Wall clock time and date at job start Tue Mar 31 2020 07:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47612 * 2 1 4 4 C 1.52992 * 109.47729 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.46933 * 304.99936 * 4 3 2 6 6 O 1.42896 * 109.47145 * 64.99474 * 4 3 2 7 7 C 1.50696 * 109.47387 * 185.00186 * 4 3 2 8 8 O 1.21289 * 120.00187 * 24.99324 * 7 4 3 9 9 N 1.34775 * 120.00099 * 204.99837 * 7 4 3 10 10 C 1.39923 * 120.00134 * 185.19656 * 9 7 4 11 11 C 1.38970 * 120.03680 * 213.75260 * 10 9 7 12 12 C 1.38151 * 120.06645 * 179.97438 * 11 10 9 13 13 C 1.38167 * 120.13946 * 0.02639 * 12 11 10 14 14 C 1.38909 * 120.07258 * 359.97438 * 13 12 11 15 15 O 1.35750 * 120.03766 * 180.02562 * 14 13 12 16 16 C 1.34838 * 116.99698 * 5.88361 * 15 14 13 17 17 H 1.07997 * 119.99720 * 5.40311 * 16 15 14 18 18 C 1.38654 * 119.99754 * 185.40630 * 16 15 14 19 19 N 1.31558 * 120.00256 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99710 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47416 * 89.99650 * 20 18 16 22 22 H 1.48497 * 109.47021 * 209.99690 * 20 18 16 23 23 H 1.48500 * 109.47039 * 329.99556 * 20 18 16 24 24 C 1.38707 * 120.03614 * 33.73583 * 10 9 7 25 25 H 1.09002 * 109.46991 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47071 * 299.99916 * 1 2 3 27 27 H 1.08996 * 109.47110 * 60.00132 * 1 2 3 28 28 H 1.09001 * 109.47407 * 239.99705 * 2 1 3 29 29 H 1.09006 * 109.47199 * 119.99792 * 2 1 3 30 30 H 1.09001 * 109.46976 * 59.99441 * 3 2 1 31 31 H 1.09004 * 109.46379 * 300.00570 * 3 2 1 32 32 H 1.09000 * 109.47017 * 300.00070 * 5 4 3 33 33 H 1.08998 * 109.46900 * 59.99740 * 5 4 3 34 34 H 1.08994 * 109.47042 * 179.97438 * 5 4 3 35 35 H 0.96705 * 114.00308 * 60.00570 * 6 4 3 36 36 H 0.97007 * 119.99971 * 5.20250 * 9 7 4 37 37 H 1.08002 * 119.96601 * 359.97438 * 11 10 9 38 38 H 1.08000 * 119.93163 * 180.02562 * 12 11 10 39 39 H 1.07998 * 119.96739 * 179.97438 * 13 12 11 40 40 H 0.96995 * 119.99881 * 180.02562 * 19 18 16 41 41 H 1.08005 * 120.06765 * 359.74575 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0805 0.6149 1.1807 6 8 4.0458 0.8732 -1.2219 7 6 4.0724 2.8578 0.1232 8 8 3.3773 3.7048 0.6433 9 7 5.2942 3.1825 -0.3440 10 6 5.8051 4.4679 -0.1327 11 6 6.6215 5.0580 -1.0901 12 6 7.1259 6.3272 -0.8824 13 6 6.8211 7.0137 0.2774 14 6 6.0057 6.4293 1.2382 15 8 5.7063 7.1046 2.3772 16 6 6.1302 8.3819 2.4608 17 1 6.6039 8.8503 1.6109 18 6 5.9577 9.0938 3.6381 19 7 5.3801 8.5232 4.6733 20 14 6.5442 10.8635 3.7538 21 1 5.4506 11.7760 3.3333 22 1 6.9302 11.1664 5.1553 23 1 7.7181 11.0550 2.8647 24 6 5.4971 5.1546 1.0324 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6766 1.9562 -0.8900 32 1 3.7175 1.0491 2.1123 33 1 3.7171 -0.4088 1.0911 34 1 5.1704 0.6145 1.1800 35 1 3.7602 1.3477 -2.0146 36 1 5.8193 2.5251 -0.8268 37 1 6.8618 4.5238 -1.9975 38 1 7.7598 6.7839 -1.6281 39 1 7.2173 8.0056 0.4371 40 1 5.2592 9.0214 5.4967 41 1 4.8594 4.6999 1.7760 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269326262.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:38 Heat of formation + Delta-G solvation = -96.773320 kcal Electronic energy + Delta-G solvation = -23325.972756 eV Core-core repulsion = 19785.475817 eV Total energy + Delta-G solvation = -3540.496940 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.65687 -38.92693 -37.60972 -36.43400 -34.69402 -33.87115 -32.24542 -31.26633 -29.50185 -28.44698 -26.99185 -25.35286 -24.35820 -22.32815 -21.48324 -20.79191 -19.98527 -18.34964 -18.05090 -17.09671 -16.07613 -15.84868 -15.52735 -15.11949 -15.06471 -14.70173 -14.26479 -14.04012 -13.73415 -13.56459 -13.45107 -12.83014 -12.65228 -12.60134 -12.45616 -12.22920 -12.02649 -11.86981 -11.70972 -11.55504 -11.21377 -11.12347 -11.02025 -10.83413 -10.72607 -10.62970 -10.45752 -9.78796 -9.55703 -9.15342 -8.81192 -7.69981 -7.19400 -6.42267 -4.01357 1.93388 2.33276 2.78399 3.09900 3.15006 3.16255 3.20158 3.86057 3.98575 4.43670 4.51772 4.61283 4.69362 4.94042 4.99818 5.13379 5.24738 5.33517 5.43490 5.52915 5.57853 5.61782 5.68544 5.69479 5.81828 5.84869 5.92938 6.07984 6.10250 6.15886 6.22017 6.35671 6.66741 6.83885 7.01983 7.07052 7.17596 7.33901 7.46402 7.68553 7.78171 8.02497 8.29644 9.02726 9.73697 10.75704 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.021972 B = 0.003441 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.026163 B = 8134.774547 C = 9030.981812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.134 4.134 4 C 0.124 3.876 5 C -0.141 4.141 6 O -0.551 6.551 7 C 0.480 3.520 8 O -0.503 6.503 9 N -0.662 5.662 10 C 0.175 3.825 11 C -0.236 4.236 12 C -0.058 4.058 13 C -0.245 4.245 14 C 0.168 3.832 15 O -0.174 6.174 16 C -0.391 4.391 17 H 0.092 0.908 18 C 0.039 3.961 19 N -0.861 5.861 20 Si 0.942 3.058 21 H -0.273 1.273 22 H -0.278 1.278 23 H -0.267 1.267 24 C -0.188 4.188 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.381 0.619 36 H 0.410 0.590 37 H 0.108 0.892 38 H 0.112 0.888 39 H 0.128 0.872 40 H 0.270 0.730 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.855 -15.301 -11.122 19.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.172 4.172 4 C 0.080 3.920 5 C -0.198 4.198 6 O -0.357 6.357 7 C 0.265 3.735 8 O -0.377 6.377 9 N -0.307 5.307 10 C 0.082 3.918 11 C -0.257 4.257 12 C -0.077 4.077 13 C -0.264 4.264 14 C 0.113 3.887 15 O -0.077 6.077 16 C -0.467 4.467 17 H 0.110 0.890 18 C -0.166 4.166 19 N -0.495 5.495 20 Si 0.766 3.234 21 H -0.199 1.199 22 H -0.203 1.203 23 H -0.192 1.192 24 C -0.210 4.210 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.229 0.771 36 H 0.246 0.754 37 H 0.126 0.874 38 H 0.130 0.870 39 H 0.146 0.854 40 H 0.080 0.920 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.309 -15.154 -9.847 18.373 hybrid contribution 0.389 1.091 -0.641 1.323 sum -2.921 -14.064 -10.487 17.785 Atomic orbital electron populations 1.21780 0.95778 1.01501 1.02011 1.21540 0.95716 0.95933 1.02658 1.22115 0.92612 0.98037 1.04473 1.21465 0.94552 0.88831 0.87138 1.21824 1.02333 1.00379 0.95248 1.86546 1.76860 1.57047 1.15226 1.21543 0.81558 0.91161 0.79203 1.90813 1.55710 1.49863 1.41276 1.43430 1.17764 1.12851 1.56679 1.17213 0.96438 0.84599 0.93585 1.20271 1.08307 0.97599 0.99493 1.20513 0.97527 0.93459 0.96189 1.21187 1.06043 1.02715 0.96499 1.19118 0.91324 0.90914 0.87358 1.84003 1.66959 1.25390 1.31318 1.21340 1.40662 0.84722 1.00026 0.89020 1.25306 0.96746 1.00233 0.94268 1.70050 1.39384 1.37245 1.02860 0.85705 0.79067 0.80524 0.78073 1.19866 1.20264 1.19185 1.20001 1.07562 0.95253 0.98139 0.92758 0.92577 0.92815 0.91411 0.91482 0.89370 0.91286 0.90144 0.90157 0.91307 0.77126 0.75373 0.87353 0.87001 0.85407 0.92013 0.85445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.83 16 2 C -0.12 -1.01 5.34 -26.73 -0.14 -1.15 16 3 C -0.13 -1.40 4.12 -26.74 -0.11 -1.51 16 4 C 0.12 1.36 1.02 -91.77 -0.09 1.27 16 5 C -0.14 -1.43 8.34 37.16 0.31 -1.12 16 6 O -0.55 -4.91 11.78 -35.23 -0.41 -5.33 16 7 C 0.48 7.33 6.43 -10.99 -0.07 7.26 16 8 O -0.50 -10.06 13.69 5.55 0.08 -9.99 16 9 N -0.66 -9.78 5.28 -9.88 -0.05 -9.83 16 10 C 0.17 3.31 6.27 -83.72 -0.52 2.79 16 11 C -0.24 -4.09 9.96 -39.34 -0.39 -4.48 16 12 C -0.06 -1.07 10.03 -39.64 -0.40 -1.47 16 13 C -0.24 -5.44 9.13 -39.36 -0.36 -5.80 16 14 C 0.17 4.26 6.64 -39.13 -0.26 4.00 16 15 O -0.17 -5.17 9.76 0.03 0.00 -5.17 16 16 C -0.39 -11.20 9.44 30.89 0.29 -10.91 16 17 H 0.09 2.41 5.29 -52.49 -0.28 2.14 16 18 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 19 N -0.86 -25.81 13.67 55.48 0.76 -25.05 16 20 Si 0.94 20.83 29.55 -169.99 -5.02 15.80 16 21 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 22 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 23 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 24 C -0.19 -4.38 8.60 -39.21 -0.34 -4.71 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.54 7.82 -51.93 -0.41 0.14 16 29 H 0.07 0.54 6.35 -51.93 -0.33 0.21 16 30 H 0.09 1.08 7.68 -51.93 -0.40 0.68 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 0.67 6.35 -51.93 -0.33 0.34 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.38 2.36 9.04 45.56 0.41 2.77 16 36 H 0.41 4.68 8.18 -40.82 -0.33 4.34 16 37 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 38 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 39 H 0.13 2.82 5.71 -52.49 -0.30 2.52 16 40 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.13 3.16 6.43 -52.48 -0.34 2.82 16 LS Contribution 341.91 15.07 5.15 5.15 Total: -1.00 -33.96 341.91 -6.14 -40.09 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -4.82 Total: 9.99 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: -1.81 Total: -15.67 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: 0.71 Total: -34.88 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.34 Total: -20.48 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.96 -6.14 -40.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269326262.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.680 kcal (2) G-P(sol) polarization free energy of solvation -33.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds