Wall clock time and date at job start Tue Mar 31 2020 07:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47001 * 2 1 4 4 O 1.42898 * 109.47007 * 239.99842 * 2 1 3 5 5 C 1.53004 * 109.46442 * 119.99672 * 2 1 3 6 6 C 1.50702 * 109.47105 * 60.00732 * 5 2 1 7 7 O 1.21277 * 119.99960 * 359.97438 * 6 5 2 8 8 N 1.34769 * 119.99776 * 180.02562 * 6 5 2 9 9 C 1.46508 * 120.00011 * 179.97438 * 8 6 5 10 10 C 1.50695 * 109.47103 * 179.97438 * 9 8 6 11 11 C 1.38299 * 119.93247 * 90.00118 * 10 9 8 12 12 C 1.38101 * 120.07425 * 179.97438 * 11 10 9 13 13 C 1.38886 * 119.92536 * 0.02562 * 12 11 10 14 14 O 1.35750 * 120.06440 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53777 * 14 13 12 16 16 H 1.07993 * 120.00518 * 354.94289 * 15 14 13 17 17 C 1.38663 * 119.99751 * 174.94575 * 15 14 13 18 18 N 1.31556 * 120.00220 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99821 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47264 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47375 * 119.99795 * 19 17 15 22 22 H 1.48506 * 109.47301 * 239.99793 * 19 17 15 23 23 C 1.38874 * 119.86623 * 0.27854 * 13 12 11 24 24 C 1.38106 * 119.92542 * 359.44577 * 23 13 12 25 25 H 1.09003 * 109.47457 * 300.00312 * 1 2 3 26 26 H 1.09004 * 109.46769 * 60.00458 * 1 2 3 27 27 H 1.08995 * 109.47293 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46845 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.46958 * 299.99677 * 3 2 1 30 30 H 1.09003 * 109.47270 * 59.99574 * 3 2 1 31 31 H 0.96700 * 113.99303 * 180.02562 * 4 2 1 32 32 H 1.08998 * 109.47672 * 299.99825 * 5 2 1 33 33 H 1.09005 * 109.46733 * 179.97438 * 5 2 1 34 34 H 0.97001 * 120.00514 * 359.97438 * 8 6 5 35 35 H 1.08998 * 109.46632 * 59.99915 * 9 8 6 36 36 H 1.08996 * 109.47144 * 299.99646 * 9 8 6 37 37 H 1.07999 * 119.96503 * 0.02562 * 11 10 9 38 38 H 1.07992 * 120.03608 * 180.02562 * 12 11 10 39 39 H 0.96996 * 120.00178 * 179.97438 * 18 17 15 40 40 H 1.07996 * 120.03745 * 179.72497 * 23 13 12 41 41 H 1.07997 * 119.96326 * 180.27708 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0399 -0.7212 1.2494 6 6 1.5376 -2.1421 1.2493 7 8 0.8401 -2.5386 0.3398 8 7 1.8626 -2.9717 2.2604 9 6 1.3739 -4.3529 2.2607 10 6 1.8762 -5.0632 3.4912 11 6 1.1277 -5.0421 4.6539 12 6 1.5850 -5.6926 5.7831 13 6 2.7982 -6.3679 5.7503 14 8 3.2501 -7.0086 6.8584 15 6 2.4228 -7.0490 7.9223 16 1 1.4843 -6.5153 7.8972 17 6 2.7770 -7.7759 9.0488 18 7 3.9201 -8.4264 9.0793 19 14 1.6306 -7.8324 10.5224 20 1 0.4179 -7.0240 10.2375 21 1 1.2367 -9.2391 10.7895 22 1 2.3258 -7.2787 11.7121 23 6 3.5505 -6.3819 4.5830 24 6 3.0849 -5.7343 3.4555 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1299 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 2.9703 -0.7121 -1.2326 32 1 1.6765 -0.2074 2.1393 33 1 3.1299 -0.7217 1.2492 34 1 2.4202 -2.6544 2.9880 35 1 1.7374 -4.8670 1.3710 36 1 0.2839 -4.3526 2.2604 37 1 0.1843 -4.5172 4.6788 38 1 0.9999 -5.6761 6.6907 39 1 4.1680 -8.9346 9.8674 40 1 4.4963 -6.9024 4.5557 41 1 3.6673 -5.7486 2.5461 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280909308.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:29 Heat of formation + Delta-G solvation = -99.505558 kcal Electronic energy + Delta-G solvation = -22562.611693 eV Core-core repulsion = 19021.996274 eV Total energy + Delta-G solvation = -3540.615418 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.12708 -39.14991 -37.76811 -36.76769 -34.36102 -32.87505 -32.38957 -30.40170 -30.23251 -28.35246 -27.50520 -25.80166 -24.56124 -22.07922 -21.10446 -20.62864 -20.17236 -18.10516 -17.63734 -16.98330 -16.54762 -15.80278 -15.58147 -15.02169 -14.66965 -14.60081 -14.47261 -14.20948 -13.74478 -13.63076 -13.45116 -12.98175 -12.81210 -12.56956 -12.43928 -12.35431 -12.16014 -11.95951 -11.76247 -11.54785 -11.42134 -11.03816 -10.91221 -10.79144 -10.71369 -10.49326 -10.30732 -9.58007 -9.44709 -8.93302 -8.90453 -8.31155 -7.34655 -6.55183 -4.14067 2.04999 2.10357 2.70878 3.05499 3.08083 3.13637 3.36970 3.88440 4.07211 4.41544 4.45714 4.60212 4.74331 4.97826 5.00444 5.11347 5.15560 5.24424 5.25126 5.35664 5.41322 5.57415 5.64228 5.67729 5.77835 5.78928 5.87253 5.95535 6.09865 6.28113 6.32654 6.56273 6.60450 6.78021 6.93588 7.12051 7.25086 7.32862 7.54887 7.62284 7.69849 7.89622 8.33598 8.90297 9.58387 10.62432 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.034518 B = 0.002487 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.970624 B =11255.419489 C =11507.683770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.145 3.855 3 C -0.179 4.179 4 O -0.543 6.543 5 C -0.172 4.172 6 C 0.508 3.492 7 O -0.525 6.525 8 N -0.726 5.726 9 C 0.180 3.820 10 C -0.214 4.214 11 C -0.051 4.051 12 C -0.237 4.237 13 C 0.160 3.840 14 O -0.174 6.174 15 C -0.393 4.393 16 H 0.094 0.906 17 C 0.040 3.960 18 N -0.859 5.859 19 Si 0.942 3.058 20 H -0.266 1.266 21 H -0.275 1.275 22 H -0.275 1.275 23 C -0.195 4.195 24 C -0.055 4.055 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.092 0.908 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.368 0.632 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.400 0.600 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.108 0.892 38 H 0.128 0.872 39 H 0.271 0.729 40 H 0.118 0.882 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.743 15.804 -12.253 20.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.104 3.896 3 C -0.237 4.237 4 O -0.348 6.348 5 C -0.213 4.213 6 C 0.294 3.706 7 O -0.401 6.401 8 N -0.378 5.378 9 C 0.057 3.943 10 C -0.216 4.216 11 C -0.070 4.070 12 C -0.256 4.256 13 C 0.105 3.895 14 O -0.076 6.076 15 C -0.469 4.469 16 H 0.111 0.889 17 C -0.165 4.165 18 N -0.493 5.493 19 Si 0.767 3.233 20 H -0.190 1.190 21 H -0.200 1.200 22 H -0.201 1.201 23 C -0.214 4.214 24 C -0.074 4.074 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.111 0.889 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.214 0.786 32 H 0.118 0.882 33 H 0.111 0.889 34 H 0.234 0.766 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.126 0.874 38 H 0.146 0.854 39 H 0.081 0.919 40 H 0.136 0.864 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.566 15.162 -12.795 20.158 hybrid contribution 0.409 0.208 1.454 1.524 sum -3.157 15.370 -11.341 19.361 Atomic orbital electron populations 1.21995 0.92358 1.05255 1.01365 1.20884 0.95619 0.89473 0.83627 1.22528 1.01361 0.96766 1.03013 1.86714 1.25656 1.79407 1.42998 1.22504 1.02785 0.94454 1.01544 1.20450 0.80841 0.87353 0.81988 1.90671 1.37271 1.76907 1.35297 1.46404 1.53734 1.12665 1.25019 1.19945 0.98265 0.80205 0.95851 1.19227 0.98547 1.08400 0.95382 1.20640 0.97805 0.96587 0.91981 1.21163 0.99088 1.05579 0.99781 1.19441 0.91679 0.90644 0.87707 1.83978 1.41337 1.63917 1.18387 1.21406 1.01834 1.32326 0.91367 0.88868 1.25327 0.97186 0.95365 0.98622 1.70042 1.20701 1.28971 1.29632 0.85624 0.79241 0.78582 0.79859 1.19040 1.20039 1.20070 1.20215 1.02069 1.07560 0.91604 1.20532 0.94599 0.95502 0.96733 0.92073 0.92404 0.88923 0.92332 0.91511 0.91523 0.78633 0.88242 0.88867 0.76623 0.91653 0.91724 0.87437 0.85420 0.91911 0.86378 0.86993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 8.52 37.16 0.32 -1.26 16 2 C 0.15 1.32 0.98 -90.62 -0.09 1.23 16 3 C -0.18 -1.17 8.82 37.16 0.33 -0.84 16 4 O -0.54 -5.95 11.88 -53.49 -0.64 -6.58 16 5 C -0.17 -1.44 4.95 -27.88 -0.14 -1.58 16 6 C 0.51 6.19 7.39 -10.99 -0.08 6.11 16 7 O -0.53 -8.36 12.96 -12.69 -0.16 -8.53 16 8 N -0.73 -8.61 5.55 -61.47 -0.34 -8.95 16 9 C 0.18 2.48 5.80 -5.19 -0.03 2.45 16 10 C -0.21 -3.38 5.25 -104.58 -0.55 -3.93 16 11 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 12 C -0.24 -4.85 9.17 -39.39 -0.36 -5.21 16 13 C 0.16 3.68 6.65 -39.11 -0.26 3.42 16 14 O -0.17 -4.78 9.76 0.05 0.00 -4.78 16 15 C -0.39 -10.63 9.49 30.89 0.29 -10.33 16 16 H 0.09 2.33 5.20 -52.49 -0.27 2.05 16 17 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 18 N -0.86 -24.55 13.67 55.48 0.76 -23.79 16 19 Si 0.94 19.91 29.55 -169.99 -5.02 14.89 16 20 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 21 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 22 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 23 C -0.20 -3.89 9.99 -39.39 -0.39 -4.28 16 24 C -0.05 -0.91 9.69 -39.61 -0.38 -1.30 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.09 1.24 5.51 -51.93 -0.29 0.95 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.37 2.61 9.04 45.56 0.41 3.02 16 32 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.40 4.14 8.46 -40.82 -0.35 3.79 16 35 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 36 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 37 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.13 2.64 5.64 -52.49 -0.30 2.35 16 39 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 40 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 41 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 346.07 15.07 5.22 5.22 Total: -1.00 -32.29 346.07 -7.01 -39.30 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -4.99 Total: 9.04 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: -1.83 Total: -15.81 kcal Atomic # 7 Polarization: -33.16 SS G_CDS: 0.42 Total: -32.74 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.80 Total: -19.89 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.29 -7.01 -39.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280909308.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.207 kcal (2) G-P(sol) polarization free energy of solvation -32.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds