Wall clock time and date at job start Tue Mar 31 2020 07:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47402 * 2 1 4 4 O 1.42902 * 109.47035 * 240.00500 * 2 1 3 5 5 C 1.53000 * 109.47363 * 120.00456 * 2 1 3 6 6 C 1.52997 * 109.47229 * 184.99560 * 5 2 1 7 7 N 1.46499 * 109.47058 * 179.97438 * 6 5 2 8 8 C 1.34776 * 120.00532 * 180.02562 * 7 6 5 9 9 O 1.21596 * 119.99483 * 0.02562 * 8 7 6 10 10 C 1.47529 * 120.00576 * 179.97438 * 8 7 6 11 11 C 1.39668 * 120.19410 * 0.02562 * 10 8 7 12 12 C 1.37835 * 119.91853 * 179.97438 * 11 10 8 13 13 C 1.38573 * 120.31903 * 0.02562 * 12 11 10 14 14 C 1.38022 * 120.40696 * 0.02562 * 13 12 11 15 15 C 1.38831 * 120.06839 * 359.95623 * 14 13 12 16 16 O 1.35527 * 120.16025 * 180.02562 * 15 14 13 17 17 C 1.34817 * 116.99627 * 354.39561 * 16 15 14 18 18 H 1.07998 * 120.00286 * 5.06815 * 17 16 15 19 19 C 1.38705 * 119.99676 * 185.06799 * 17 16 15 20 20 N 1.31514 * 119.99991 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99619 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47413 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47271 * 120.00166 * 21 19 17 24 24 H 1.48507 * 109.46838 * 239.99679 * 21 19 17 25 25 H 1.09001 * 109.46833 * 299.99825 * 1 2 3 26 26 H 1.09004 * 109.46711 * 59.99018 * 1 2 3 27 27 H 1.08994 * 109.47462 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47114 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47258 * 300.00332 * 3 2 1 30 30 H 1.09001 * 109.46983 * 60.00267 * 3 2 1 31 31 H 0.96713 * 113.99707 * 300.00169 * 4 2 1 32 32 H 1.09004 * 109.46986 * 64.99441 * 5 2 1 33 33 H 1.09000 * 109.46715 * 304.99987 * 5 2 1 34 34 H 1.08999 * 109.46796 * 60.00185 * 6 5 2 35 35 H 1.08995 * 109.47178 * 299.99712 * 6 5 2 36 36 H 0.97003 * 120.00039 * 0.02562 * 7 6 5 37 37 H 1.07997 * 120.04248 * 0.26955 * 11 10 8 38 38 H 1.07992 * 119.83718 * 179.97438 * 12 11 10 39 39 H 1.08000 * 119.79251 * 179.97438 * 13 12 11 40 40 H 1.07996 * 119.96390 * 179.97438 * 14 13 12 41 41 H 0.96997 * 120.00153 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 2.0401 -0.7213 1.2492 6 6 3.5649 -0.6135 1.3135 7 7 4.0532 -1.3036 2.5099 8 6 5.3740 -1.3390 2.7757 9 8 6.1603 -0.7977 2.0227 10 6 5.8657 -2.0336 3.9809 11 6 4.9660 -2.6563 4.8489 12 6 5.4317 -3.3040 5.9730 13 6 6.7895 -3.3405 6.2473 14 6 7.6902 -2.7286 5.3991 15 6 7.2393 -2.0719 4.2621 16 8 8.1221 -1.4709 3.4277 17 6 9.4126 -1.4461 3.8170 18 1 9.7157 -1.9631 4.7155 19 6 10.3511 -0.7565 3.0636 20 7 9.9821 -0.1274 1.9692 21 14 12.1393 -0.7227 3.6026 22 1 12.2930 -1.5023 4.8571 23 1 12.9878 -1.3205 2.5406 24 1 12.5585 0.6822 3.8389 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.7209 -1.5952 -1.2330 32 1 1.7516 -1.7716 1.2055 33 1 1.6054 -0.2619 2.1369 34 1 3.8532 0.4368 1.3573 35 1 3.9994 -1.0730 0.4258 36 1 3.4258 -1.7352 3.1109 37 1 3.9072 -2.6344 4.6372 38 1 4.7348 -3.7847 6.6435 39 1 7.1450 -3.8501 7.1307 40 1 8.7468 -2.7611 5.6200 41 1 10.6383 0.3552 1.4425 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274837383.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:23 Heat of formation + Delta-G solvation = -94.048334 kcal Electronic energy + Delta-G solvation = -23278.716909 eV Core-core repulsion = 19738.338134 eV Total energy + Delta-G solvation = -3540.378775 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.61974 -38.83616 -37.81227 -36.31189 -34.47457 -32.67467 -32.31524 -30.75006 -28.94121 -28.70863 -27.55679 -25.38153 -23.87874 -22.42195 -21.25952 -20.47101 -19.77544 -18.03000 -17.61650 -16.53576 -15.95921 -15.76415 -15.62248 -14.66962 -14.64775 -14.52032 -14.14410 -13.98752 -13.78112 -13.62677 -13.09178 -12.95180 -12.54863 -12.41040 -12.38962 -12.21901 -11.95549 -11.70398 -11.59409 -11.38309 -11.13147 -11.10262 -10.89399 -10.77428 -10.73285 -10.42950 -10.12264 -9.54193 -8.86743 -8.79798 -8.48318 -8.24720 -7.29160 -6.42321 -4.02433 1.73853 2.33127 3.13077 3.13983 3.19775 3.67772 3.79373 3.95156 4.09100 4.58677 4.64963 4.67056 4.82459 5.08334 5.12756 5.17748 5.20944 5.39648 5.48050 5.50492 5.55999 5.59954 5.71369 5.74171 5.78545 5.92340 5.97014 6.06307 6.13514 6.24089 6.29926 6.57803 6.71063 6.92966 7.01378 7.07686 7.25518 7.31163 7.54127 7.70997 7.94288 8.17358 8.97188 9.15374 9.69939 10.71545 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016199 B = 0.003934 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.089493 B = 7115.070185 C = 8641.814912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.130 3.870 3 C -0.147 4.147 4 O -0.557 6.557 5 C -0.156 4.156 6 C 0.125 3.875 7 N -0.746 5.746 8 C 0.552 3.448 9 O -0.500 6.500 10 C -0.227 4.227 11 C -0.039 4.039 12 C -0.232 4.232 13 C -0.051 4.051 14 C -0.238 4.238 15 C 0.189 3.811 16 O -0.124 6.124 17 C -0.404 4.404 18 H 0.094 0.906 19 C 0.044 3.956 20 N -0.832 5.832 21 Si 0.941 3.059 22 H -0.266 1.266 23 H -0.275 1.275 24 H -0.275 1.275 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.374 0.626 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.390 0.610 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.132 0.868 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.712 -2.436 1.473 16.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.089 3.911 3 C -0.204 4.204 4 O -0.362 6.362 5 C -0.194 4.194 6 C 0.002 3.998 7 N -0.402 5.402 8 C 0.341 3.659 9 O -0.374 6.374 10 C -0.232 4.232 11 C -0.058 4.058 12 C -0.251 4.251 13 C -0.070 4.070 14 C -0.257 4.257 15 C 0.129 3.871 16 O -0.022 6.022 17 C -0.480 4.480 18 H 0.112 0.888 19 C -0.163 4.163 20 N -0.463 5.463 21 Si 0.765 3.235 22 H -0.190 1.190 23 H -0.200 1.200 24 H -0.200 1.200 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.222 0.778 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.224 0.776 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.149 0.851 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.714 -1.144 0.334 15.759 hybrid contribution 0.201 -0.870 0.872 1.248 sum -15.513 -2.014 1.206 15.689 Atomic orbital electron populations 1.22488 0.95732 1.02353 1.02841 1.21126 0.92274 0.93293 0.84389 1.21865 1.03065 0.93210 1.02262 1.86615 1.77240 1.28760 1.43635 1.22491 0.96405 1.01376 0.99131 1.21213 0.92056 0.97959 0.88609 1.45923 1.07802 1.59387 1.27101 1.18237 0.81438 0.80428 0.85755 1.90954 1.54392 1.43706 1.48366 1.18880 0.91415 1.12658 1.00222 1.20750 0.97142 0.94554 0.93327 1.20454 0.95370 1.08843 1.00404 1.20890 0.93144 0.95716 0.97252 1.21159 1.00697 1.06128 0.97748 1.19281 0.89057 0.90178 0.88545 1.84181 1.16947 1.62305 1.38763 1.21551 0.80883 1.34387 1.11185 0.88824 1.25392 1.00163 0.95378 0.95411 1.70139 1.34885 1.28313 1.12961 0.85661 0.80452 0.78545 0.78821 1.18983 1.20013 1.20016 0.91540 0.91733 0.92374 0.90830 0.91961 0.91129 0.77843 0.91147 0.90519 0.91541 0.91278 0.77622 0.87127 0.87319 0.87209 0.85077 0.91902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.29 8.82 37.16 0.33 -0.97 16 2 C 0.13 1.26 1.09 -90.62 -0.10 1.16 16 3 C -0.15 -1.54 8.35 37.16 0.31 -1.23 16 4 O -0.56 -6.17 12.51 -35.23 -0.44 -6.61 16 5 C -0.16 -1.55 4.60 -26.73 -0.12 -1.67 16 6 C 0.13 1.86 5.08 -4.04 -0.02 1.84 16 7 N -0.75 -12.26 5.51 -61.35 -0.34 -12.60 16 8 C 0.55 12.45 7.76 -12.47 -0.10 12.35 16 9 O -0.50 -14.10 15.17 -16.57 -0.25 -14.36 16 10 C -0.23 -5.01 5.89 -104.81 -0.62 -5.63 16 11 C -0.04 -0.67 9.54 -39.20 -0.37 -1.04 16 12 C -0.23 -3.82 10.03 -39.61 -0.40 -4.21 16 13 C -0.05 -0.92 10.03 -39.54 -0.40 -1.31 16 14 C -0.24 -5.18 9.16 -39.44 -0.36 -5.54 16 15 C 0.19 4.77 6.66 -38.60 -0.26 4.51 16 16 O -0.12 -3.72 7.84 -21.08 -0.17 -3.88 16 17 C -0.40 -11.59 9.49 30.90 0.29 -11.29 16 18 H 0.09 2.44 5.21 -52.49 -0.27 2.16 16 19 C 0.04 1.25 5.49 -17.51 -0.10 1.16 16 20 N -0.83 -25.41 13.67 55.48 0.76 -24.65 16 21 Si 0.94 20.74 29.55 -169.99 -5.02 15.72 16 22 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 23 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 24 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.93 6.34 -51.93 -0.33 0.60 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.37 2.77 9.05 45.56 0.41 3.18 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 1.08 6.34 -51.93 -0.33 0.76 16 35 H 0.07 1.17 7.82 -51.93 -0.41 0.77 16 36 H 0.39 5.02 6.50 -40.82 -0.27 4.75 16 37 H 0.11 1.45 6.40 -52.49 -0.34 1.12 16 38 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 39 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 40 H 0.13 2.81 5.64 -52.49 -0.30 2.52 16 41 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 342.27 15.07 5.16 5.16 Total: -1.00 -36.24 342.27 -6.97 -43.21 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -4.76 Total: 9.87 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -1.91 Total: -11.87 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 0.42 Total: -37.25 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.86 Total: -24.85 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -36.24 -6.97 -43.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274837383.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.834 kcal (2) G-P(sol) polarization free energy of solvation -36.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds