Wall clock time and date at job start Tue Mar 31 2020 07:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47001 * 2 1 4 4 O 1.42898 * 109.47007 * 239.99842 * 2 1 3 5 5 C 1.53004 * 109.46442 * 119.99672 * 2 1 3 6 6 C 1.50702 * 109.47105 * 60.00732 * 5 2 1 7 7 O 1.21277 * 119.99960 * 359.97438 * 6 5 2 8 8 N 1.34769 * 119.99776 * 180.02562 * 6 5 2 9 9 C 1.46508 * 120.00011 * 179.97438 * 8 6 5 10 10 C 1.50695 * 109.47103 * 179.97438 * 9 8 6 11 11 C 1.38299 * 119.93247 * 90.00118 * 10 9 8 12 12 C 1.38101 * 120.07425 * 179.97438 * 11 10 9 13 13 C 1.38886 * 119.92536 * 0.02562 * 12 11 10 14 14 O 1.35750 * 120.06440 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53777 * 14 13 12 16 16 H 1.07993 * 120.00518 * 354.94289 * 15 14 13 17 17 C 1.38663 * 119.99751 * 174.94575 * 15 14 13 18 18 N 1.31556 * 120.00220 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99821 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47264 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47375 * 119.99795 * 19 17 15 22 22 H 1.48506 * 109.47301 * 239.99793 * 19 17 15 23 23 C 1.38874 * 119.86623 * 0.27854 * 13 12 11 24 24 C 1.38106 * 119.92542 * 359.44577 * 23 13 12 25 25 H 1.09003 * 109.47457 * 300.00312 * 1 2 3 26 26 H 1.09004 * 109.46769 * 60.00458 * 1 2 3 27 27 H 1.08995 * 109.47293 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46845 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.46958 * 299.99677 * 3 2 1 30 30 H 1.09003 * 109.47270 * 59.99574 * 3 2 1 31 31 H 0.96700 * 113.99303 * 180.02562 * 4 2 1 32 32 H 1.08998 * 109.47672 * 299.99825 * 5 2 1 33 33 H 1.09005 * 109.46733 * 179.97438 * 5 2 1 34 34 H 0.97001 * 120.00514 * 359.97438 * 8 6 5 35 35 H 1.08998 * 109.46632 * 59.99915 * 9 8 6 36 36 H 1.08996 * 109.47144 * 299.99646 * 9 8 6 37 37 H 1.07999 * 119.96503 * 0.02562 * 11 10 9 38 38 H 1.07992 * 120.03608 * 180.02562 * 12 11 10 39 39 H 0.96996 * 120.00178 * 179.97438 * 18 17 15 40 40 H 1.07996 * 120.03745 * 179.72497 * 23 13 12 41 41 H 1.07997 * 119.96326 * 180.27708 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0399 -0.7212 1.2494 6 6 1.5376 -2.1421 1.2493 7 8 0.8401 -2.5386 0.3398 8 7 1.8626 -2.9717 2.2604 9 6 1.3739 -4.3529 2.2607 10 6 1.8762 -5.0632 3.4912 11 6 1.1277 -5.0421 4.6539 12 6 1.5850 -5.6926 5.7831 13 6 2.7982 -6.3679 5.7503 14 8 3.2501 -7.0086 6.8584 15 6 2.4228 -7.0490 7.9223 16 1 1.4843 -6.5153 7.8972 17 6 2.7770 -7.7759 9.0488 18 7 3.9201 -8.4264 9.0793 19 14 1.6306 -7.8324 10.5224 20 1 0.4179 -7.0240 10.2375 21 1 1.2367 -9.2391 10.7895 22 1 2.3258 -7.2787 11.7121 23 6 3.5505 -6.3819 4.5830 24 6 3.0849 -5.7343 3.4555 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1299 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 2.9703 -0.7121 -1.2326 32 1 1.6765 -0.2074 2.1393 33 1 3.1299 -0.7217 1.2492 34 1 2.4202 -2.6544 2.9880 35 1 1.7374 -4.8670 1.3710 36 1 0.2839 -4.3526 2.2604 37 1 0.1843 -4.5172 4.6788 38 1 0.9999 -5.6761 6.6907 39 1 4.1680 -8.9346 9.8674 40 1 4.4963 -6.9024 4.5557 41 1 3.6673 -5.7486 2.5461 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280909308.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:29 Heat of formation + Delta-G solvation = -122.700111 kcal Electronic energy + Delta-G solvation = -22563.617484 eV Core-core repulsion = 19021.996274 eV Total energy + Delta-G solvation = -3541.621210 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.13757 -40.69032 -38.81782 -38.15280 -35.55509 -34.27824 -33.60126 -31.86728 -31.60413 -29.27767 -28.14268 -27.56105 -25.94977 -23.65289 -22.28643 -21.79880 -21.00209 -19.87951 -18.94638 -18.35422 -17.42163 -16.74688 -16.65668 -16.34602 -16.21074 -15.73844 -15.61481 -15.50187 -15.22589 -15.03127 -14.55844 -14.35639 -14.20956 -13.73456 -13.45218 -13.22388 -13.06950 -13.04674 -12.90454 -12.66945 -12.56577 -12.40615 -12.31166 -12.24699 -12.09101 -11.62053 -11.20551 -11.04223 -10.84417 -10.49971 -9.95949 -9.81437 -9.00638 -8.48989 -6.17104 0.54557 0.56799 1.35867 1.43117 1.53695 1.79306 2.16555 2.35397 2.85857 3.16136 3.45631 3.48715 3.72871 3.86574 3.94952 4.02511 4.11340 4.16799 4.31465 4.44882 4.56181 4.62976 4.67638 4.77201 4.79849 4.81025 4.95100 5.03583 5.07534 5.13238 5.14011 5.25946 5.32192 5.42699 5.51816 5.62483 5.68631 5.74863 6.01042 6.15351 6.69372 6.96048 7.00512 7.41356 7.75311 8.74092 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.034518 B = 0.002487 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.970624 B =11255.419489 C =11507.683770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.140 3.860 3 C -0.171 4.171 4 O -0.571 6.571 5 C -0.165 4.165 6 C 0.506 3.494 7 O -0.565 6.565 8 N -0.720 5.720 9 C 0.185 3.815 10 C -0.181 4.181 11 C -0.047 4.047 12 C -0.243 4.243 13 C 0.122 3.878 14 O -0.229 6.229 15 C -0.413 4.413 16 H 0.104 0.896 17 C -0.022 4.022 18 N -0.919 5.919 19 Si 1.018 2.982 20 H -0.251 1.251 21 H -0.270 1.270 22 H -0.268 1.268 23 C -0.204 4.204 24 C -0.045 4.045 25 H 0.079 0.921 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.382 0.618 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.410 0.590 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.138 0.862 38 H 0.120 0.880 39 H 0.273 0.727 40 H 0.115 0.885 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.621 18.375 -13.284 22.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.099 3.901 3 C -0.229 4.229 4 O -0.379 6.379 5 C -0.205 4.205 6 C 0.294 3.706 7 O -0.444 6.444 8 N -0.373 5.373 9 C 0.062 3.938 10 C -0.182 4.182 11 C -0.065 4.065 12 C -0.262 4.262 13 C 0.071 3.929 14 O -0.135 6.135 15 C -0.489 4.489 16 H 0.121 0.879 17 C -0.220 4.220 18 N -0.557 5.557 19 Si 0.838 3.162 20 H -0.174 1.174 21 H -0.195 1.195 22 H -0.193 1.193 23 C -0.223 4.223 24 C -0.063 4.063 25 H 0.098 0.902 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.230 0.770 32 H 0.141 0.859 33 H 0.138 0.862 34 H 0.246 0.754 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.156 0.844 38 H 0.138 0.862 39 H 0.082 0.918 40 H 0.133 0.867 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.440 17.783 -13.867 22.984 hybrid contribution 0.621 -0.423 1.376 1.568 sum -3.820 17.360 -12.491 21.726 Atomic orbital electron populations 1.22002 0.93859 1.03251 1.02102 1.21004 0.94673 0.90992 0.83432 1.22443 1.02360 0.94703 1.03387 1.86678 1.27180 1.79951 1.44048 1.22536 1.04338 0.91500 1.02086 1.21117 0.79884 0.88638 0.80973 1.90679 1.39015 1.77867 1.36794 1.46243 1.53794 1.11730 1.25549 1.19798 0.98344 0.81274 0.94367 1.19514 0.97234 1.05918 0.95535 1.20930 0.98898 0.95683 0.90989 1.21242 0.98293 1.05826 1.00846 1.19993 0.93476 0.91655 0.87807 1.83948 1.42860 1.66869 1.19850 1.21869 1.02359 1.32732 0.91914 0.87903 1.26585 0.98922 0.94779 1.01709 1.70181 1.23283 1.31293 1.30938 0.84530 0.77306 0.78864 0.75536 1.17391 1.19530 1.19320 1.20447 1.02004 1.08049 0.91814 1.20870 0.94930 0.93872 0.96621 0.90203 0.92901 0.92139 0.90694 0.92156 0.90165 0.77001 0.85899 0.86170 0.75406 0.91461 0.91635 0.84396 0.86203 0.91792 0.86672 0.83598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 8.52 71.98 0.61 -2.34 16 2 C 0.14 2.16 0.98 -10.79 -0.01 2.15 16 3 C -0.17 -1.64 8.82 71.98 0.63 -1.00 16 4 O -0.57 -11.45 11.88 -131.53 -1.56 -13.02 16 5 C -0.16 -2.10 4.95 29.85 0.15 -1.95 16 6 C 0.51 10.79 7.39 87.66 0.65 11.44 16 7 O -0.56 -17.02 12.96 14.43 0.19 -16.83 16 8 N -0.72 -14.38 5.55 -466.80 -2.59 -16.97 16 9 C 0.19 4.46 5.80 85.63 0.50 4.96 16 10 C -0.18 -5.13 5.25 -19.84 -0.10 -5.23 16 11 C -0.05 -1.47 9.69 22.25 0.22 -1.25 16 12 C -0.24 -9.89 9.17 22.39 0.21 -9.69 16 13 C 0.12 5.74 6.65 22.58 0.15 5.89 16 14 O -0.23 -13.32 9.76 -22.72 -0.22 -13.55 16 15 C -0.41 -23.29 9.49 67.92 0.64 -22.65 16 16 H 0.10 5.31 5.20 -2.91 -0.02 5.29 16 17 C -0.02 -1.23 5.49 84.84 0.47 -0.76 16 18 N -0.92 -55.27 13.67 21.62 0.30 -54.97 16 19 Si 1.02 41.73 29.55 68.60 2.03 43.76 16 20 H -0.25 -9.44 7.11 99.48 0.71 -8.73 16 21 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 22 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 23 C -0.20 -8.10 9.99 22.39 0.22 -7.88 16 24 C -0.04 -1.36 9.69 22.25 0.22 -1.15 16 25 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 27 H 0.06 1.57 5.51 -2.39 -0.01 1.56 16 28 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.38 4.55 9.04 -74.06 -0.67 3.88 16 32 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.12 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.41 6.72 8.46 -92.71 -0.78 5.94 16 35 H 0.07 1.67 8.08 -2.39 -0.02 1.65 16 36 H 0.07 1.64 8.08 -2.39 -0.02 1.62 16 37 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 38 H 0.12 5.01 5.64 -2.91 -0.02 4.99 16 39 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 40 H 0.12 4.56 8.06 -2.91 -0.02 4.54 16 41 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -75.44 346.07 2.29 -73.15 By element: Atomic # 1 Polarization: 28.28 SS G_CDS: -0.39 Total: 27.89 kcal Atomic # 6 Polarization: -34.01 SS G_CDS: 4.55 Total: -29.47 kcal Atomic # 7 Polarization: -69.65 SS G_CDS: -2.29 Total: -71.95 kcal Atomic # 8 Polarization: -41.79 SS G_CDS: -1.60 Total: -43.39 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -75.44 2.29 -73.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280909308.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.547 kcal (2) G-P(sol) polarization free energy of solvation -75.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds