 4.56 -2.39 -0.01 1.58 16 26 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 27 H 0.24 0.86 8.06 -2.91 -0.02 0.84 16 28 H 0.20 2.70 8.06 -2.91 -0.02 2.68 16 29 H 0.08 1.57 7.74 -2.39 -0.02 1.55 16 30 H 0.09 1.94 7.93 -2.39 -0.02 1.92 16 31 H 0.04 1.01 7.06 -2.39 -0.02 0.99 16 32 H 0.06 1.83 6.30 -2.39 -0.02 1.82 16 33 H 0.07 1.81 5.66 -2.39 -0.01 1.79 16 34 H 0.03 1.12 8.12 -2.39 -0.02 1.10 16 35 H 0.07 2.31 7.93 -2.39 -0.02 2.29 16 36 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.05 1.99 6.47 -2.39 -0.02 1.98 16 38 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 39 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 40 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -71.78 337.05 1.78 -70.00 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: 1.04 Total: 5.53 kcal Atomic # 6 Polarization: -27.24 SS G_CDS: 7.34 Total: -19.90 kcal Atomic # 7 Polarization: -96.71 SS G_CDS: -7.31 Total: -104.02 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: 3.41 SS G_CDS: -1.32 Total: 2.09 kcal Total: -71.78 1.78 -70.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268486374.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.785 kcal (2) G-P(sol) polarization free energy of solvation -71.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds