Wall clock time and date at job start Tue Mar 31 2020 07:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47402 * 2 1 4 4 O 1.42902 * 109.47035 * 240.00500 * 2 1 3 5 5 C 1.53000 * 109.47363 * 120.00456 * 2 1 3 6 6 C 1.52997 * 109.47229 * 184.99560 * 5 2 1 7 7 N 1.46499 * 109.47058 * 179.97438 * 6 5 2 8 8 C 1.34776 * 120.00532 * 180.02562 * 7 6 5 9 9 O 1.21596 * 119.99483 * 0.02562 * 8 7 6 10 10 C 1.47529 * 120.00576 * 179.97438 * 8 7 6 11 11 C 1.39668 * 120.19410 * 0.02562 * 10 8 7 12 12 C 1.37835 * 119.91853 * 179.97438 * 11 10 8 13 13 C 1.38573 * 120.31903 * 0.02562 * 12 11 10 14 14 C 1.38022 * 120.40696 * 0.02562 * 13 12 11 15 15 C 1.38831 * 120.06839 * 359.95623 * 14 13 12 16 16 O 1.35527 * 120.16025 * 180.02562 * 15 14 13 17 17 C 1.34817 * 116.99627 * 354.39561 * 16 15 14 18 18 H 1.07998 * 120.00286 * 5.06815 * 17 16 15 19 19 C 1.38705 * 119.99676 * 185.06799 * 17 16 15 20 20 N 1.31514 * 119.99991 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99619 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47413 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47271 * 120.00166 * 21 19 17 24 24 H 1.48507 * 109.46838 * 239.99679 * 21 19 17 25 25 H 1.09001 * 109.46833 * 299.99825 * 1 2 3 26 26 H 1.09004 * 109.46711 * 59.99018 * 1 2 3 27 27 H 1.08994 * 109.47462 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47114 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47258 * 300.00332 * 3 2 1 30 30 H 1.09001 * 109.46983 * 60.00267 * 3 2 1 31 31 H 0.96713 * 113.99707 * 300.00169 * 4 2 1 32 32 H 1.09004 * 109.46986 * 64.99441 * 5 2 1 33 33 H 1.09000 * 109.46715 * 304.99987 * 5 2 1 34 34 H 1.08999 * 109.46796 * 60.00185 * 6 5 2 35 35 H 1.08995 * 109.47178 * 299.99712 * 6 5 2 36 36 H 0.97003 * 120.00039 * 0.02562 * 7 6 5 37 37 H 1.07997 * 120.04248 * 0.26955 * 11 10 8 38 38 H 1.07992 * 119.83718 * 179.97438 * 12 11 10 39 39 H 1.08000 * 119.79251 * 179.97438 * 13 12 11 40 40 H 1.07996 * 119.96390 * 179.97438 * 14 13 12 41 41 H 0.96997 * 120.00153 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 2.0401 -0.7213 1.2492 6 6 3.5649 -0.6135 1.3135 7 7 4.0532 -1.3036 2.5099 8 6 5.3740 -1.3390 2.7757 9 8 6.1603 -0.7977 2.0227 10 6 5.8657 -2.0336 3.9809 11 6 4.9660 -2.6563 4.8489 12 6 5.4317 -3.3040 5.9730 13 6 6.7895 -3.3405 6.2473 14 6 7.6902 -2.7286 5.3991 15 6 7.2393 -2.0719 4.2621 16 8 8.1221 -1.4709 3.4277 17 6 9.4126 -1.4461 3.8170 18 1 9.7157 -1.9631 4.7155 19 6 10.3511 -0.7565 3.0636 20 7 9.9821 -0.1274 1.9692 21 14 12.1393 -0.7227 3.6026 22 1 12.2930 -1.5023 4.8571 23 1 12.9878 -1.3205 2.5406 24 1 12.5585 0.6822 3.8389 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.7209 -1.5952 -1.2330 32 1 1.7516 -1.7716 1.2055 33 1 1.6054 -0.2619 2.1369 34 1 3.8532 0.4368 1.3573 35 1 3.9994 -1.0730 0.4258 36 1 3.4258 -1.7352 3.1109 37 1 3.9072 -2.6344 4.6372 38 1 4.7348 -3.7847 6.6435 39 1 7.1450 -3.8501 7.1307 40 1 8.7468 -2.7611 5.6200 41 1 10.6383 0.3552 1.4425 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274837383.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:23 Heat of formation + Delta-G solvation = -122.724524 kcal Electronic energy + Delta-G solvation = -23279.960402 eV Core-core repulsion = 19738.338134 eV Total energy + Delta-G solvation = -3541.622268 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.29527 -40.05395 -39.25648 -38.02073 -35.91942 -34.33433 -33.69902 -32.22753 -30.57258 -29.86832 -28.30425 -27.37880 -25.21319 -23.85718 -22.87315 -21.65459 -21.07008 -19.85348 -19.27515 -17.94915 -17.20347 -17.15303 -16.68708 -16.34337 -16.05091 -15.93632 -15.76420 -15.38757 -15.36442 -15.01144 -14.52381 -14.30778 -14.20371 -13.67407 -13.55035 -13.20760 -13.05578 -12.95997 -12.75950 -12.68034 -12.55209 -12.46962 -12.30100 -12.20672 -12.09583 -11.57131 -11.42283 -10.97670 -10.85016 -10.55090 -10.09582 -9.77152 -9.03546 -8.45020 -6.16429 0.12652 0.73007 1.31682 1.42684 1.51975 2.10116 2.15399 2.27287 2.87641 3.22748 3.35187 3.47288 3.75862 3.84307 3.99519 4.03468 4.10145 4.22887 4.29714 4.37161 4.52403 4.60343 4.65993 4.74931 4.87421 4.88225 4.96515 5.02301 5.04104 5.07571 5.11918 5.17390 5.31086 5.37121 5.48591 5.55747 5.61688 5.69905 5.95941 6.17700 6.72079 6.92227 6.94178 7.50093 7.80634 8.75906 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016199 B = 0.003934 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.089493 B = 7115.070185 C = 8641.814912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.127 3.873 3 C -0.152 4.152 4 O -0.582 6.582 5 C -0.141 4.141 6 C 0.125 3.875 7 N -0.717 5.717 8 C 0.543 3.457 9 O -0.572 6.572 10 C -0.246 4.246 11 C -0.029 4.029 12 C -0.200 4.200 13 C -0.040 4.040 14 C -0.259 4.259 15 C 0.148 3.852 16 O -0.191 6.191 17 C -0.428 4.428 18 H 0.108 0.892 19 C -0.024 4.024 20 N -0.907 5.907 21 Si 1.024 2.976 22 H -0.244 1.244 23 H -0.269 1.269 24 H -0.269 1.269 25 H 0.080 0.920 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.039 0.961 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.389 0.611 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.044 0.956 35 H 0.040 0.960 36 H 0.412 0.588 37 H 0.163 0.837 38 H 0.166 0.834 39 H 0.154 0.846 40 H 0.122 0.878 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.281 -4.845 4.993 21.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.086 3.914 3 C -0.209 4.209 4 O -0.391 6.391 5 C -0.179 4.179 6 C 0.001 3.999 7 N -0.372 5.372 8 C 0.333 3.667 9 O -0.452 6.452 10 C -0.251 4.251 11 C -0.047 4.047 12 C -0.218 4.218 13 C -0.058 4.058 14 C -0.278 4.278 15 C 0.093 3.907 16 O -0.093 6.093 17 C -0.504 4.504 18 H 0.125 0.875 19 C -0.222 4.222 20 N -0.542 5.542 21 Si 0.842 3.158 22 H -0.167 1.167 23 H -0.194 1.194 24 H -0.194 1.194 25 H 0.099 0.901 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.107 0.893 31 H 0.239 0.761 32 H 0.114 0.886 33 H 0.119 0.881 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.251 0.749 37 H 0.180 0.820 38 H 0.184 0.816 39 H 0.172 0.828 40 H 0.140 0.860 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -19.403 -3.623 3.926 20.125 hybrid contribution 0.889 -0.314 -0.015 0.943 sum -18.514 -3.937 3.911 19.328 Atomic orbital electron populations 1.22393 0.92999 1.03683 1.03421 1.21223 0.94132 0.92229 0.83775 1.21929 1.00946 0.94775 1.03272 1.86592 1.77969 1.30142 1.44407 1.22448 0.91738 1.03351 1.00326 1.21282 0.95795 0.96096 0.86717 1.45646 1.06045 1.58031 1.27486 1.18626 0.82823 0.79722 0.85487 1.90935 1.56707 1.46837 1.50700 1.19330 0.91295 1.13399 1.01092 1.21322 0.98825 0.92412 0.92136 1.21194 0.95548 1.05486 0.99578 1.21445 0.93389 0.93743 0.97249 1.21301 1.01429 1.07197 0.97852 1.20114 0.90170 0.90685 0.89750 1.84188 1.17718 1.66007 1.41437 1.22097 0.81480 1.34916 1.11885 0.87515 1.26792 1.05590 0.94647 0.95222 1.70338 1.36747 1.31564 1.15591 0.84486 0.73294 0.78948 0.79087 1.16737 1.19363 1.19379 0.90141 0.92017 0.90658 0.94172 0.91818 0.89336 0.76133 0.88634 0.88139 0.93745 0.94157 0.74928 0.81976 0.81637 0.82814 0.85985 0.92058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 8.82 71.98 0.63 -1.27 16 2 C 0.13 2.27 1.09 -10.80 -0.01 2.26 16 3 C -0.15 -3.21 8.35 71.98 0.60 -2.61 16 4 O -0.58 -12.69 12.51 -148.98 -1.86 -14.56 16 5 C -0.14 -2.43 4.60 30.59 0.14 -2.29 16 6 C 0.12 3.77 5.08 86.38 0.44 4.21 16 7 N -0.72 -22.95 5.51 -466.29 -2.57 -25.52 16 8 C 0.54 25.44 7.76 86.69 0.67 26.12 16 9 O -0.57 -35.21 15.17 16.88 0.26 -34.95 16 10 C -0.25 -10.86 5.89 -19.99 -0.12 -10.98 16 11 C -0.03 -0.85 9.54 22.52 0.21 -0.64 16 12 C -0.20 -5.23 10.03 22.25 0.22 -5.01 16 13 C -0.04 -1.25 10.03 22.30 0.22 -1.02 16 14 C -0.26 -11.17 9.16 22.36 0.20 -10.97 16 15 C 0.15 7.76 6.66 22.91 0.15 7.92 16 16 O -0.19 -12.43 7.84 0.74 0.01 -12.42 16 17 C -0.43 -26.39 9.49 67.93 0.64 -25.74 16 18 H 0.11 5.89 5.21 -2.91 -0.02 5.88 16 19 C -0.02 -1.42 5.49 84.85 0.47 -0.96 16 20 N -0.91 -60.57 13.67 21.62 0.30 -60.27 16 21 Si 1.02 45.02 29.55 68.60 2.03 47.05 16 22 H -0.24 -9.68 7.11 99.48 0.71 -8.97 16 23 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 24 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 25 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 27 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.04 1.10 6.34 -2.39 -0.02 1.09 16 29 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.39 5.30 9.05 -74.05 -0.67 4.63 16 32 H 0.10 1.22 8.14 -2.39 -0.02 1.21 16 33 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.04 1.56 6.34 -2.39 -0.02 1.54 16 35 H 0.04 1.46 7.82 -2.39 -0.02 1.44 16 36 H 0.41 9.04 6.50 -92.71 -0.60 8.44 16 37 H 0.16 3.10 6.40 -2.91 -0.02 3.08 16 38 H 0.17 2.72 8.06 -2.91 -0.02 2.70 16 39 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 40 H 0.12 5.37 5.64 -2.91 -0.02 5.35 16 41 H 0.27 16.50 8.31 -92.71 -0.77 15.73 16 Total: -1.00 -93.74 342.27 2.44 -91.30 By element: Atomic # 1 Polarization: 30.56 SS G_CDS: -0.20 Total: 30.35 kcal Atomic # 6 Polarization: -25.47 SS G_CDS: 4.49 Total: -20.98 kcal Atomic # 7 Polarization: -83.52 SS G_CDS: -2.27 Total: -85.79 kcal Atomic # 8 Polarization: -60.33 SS G_CDS: -1.60 Total: -61.93 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -93.74 2.44 -91.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274837383.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.421 kcal (2) G-P(sol) polarization free energy of solvation -93.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds