Wall clock time and date at job start Tue Mar 31 2020 06:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35987 * 116.99937 * 2 1 4 4 C 1.38718 * 120.00083 * 359.97438 * 3 2 1 5 5 C 1.38101 * 120.00215 * 180.02562 * 4 3 2 6 6 C 1.38724 * 119.99892 * 359.97438 * 5 4 3 7 7 O 1.35986 * 120.00195 * 179.97438 * 6 5 4 8 8 C 1.42905 * 116.99395 * 0.02562 * 7 6 5 9 9 C 1.50709 * 109.46650 * 179.97438 * 8 7 6 10 10 O 1.21283 * 119.99688 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99796 * 180.02562 * 9 8 7 12 12 C 1.46497 * 119.99943 * 180.02562 * 11 9 8 13 13 H 1.09007 * 109.47078 * 34.99474 * 12 11 9 14 14 C 1.53000 * 109.47021 * 275.00054 * 12 11 9 15 15 C 1.50694 * 109.47115 * 154.99835 * 12 11 9 16 16 H 1.08000 * 120.00563 * 359.97438 * 15 12 11 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 12 11 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 12 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 C 1.38671 * 120.00155 * 0.27744 * 6 5 4 24 24 C 1.38157 * 119.99635 * 359.46938 * 23 6 5 25 25 C 1.50705 * 119.99884 * 180.22844 * 24 23 6 26 26 H 1.09001 * 109.47506 * 300.00050 * 1 2 3 27 27 H 1.08997 * 109.47065 * 60.00630 * 1 2 3 28 28 H 1.09004 * 109.47073 * 180.02562 * 1 2 3 29 29 H 1.07998 * 119.99673 * 359.97438 * 4 3 2 30 30 H 1.07996 * 120.00373 * 179.97438 * 5 4 3 31 31 H 1.08998 * 109.46927 * 60.00276 * 8 7 6 32 32 H 1.08995 * 109.47572 * 299.99835 * 8 7 6 33 33 H 0.96997 * 119.99849 * 0.02562 * 11 9 8 34 34 H 1.09002 * 109.47106 * 299.99878 * 14 12 11 35 35 H 1.08998 * 109.47089 * 59.99825 * 14 12 11 36 36 H 1.08995 * 109.47131 * 179.97438 * 14 12 11 37 37 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 38 38 H 1.07999 * 120.00192 * 179.71898 * 23 6 5 39 39 H 1.09001 * 109.47472 * 270.27617 * 25 24 23 40 40 H 1.09001 * 109.46709 * 30.28088 * 25 24 23 41 41 H 1.09001 * 109.46601 * 150.27548 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2908 2.3750 -0.0005 5 6 1.9177 3.6056 -0.0011 6 6 3.3031 3.6782 -0.0005 7 8 3.9204 4.8898 -0.0016 8 6 3.0804 6.0459 -0.0027 9 6 3.9346 7.2875 -0.0031 10 8 5.1437 7.1916 -0.0030 11 7 3.3549 8.5042 -0.0036 12 6 4.1853 9.7112 -0.0046 13 1 5.0846 9.5330 -0.5942 14 6 4.5784 10.0609 1.4321 15 6 3.4090 10.8545 -0.6054 16 1 2.3983 10.6978 -0.9523 17 6 3.9894 12.1006 -0.7133 18 7 5.2203 12.2914 -0.2913 19 14 3.0272 13.5176 -1.4587 20 1 3.8689 14.7411 -1.4596 21 1 2.6457 13.1776 -2.8530 22 1 1.8021 13.7608 -0.6556 23 6 4.0584 2.5152 -0.0053 24 6 3.4312 1.2843 0.0005 25 6 4.2520 0.0203 0.0006 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 0.2123 2.3185 -0.0014 30 1 1.3296 4.5113 -0.0019 31 1 2.4511 6.0385 0.8873 32 1 2.4512 6.0370 -0.8926 33 1 2.3880 8.5808 -0.0033 34 1 3.6792 10.2390 2.0218 35 1 5.1399 9.2339 1.8667 36 1 5.1966 10.9586 1.4314 37 1 5.6287 13.1679 -0.3676 38 1 5.1369 2.5718 -0.0094 39 1 4.4499 -0.2845 -1.0270 40 1 5.1962 0.2004 0.5145 41 1 3.7034 -0.7690 0.5145 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268949811.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:37 Heat of formation + Delta-G solvation = -112.520865 kcal Electronic energy + Delta-G solvation = -22576.010632 eV Core-core repulsion = 19034.830828 eV Total energy + Delta-G solvation = -3541.179805 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.59169 -40.71791 -39.63900 -37.47083 -36.67557 -34.38354 -33.61020 -31.77426 -30.64202 -28.79407 -28.11280 -27.50490 -27.33221 -23.49437 -23.16169 -22.16204 -21.26416 -19.30695 -18.88323 -18.64290 -17.78437 -17.35133 -17.05060 -17.01536 -16.60508 -16.08284 -15.61843 -15.42899 -15.14301 -14.76481 -14.49019 -14.34059 -14.24164 -13.99890 -13.72669 -13.28538 -13.12672 -13.01105 -12.86642 -12.84740 -12.73558 -12.54906 -12.39926 -12.26884 -12.15785 -11.68307 -11.35196 -11.13470 -10.79389 -10.58623 -9.86978 -9.82869 -8.69817 -8.17684 -6.35800 0.22937 0.44733 1.45849 1.48320 1.55916 1.66580 1.72512 2.40384 2.44017 2.68519 2.88638 3.12979 3.68392 3.78685 3.87800 4.02687 4.14723 4.16262 4.27536 4.38030 4.45470 4.50887 4.60073 4.73564 4.79118 4.83149 4.88226 4.90733 5.02486 5.07350 5.24097 5.33228 5.36630 5.40400 5.56972 5.62718 5.66556 5.87282 6.07612 6.29465 6.52113 6.71070 6.88444 7.30549 7.48149 8.88641 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.034023 B = 0.002557 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.768407 B =10946.683695 C =11513.987915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.329 6.329 3 C 0.079 3.921 4 C -0.162 4.162 5 C -0.176 4.176 6 C 0.079 3.921 7 O -0.321 6.321 8 C 0.052 3.948 9 C 0.497 3.503 10 O -0.589 6.589 11 N -0.697 5.697 12 C 0.271 3.729 13 H -0.003 1.003 14 C -0.135 4.135 15 C -0.547 4.547 16 H 0.078 0.922 17 C 0.012 3.988 18 N -0.919 5.919 19 Si 0.975 3.025 20 H -0.288 1.288 21 H -0.270 1.270 22 H -0.262 1.262 23 C -0.131 4.131 24 C -0.088 4.088 25 C -0.102 4.102 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.118 0.882 29 H 0.159 0.841 30 H 0.155 0.845 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.410 0.590 34 H 0.045 0.955 35 H 0.010 0.990 36 H 0.067 0.933 37 H 0.266 0.734 38 H 0.134 0.866 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.963 -22.781 1.032 26.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.243 6.243 3 C 0.034 3.966 4 C -0.180 4.180 5 C -0.195 4.195 6 C 0.034 3.966 7 O -0.235 6.235 8 C -0.026 4.026 9 C 0.283 3.717 10 O -0.470 6.470 11 N -0.348 5.348 12 C 0.168 3.832 13 H 0.015 0.985 14 C -0.194 4.194 15 C -0.585 4.585 16 H 0.096 0.904 17 C -0.188 4.188 18 N -0.557 5.557 19 Si 0.800 3.200 20 H -0.214 1.214 21 H -0.195 1.195 22 H -0.187 1.187 23 C -0.149 4.149 24 C -0.089 4.089 25 C -0.159 4.159 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.136 0.864 29 H 0.177 0.823 30 H 0.173 0.827 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.246 0.754 34 H 0.064 0.936 35 H 0.029 0.971 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.152 0.848 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.689 -22.845 1.052 26.154 hybrid contribution -0.583 1.319 -0.301 1.473 sum -13.272 -21.526 0.752 25.300 Atomic orbital electron populations 1.23325 0.76754 1.05485 1.02132 1.86042 1.23043 1.26066 1.89162 1.18851 0.91784 0.85095 1.00845 1.21302 1.01314 0.90828 1.04554 1.21324 0.92374 0.99977 1.05805 1.19190 0.92210 0.84729 1.00468 1.86148 1.35736 1.12206 1.89397 1.22565 0.92134 0.81603 1.06281 1.20829 0.88620 0.85711 0.76504 1.90680 1.17124 1.87566 1.51634 1.46103 1.11203 1.04949 1.72518 1.18382 0.90169 0.81298 0.93385 0.98517 1.21917 0.99970 1.00115 0.97421 1.21511 1.01192 0.94224 1.41588 0.90361 1.25848 0.95854 1.01581 0.95488 1.70058 1.14606 1.24188 1.46824 0.85350 0.78388 0.77340 0.78967 1.21398 1.19531 1.18652 1.20295 1.00501 0.89083 1.05070 1.19265 0.91410 0.95540 1.02680 1.20651 0.98941 0.93204 1.03089 0.91844 0.91858 0.86414 0.82343 0.82701 0.86010 0.86200 0.75353 0.93632 0.97077 0.91431 0.92528 0.84812 0.90441 0.90712 0.90623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.33 -5.80 9.54 -93.40 -0.89 -6.69 16 3 C 0.08 1.62 6.66 22.49 0.15 1.77 16 4 C -0.16 -2.90 9.03 22.35 0.20 -2.70 16 5 C -0.18 -3.62 9.03 22.35 0.20 -3.42 16 6 C 0.08 2.13 6.69 22.49 0.15 2.28 16 7 O -0.32 -10.61 9.67 -74.35 -0.72 -11.33 16 8 C 0.05 1.44 5.22 71.24 0.37 1.81 16 9 C 0.50 20.05 7.87 87.66 0.69 20.74 16 10 O -0.59 -30.70 16.16 16.00 0.26 -30.45 16 11 N -0.70 -28.00 5.07 -446.09 -2.26 -30.26 16 12 C 0.27 13.99 2.56 44.24 0.11 14.11 16 13 H 0.00 -0.19 7.58 -2.38 -0.02 -0.21 16 14 C -0.14 -6.87 9.26 71.98 0.67 -6.21 16 15 C -0.55 -28.40 8.73 25.60 0.22 -28.17 16 16 H 0.08 3.70 7.74 -2.91 -0.02 3.68 16 17 C 0.01 0.66 5.30 84.66 0.45 1.11 16 18 N -0.92 -52.66 11.32 21.45 0.24 -52.41 16 19 Si 0.98 41.31 29.54 68.60 2.03 43.34 16 20 H -0.29 -12.25 7.11 99.48 0.71 -11.54 16 21 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 22 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 23 C -0.13 -3.38 9.64 22.35 0.22 -3.16 16 24 C -0.09 -1.96 5.89 -19.78 -0.12 -2.08 16 25 C -0.10 -1.77 9.79 71.24 0.70 -1.07 16 26 H 0.06 0.47 7.66 -2.39 -0.02 0.45 16 27 H 0.06 0.47 7.66 -2.39 -0.02 0.46 16 28 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.16 1.83 6.29 -2.91 -0.02 1.81 16 30 H 0.16 2.33 6.29 -2.91 -0.02 2.31 16 31 H 0.12 2.47 7.66 -2.39 -0.02 2.45 16 32 H 0.12 2.49 7.66 -2.39 -0.02 2.48 16 33 H 0.41 12.93 8.54 -92.71 -0.79 12.14 16 34 H 0.04 2.08 8.14 -2.39 -0.02 2.07 16 35 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.07 3.76 6.07 -2.39 -0.01 3.75 16 37 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 38 H 0.13 3.42 8.06 -2.91 -0.02 3.39 16 39 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.07 1.16 8.09 -2.39 -0.02 1.14 16 41 H 0.07 1.23 7.53 -2.39 -0.02 1.21 16 Total: -1.00 -74.18 345.79 4.04 -70.15 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: 0.26 Total: 21.38 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: 5.13 Total: -3.73 kcal Atomic # 7 Polarization: -80.65 SS G_CDS: -2.02 Total: -82.67 kcal Atomic # 8 Polarization: -47.12 SS G_CDS: -1.35 Total: -48.47 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -74.18 4.04 -70.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268949811.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.374 kcal (2) G-P(sol) polarization free energy of solvation -74.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds