Wall clock time and date at job start Tue Mar 31 2020 06:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35987 * 116.99937 * 2 1 4 4 C 1.38718 * 120.00083 * 359.97438 * 3 2 1 5 5 C 1.38101 * 120.00215 * 180.02562 * 4 3 2 6 6 C 1.38724 * 119.99892 * 359.97438 * 5 4 3 7 7 O 1.35986 * 120.00195 * 179.97438 * 6 5 4 8 8 C 1.42905 * 116.99395 * 0.02562 * 7 6 5 9 9 C 1.50709 * 109.46650 * 179.97438 * 8 7 6 10 10 O 1.21283 * 119.99688 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99796 * 180.02562 * 9 8 7 12 12 C 1.46497 * 119.99943 * 180.02562 * 11 9 8 13 13 H 1.09007 * 109.47078 * 34.99474 * 12 11 9 14 14 C 1.53000 * 109.47021 * 275.00054 * 12 11 9 15 15 C 1.50694 * 109.47115 * 154.99835 * 12 11 9 16 16 H 1.08000 * 120.00563 * 359.97438 * 15 12 11 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 12 11 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 12 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 C 1.38671 * 120.00155 * 0.27744 * 6 5 4 24 24 C 1.38157 * 119.99635 * 359.46938 * 23 6 5 25 25 C 1.50705 * 119.99884 * 180.22844 * 24 23 6 26 26 H 1.09001 * 109.47506 * 300.00050 * 1 2 3 27 27 H 1.08997 * 109.47065 * 60.00630 * 1 2 3 28 28 H 1.09004 * 109.47073 * 180.02562 * 1 2 3 29 29 H 1.07998 * 119.99673 * 359.97438 * 4 3 2 30 30 H 1.07996 * 120.00373 * 179.97438 * 5 4 3 31 31 H 1.08998 * 109.46927 * 60.00276 * 8 7 6 32 32 H 1.08995 * 109.47572 * 299.99835 * 8 7 6 33 33 H 0.96997 * 119.99849 * 0.02562 * 11 9 8 34 34 H 1.09002 * 109.47106 * 299.99878 * 14 12 11 35 35 H 1.08998 * 109.47089 * 59.99825 * 14 12 11 36 36 H 1.08995 * 109.47131 * 179.97438 * 14 12 11 37 37 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 38 38 H 1.07999 * 120.00192 * 179.71898 * 23 6 5 39 39 H 1.09001 * 109.47472 * 270.27617 * 25 24 23 40 40 H 1.09001 * 109.46709 * 30.28088 * 25 24 23 41 41 H 1.09001 * 109.46601 * 150.27548 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2908 2.3750 -0.0005 5 6 1.9177 3.6056 -0.0011 6 6 3.3031 3.6782 -0.0005 7 8 3.9204 4.8898 -0.0016 8 6 3.0804 6.0459 -0.0027 9 6 3.9346 7.2875 -0.0031 10 8 5.1437 7.1916 -0.0030 11 7 3.3549 8.5042 -0.0036 12 6 4.1853 9.7112 -0.0046 13 1 5.0846 9.5330 -0.5942 14 6 4.5784 10.0609 1.4321 15 6 3.4090 10.8545 -0.6054 16 1 2.3983 10.6978 -0.9523 17 6 3.9894 12.1006 -0.7133 18 7 5.2203 12.2914 -0.2913 19 14 3.0272 13.5176 -1.4587 20 1 3.8689 14.7411 -1.4596 21 1 2.6457 13.1776 -2.8530 22 1 1.8021 13.7608 -0.6556 23 6 4.0584 2.5152 -0.0053 24 6 3.4312 1.2843 0.0005 25 6 4.2520 0.0203 0.0006 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 0.2123 2.3185 -0.0014 30 1 1.3296 4.5113 -0.0019 31 1 2.4511 6.0385 0.8873 32 1 2.4512 6.0370 -0.8926 33 1 2.3880 8.5808 -0.0033 34 1 3.6792 10.2390 2.0218 35 1 5.1399 9.2339 1.8667 36 1 5.1966 10.9586 1.4314 37 1 5.6287 13.1679 -0.3676 38 1 5.1369 2.5718 -0.0094 39 1 4.4499 -0.2845 -1.0270 40 1 5.1962 0.2004 0.5145 41 1 3.7034 -0.7690 0.5145 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268949811.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:38 Heat of formation + Delta-G solvation = -91.177553 kcal Electronic energy + Delta-G solvation = -22575.085117 eV Core-core repulsion = 19034.830828 eV Total energy + Delta-G solvation = -3540.254289 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.66452 -39.45258 -38.37197 -36.53175 -34.79361 -32.80548 -32.46507 -30.40105 -29.27804 -27.94904 -27.04678 -26.71904 -25.27900 -22.40484 -21.93756 -20.87259 -19.55079 -18.26522 -17.70800 -17.47444 -16.47770 -16.20571 -15.89586 -15.48889 -15.26030 -14.82897 -14.50359 -14.16595 -13.98020 -13.56072 -13.43013 -13.31614 -12.94253 -12.50509 -12.42088 -12.25863 -12.09882 -11.83070 -11.78702 -11.54688 -11.13717 -10.98041 -10.89434 -10.76495 -10.47601 -10.35635 -10.26388 -9.11278 -9.08079 -9.00920 -8.58811 -8.00281 -7.81041 -6.15294 -4.25254 1.07715 1.34198 2.91812 3.10345 3.22747 3.24269 3.29209 3.30495 3.55721 4.16802 4.35990 4.55142 4.56808 4.81184 4.86014 4.89648 5.07219 5.09741 5.16491 5.17481 5.22348 5.30128 5.36796 5.39219 5.51713 5.68353 5.79403 6.06620 6.15143 6.21715 6.46731 6.78790 6.92751 7.09931 7.11409 7.35900 7.39560 7.53049 7.65141 7.87058 8.10904 8.56242 8.72858 9.02027 9.41993 10.90668 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.034023 B = 0.002557 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.768407 B =10946.683695 C =11513.987915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.082 3.918 4 C -0.163 4.163 5 C -0.179 4.179 6 C 0.106 3.894 7 O -0.286 6.286 8 C 0.040 3.960 9 C 0.503 3.497 10 O -0.531 6.531 11 N -0.705 5.705 12 C 0.266 3.734 13 H 0.050 0.950 14 C -0.148 4.148 15 C -0.536 4.536 16 H 0.061 0.939 17 C 0.066 3.934 18 N -0.882 5.882 19 Si 0.903 3.097 20 H -0.285 1.285 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.115 4.115 24 C -0.077 4.077 25 C -0.105 4.105 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.097 0.903 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.390 0.610 34 H 0.027 0.973 35 H 0.015 0.985 36 H 0.091 0.909 37 H 0.266 0.734 38 H 0.140 0.860 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.419 -21.874 1.250 24.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.037 3.963 4 C -0.182 4.182 5 C -0.198 4.198 6 C 0.061 3.939 7 O -0.198 6.198 8 C -0.039 4.039 9 C 0.286 3.714 10 O -0.408 6.408 11 N -0.355 5.355 12 C 0.165 3.835 13 H 0.068 0.932 14 C -0.207 4.207 15 C -0.574 4.574 16 H 0.079 0.921 17 C -0.137 4.137 18 N -0.520 5.520 19 Si 0.731 3.269 20 H -0.211 1.211 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.133 4.133 24 C -0.077 4.077 25 C -0.161 4.161 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.116 0.884 29 H 0.147 0.853 30 H 0.150 0.850 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.222 0.778 34 H 0.046 0.954 35 H 0.035 0.965 36 H 0.110 0.890 37 H 0.076 0.924 38 H 0.158 0.842 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.077 -21.904 1.267 23.744 hybrid contribution -1.665 1.183 -0.372 2.077 sum -10.742 -20.720 0.895 23.356 Atomic orbital electron populations 1.23011 0.78816 1.03687 1.01218 1.86048 1.20896 1.26667 1.89464 1.18659 0.91690 0.84196 1.01718 1.20971 0.99835 0.91611 1.05741 1.21073 0.93368 0.98523 1.06818 1.18980 0.90956 0.85750 0.98251 1.86217 1.34130 1.11033 1.88447 1.22635 0.93588 0.84674 1.03024 1.19862 0.88766 0.84320 0.78475 1.90707 1.14186 1.86636 1.49282 1.46428 1.10536 1.05880 1.72663 1.18788 0.91197 0.79349 0.94154 0.93209 1.22092 0.99809 1.01520 0.97264 1.21157 1.00520 0.94032 1.41735 0.92055 1.24897 0.95008 0.98676 0.95133 1.69894 1.12830 1.23621 1.45616 0.86480 0.79656 0.81139 0.79648 1.21091 1.20160 1.20153 1.20175 1.00468 0.88452 1.04247 1.19016 0.90538 0.95354 1.02822 1.20626 0.98882 0.94097 1.02513 0.92844 0.92820 0.88440 0.85266 0.85020 0.89642 0.89568 0.77817 0.95380 0.96542 0.89012 0.92432 0.84220 0.91118 0.91342 0.91026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.17 9.54 -19.70 -0.19 -3.35 16 3 C 0.08 0.92 6.66 -39.24 -0.26 0.66 16 4 C -0.16 -1.71 9.03 -39.45 -0.36 -2.06 16 5 C -0.18 -2.08 9.03 -39.45 -0.36 -2.44 16 6 C 0.11 1.48 6.69 -39.24 -0.26 1.22 16 7 O -0.29 -4.76 9.67 -39.61 -0.38 -5.14 16 8 C 0.04 0.59 5.22 36.01 0.19 0.77 16 9 C 0.50 10.13 7.87 -10.98 -0.09 10.05 16 10 O -0.53 -13.28 16.16 -14.36 -0.23 -13.51 16 11 N -0.71 -14.36 5.07 -54.93 -0.28 -14.64 16 12 C 0.27 6.74 2.56 -69.09 -0.18 6.56 16 13 H 0.05 1.46 7.58 -51.92 -0.39 1.07 16 14 C -0.15 -3.68 9.26 37.16 0.34 -3.33 16 15 C -0.54 -14.01 8.73 -34.44 -0.30 -14.31 16 16 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 17 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 18 N -0.88 -24.73 11.32 55.43 0.63 -24.10 16 19 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 20 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 23 C -0.11 -1.47 9.64 -39.45 -0.38 -1.85 16 24 C -0.08 -0.88 5.89 -104.49 -0.62 -1.50 16 25 C -0.10 -0.94 9.79 36.01 0.35 -0.59 16 26 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 27 H 0.05 0.29 7.66 -51.93 -0.40 -0.10 16 28 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.13 1.02 6.29 -52.49 -0.33 0.69 16 30 H 0.13 1.27 6.29 -52.49 -0.33 0.94 16 31 H 0.09 1.02 7.66 -51.93 -0.40 0.62 16 32 H 0.09 1.04 7.66 -51.93 -0.40 0.64 16 33 H 0.39 6.57 8.54 -40.82 -0.35 6.22 16 34 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 37 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 38 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 41 H 0.07 0.62 7.53 -51.93 -0.39 0.23 16 LS Contribution 345.79 15.07 5.21 5.21 Total: -1.00 -32.73 345.79 -7.05 -39.78 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -5.77 Total: 4.36 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -1.01 Total: -3.98 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.35 Total: -38.75 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.80 Total: -22.01 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.73 -7.05 -39.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268949811.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.395 kcal (2) G-P(sol) polarization free energy of solvation -32.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds