Wall clock time and date at job start Tue Mar 31 2020 07:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47612 * 2 1 4 4 C 1.52992 * 109.47729 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.46933 * 304.99936 * 4 3 2 6 6 O 1.42896 * 109.47145 * 64.99474 * 4 3 2 7 7 C 1.50696 * 109.47387 * 185.00186 * 4 3 2 8 8 O 1.21289 * 120.00187 * 24.99324 * 7 4 3 9 9 N 1.34775 * 120.00099 * 204.99837 * 7 4 3 10 10 C 1.39923 * 120.00134 * 185.19656 * 9 7 4 11 11 C 1.38970 * 120.03680 * 213.75260 * 10 9 7 12 12 C 1.38151 * 120.06645 * 179.97438 * 11 10 9 13 13 C 1.38167 * 120.13946 * 0.02639 * 12 11 10 14 14 C 1.38909 * 120.07258 * 359.97438 * 13 12 11 15 15 O 1.35750 * 120.03766 * 180.02562 * 14 13 12 16 16 C 1.34838 * 116.99698 * 5.88361 * 15 14 13 17 17 H 1.07997 * 119.99720 * 5.40311 * 16 15 14 18 18 C 1.38654 * 119.99754 * 185.40630 * 16 15 14 19 19 N 1.31558 * 120.00256 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99710 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47416 * 89.99650 * 20 18 16 22 22 H 1.48497 * 109.47021 * 209.99690 * 20 18 16 23 23 H 1.48500 * 109.47039 * 329.99556 * 20 18 16 24 24 C 1.38707 * 120.03614 * 33.73583 * 10 9 7 25 25 H 1.09002 * 109.46991 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47071 * 299.99916 * 1 2 3 27 27 H 1.08996 * 109.47110 * 60.00132 * 1 2 3 28 28 H 1.09001 * 109.47407 * 239.99705 * 2 1 3 29 29 H 1.09006 * 109.47199 * 119.99792 * 2 1 3 30 30 H 1.09001 * 109.46976 * 59.99441 * 3 2 1 31 31 H 1.09004 * 109.46379 * 300.00570 * 3 2 1 32 32 H 1.09000 * 109.47017 * 300.00070 * 5 4 3 33 33 H 1.08998 * 109.46900 * 59.99740 * 5 4 3 34 34 H 1.08994 * 109.47042 * 179.97438 * 5 4 3 35 35 H 0.96705 * 114.00308 * 60.00570 * 6 4 3 36 36 H 0.97007 * 119.99971 * 5.20250 * 9 7 4 37 37 H 1.08002 * 119.96601 * 359.97438 * 11 10 9 38 38 H 1.08000 * 119.93163 * 180.02562 * 12 11 10 39 39 H 1.07998 * 119.96739 * 179.97438 * 13 12 11 40 40 H 0.96995 * 119.99881 * 180.02562 * 19 18 16 41 41 H 1.08005 * 120.06765 * 359.74575 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0805 0.6149 1.1807 6 8 4.0458 0.8732 -1.2219 7 6 4.0724 2.8578 0.1232 8 8 3.3773 3.7048 0.6433 9 7 5.2942 3.1825 -0.3440 10 6 5.8051 4.4679 -0.1327 11 6 6.6215 5.0580 -1.0901 12 6 7.1259 6.3272 -0.8824 13 6 6.8211 7.0137 0.2774 14 6 6.0057 6.4293 1.2382 15 8 5.7063 7.1046 2.3772 16 6 6.1302 8.3819 2.4608 17 1 6.6039 8.8503 1.6109 18 6 5.9577 9.0938 3.6381 19 7 5.3801 8.5232 4.6733 20 14 6.5442 10.8635 3.7538 21 1 5.4506 11.7760 3.3333 22 1 6.9302 11.1664 5.1553 23 1 7.7181 11.0550 2.8647 24 6 5.4971 5.1546 1.0324 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6766 1.9562 -0.8900 32 1 3.7175 1.0491 2.1123 33 1 3.7171 -0.4088 1.0911 34 1 5.1704 0.6145 1.1800 35 1 3.7602 1.3477 -2.0146 36 1 5.8193 2.5251 -0.8268 37 1 6.8618 4.5238 -1.9975 38 1 7.7598 6.7839 -1.6281 39 1 7.2173 8.0056 0.4371 40 1 5.2592 9.0214 5.4967 41 1 4.8594 4.6999 1.7760 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269326262.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:37 Heat of formation + Delta-G solvation = -122.583084 kcal Electronic energy + Delta-G solvation = -23327.091952 eV Core-core repulsion = 19785.475817 eV Total energy + Delta-G solvation = -3541.616135 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.93982 -40.59672 -38.88250 -37.98115 -35.79066 -35.01656 -34.27484 -32.13448 -31.18264 -30.03735 -27.79487 -27.37713 -25.52397 -23.72047 -23.04469 -21.93319 -21.05691 -20.00501 -19.42970 -18.80693 -17.36818 -16.93510 -16.79109 -16.71842 -16.32626 -16.07245 -15.78941 -15.62896 -15.45574 -14.74476 -14.44275 -14.29080 -14.22651 -13.61443 -13.51319 -13.41288 -13.23062 -13.11243 -12.95287 -12.72012 -12.69207 -12.64971 -12.36591 -12.12985 -11.93162 -11.63916 -11.46150 -11.40245 -11.22895 -10.78781 -10.52045 -9.37768 -8.91293 -8.48448 -6.18143 0.34497 0.66848 1.33599 1.40635 1.48313 1.52495 1.88653 2.17810 2.80844 3.04554 3.14527 3.29913 3.58201 3.69289 3.83762 4.10053 4.21233 4.26609 4.33954 4.38880 4.52448 4.65926 4.67321 4.69578 4.74903 4.79386 4.91864 5.00324 5.01950 5.08423 5.09806 5.24625 5.34638 5.36631 5.41242 5.47008 5.60316 5.71101 6.00627 6.15289 6.29133 6.61609 6.95160 7.06933 7.76930 8.75389 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.021972 B = 0.003441 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.026163 B = 8134.774547 C = 9030.981812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.114 4.114 3 C -0.133 4.133 4 C 0.143 3.857 5 C -0.143 4.143 6 O -0.540 6.540 7 C 0.476 3.524 8 O -0.556 6.556 9 N -0.647 5.647 10 C 0.181 3.819 11 C -0.205 4.205 12 C -0.047 4.047 13 C -0.255 4.255 14 C 0.128 3.872 15 O -0.235 6.235 16 C -0.414 4.414 17 H 0.106 0.894 18 C -0.026 4.026 19 N -0.923 5.923 20 Si 1.023 2.977 21 H -0.264 1.264 22 H -0.271 1.271 23 H -0.248 1.248 24 C -0.214 4.214 25 H 0.068 0.932 26 H 0.045 0.955 27 H 0.054 0.946 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.105 0.895 34 H 0.070 0.930 35 H 0.396 0.604 36 H 0.431 0.569 37 H 0.164 0.836 38 H 0.161 0.839 39 H 0.124 0.876 40 H 0.273 0.727 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.296 -16.700 -14.907 22.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.151 4.151 3 C -0.171 4.171 4 C 0.098 3.902 5 C -0.201 4.201 6 O -0.348 6.348 7 C 0.264 3.736 8 O -0.433 6.433 9 N -0.294 5.294 10 C 0.087 3.913 11 C -0.225 4.225 12 C -0.066 4.066 13 C -0.275 4.275 14 C 0.077 3.923 15 O -0.142 6.142 16 C -0.490 4.490 17 H 0.123 0.877 18 C -0.223 4.223 19 N -0.562 5.562 20 Si 0.842 3.158 21 H -0.189 1.189 22 H -0.195 1.195 23 H -0.171 1.171 24 C -0.236 4.236 25 H 0.087 0.913 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.123 0.877 34 H 0.089 0.911 35 H 0.247 0.753 36 H 0.272 0.728 37 H 0.182 0.818 38 H 0.179 0.821 39 H 0.142 0.858 40 H 0.082 0.918 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.723 -16.629 -13.724 21.629 hybrid contribution -0.093 1.250 0.248 1.277 sum -1.816 -15.379 -13.476 20.528 Atomic orbital electron populations 1.21792 0.95480 1.02290 1.01624 1.21511 0.95955 0.94188 1.03470 1.22107 0.92236 0.99464 1.03315 1.21236 0.94596 0.85784 0.88541 1.21879 1.02517 1.01390 0.94267 1.86544 1.76665 1.56610 1.15009 1.22537 0.81035 0.92544 0.77488 1.90810 1.57231 1.51896 1.43333 1.43384 1.17829 1.11781 1.56456 1.17380 0.95801 0.85910 0.92218 1.20906 1.04777 0.96914 0.99911 1.21058 0.96802 0.93510 0.95215 1.21343 1.05779 1.02969 0.97366 1.19653 0.93246 0.91937 0.87504 1.83963 1.69839 1.26387 1.33961 1.21895 1.40967 0.85158 1.00998 0.87706 1.26711 0.96620 1.05572 0.93434 1.70216 1.42313 1.39758 1.03878 0.84530 0.79150 0.73532 0.78593 1.18899 1.19550 1.17126 1.20028 1.08367 0.95477 0.99721 0.91348 0.93553 0.92714 0.90133 0.90972 0.92024 0.91157 0.91555 0.87683 0.91076 0.75343 0.72826 0.81843 0.82139 0.85817 0.91837 0.88641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.91 71.98 0.71 -1.48 16 2 C -0.11 -1.67 5.34 30.59 0.16 -1.51 16 3 C -0.13 -2.67 4.12 30.59 0.13 -2.55 16 4 C 0.14 2.91 1.02 -11.54 -0.01 2.90 16 5 C -0.14 -2.72 8.34 71.98 0.60 -2.12 16 6 O -0.54 -7.66 11.78 -148.98 -1.75 -9.41 16 7 C 0.48 14.39 6.43 87.66 0.56 14.95 16 8 O -0.56 -23.37 13.69 -3.06 -0.04 -23.41 16 9 N -0.65 -17.79 5.28 -303.56 -1.60 -19.39 16 10 C 0.18 6.60 6.27 38.14 0.24 6.84 16 11 C -0.20 -6.15 9.96 22.42 0.22 -5.92 16 12 C -0.05 -1.57 10.03 22.23 0.22 -1.34 16 13 C -0.25 -11.31 9.13 22.41 0.20 -11.11 16 14 C 0.13 6.85 6.64 22.56 0.15 7.00 16 15 O -0.23 -15.14 9.76 -22.82 -0.22 -15.36 16 16 C -0.41 -25.11 9.44 67.92 0.64 -24.47 16 17 H 0.11 5.74 5.29 -2.91 -0.02 5.73 16 18 C -0.03 -1.55 5.49 84.83 0.47 -1.08 16 19 N -0.92 -59.12 13.67 21.61 0.30 -58.82 16 20 Si 1.02 43.99 29.55 68.60 2.03 46.02 16 21 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 22 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 23 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 24 C -0.21 -10.45 8.60 22.51 0.19 -10.26 16 25 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 27 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.08 1.02 7.82 -2.39 -0.02 1.00 16 29 H 0.07 1.00 6.35 -2.38 -0.02 0.98 16 30 H 0.06 1.58 7.68 -2.39 -0.02 1.57 16 31 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 32 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.10 1.49 6.35 -2.39 -0.02 1.47 16 34 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.40 3.26 9.04 -74.05 -0.67 2.60 16 36 H 0.43 8.11 8.18 -92.70 -0.76 7.35 16 37 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 38 H 0.16 3.82 8.06 -2.91 -0.02 3.80 16 39 H 0.12 5.50 5.71 -2.91 -0.02 5.48 16 40 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 41 H 0.10 5.19 6.43 -2.91 -0.02 5.17 16 Total: -1.00 -83.13 341.91 2.84 -80.29 By element: Atomic # 1 Polarization: 30.60 SS G_CDS: -0.36 Total: 30.25 kcal Atomic # 6 Polarization: -34.66 SS G_CDS: 4.50 Total: -30.16 kcal Atomic # 7 Polarization: -76.90 SS G_CDS: -1.31 Total: -78.21 kcal Atomic # 8 Polarization: -46.16 SS G_CDS: -2.02 Total: -48.18 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -83.13 2.84 -80.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269326262.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.289 kcal (2) G-P(sol) polarization free energy of solvation -83.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds