Wall clock time and date at job start Tue Mar 31 2020 06:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35801 * 117.00239 * 2 1 4 4 C 1.38834 * 119.92721 * 359.97438 * 3 2 1 5 5 C 1.37789 * 120.14576 * 179.97438 * 4 3 2 6 6 C 1.39695 * 120.00919 * 0.02562 * 5 4 3 7 7 C 1.47608 * 120.07391 * 180.02562 * 6 5 4 8 8 O 1.21584 * 120.00168 * 130.02519 * 7 6 5 9 9 N 1.34772 * 120.00143 * 310.02535 * 7 6 5 10 10 C 1.46501 * 119.99770 * 4.42403 * 9 7 6 11 11 C 1.46499 * 120.00295 * 184.42787 * 9 7 6 12 12 C 1.50695 * 109.47161 * 89.99904 * 11 9 7 13 13 H 1.08005 * 120.00485 * 359.97438 * 12 11 9 14 14 C 1.37881 * 120.00165 * 180.02562 * 12 11 9 15 15 N 1.31514 * 119.99736 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00211 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47426 * 59.99744 * 16 14 12 18 18 H 1.48500 * 109.47004 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46818 * 299.99575 * 16 14 12 20 20 C 1.39731 * 119.85383 * 0.02562 * 6 5 4 21 21 C 1.50703 * 120.07587 * 179.97438 * 20 6 5 22 22 C 1.38143 * 119.85235 * 359.72098 * 20 6 5 23 23 O 1.36007 * 120.00198 * 180.27886 * 22 20 6 24 24 C 1.42902 * 116.99523 * 270.25637 * 23 22 20 25 25 H 1.09000 * 109.46919 * 60.00371 * 1 2 3 26 26 H 1.09003 * 109.46652 * 300.00427 * 1 2 3 27 27 H 1.08998 * 109.47322 * 180.02562 * 1 2 3 28 28 H 1.08000 * 119.92417 * 359.97438 * 4 3 2 29 29 H 1.08006 * 119.99415 * 180.02562 * 5 4 3 30 30 H 1.09008 * 109.47265 * 93.08596 * 10 9 7 31 31 H 1.09002 * 109.47649 * 213.08424 * 10 9 7 32 32 H 1.08997 * 109.47365 * 333.08472 * 10 9 7 33 33 H 1.09002 * 109.47059 * 210.00024 * 11 9 7 34 34 H 1.09000 * 109.46982 * 329.99487 * 11 9 7 35 35 H 0.96999 * 120.00089 * 180.02562 * 15 14 12 36 36 H 1.08994 * 109.47448 * 84.68267 * 21 20 6 37 37 H 1.08991 * 109.47510 * 204.69093 * 21 20 6 38 38 H 1.09004 * 109.46771 * 324.68713 * 21 20 6 39 39 H 1.08997 * 109.46610 * 180.02562 * 24 23 22 40 40 H 1.09003 * 109.46891 * 299.99840 * 24 23 22 41 41 H 1.08996 * 109.47482 * 59.99968 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2100 0.0000 4 6 1.2880 2.3734 -0.0005 5 6 1.9089 3.6035 0.0000 6 6 3.3037 3.6821 0.0005 7 6 3.9703 4.9990 0.0017 8 8 4.8488 5.2350 0.8084 9 7 3.6053 5.9399 -0.8916 10 6 2.4825 5.6917 -1.7993 11 6 4.3313 7.2108 -0.9549 12 6 5.4740 7.0885 -1.9297 13 1 5.6429 6.1571 -2.4497 14 6 6.3046 8.1653 -2.1569 15 7 6.0992 9.2993 -1.5233 16 14 7.7206 8.0139 -3.3658 17 1 7.1891 7.6806 -4.7117 18 1 8.4565 9.3022 -3.4298 19 1 8.6416 6.9389 -2.9171 20 6 4.0663 2.5112 0.0000 21 6 5.5713 2.5902 0.0000 22 6 3.4377 1.2811 0.0048 23 8 4.1771 0.1396 0.0100 24 6 4.5352 -0.4071 -1.2608 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 0.2097 2.3141 -0.0014 29 1 1.3172 4.5070 0.0000 30 1 1.5655 6.0832 -1.3586 31 1 2.6685 6.1881 -2.7517 32 1 2.3778 4.6192 -1.9630 33 1 3.6551 7.9994 -1.2848 34 1 4.7210 7.4562 0.0330 35 1 6.6833 10.0570 -1.6834 36 1 5.9292 2.7039 1.0232 37 1 5.9831 1.6771 -0.4297 38 1 5.8901 3.4470 -0.5937 39 1 5.1216 -1.3140 -1.1139 40 1 3.6314 -0.6460 -1.8213 41 1 5.1254 0.3215 -1.8166 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286097711.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:28 Heat of formation + Delta-G solvation = -99.586867 kcal Electronic energy + Delta-G solvation = -24061.001363 eV Core-core repulsion = 20520.382419 eV Total energy + Delta-G solvation = -3540.618944 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.91531 -40.54874 -39.25467 -37.71257 -36.67503 -34.73633 -33.32014 -31.60110 -29.84017 -28.67383 -28.24646 -27.43560 -26.96931 -25.36322 -23.61112 -22.46848 -20.51982 -18.99235 -18.69646 -18.57188 -18.06379 -17.21737 -17.10885 -16.96065 -16.26964 -16.12229 -15.89377 -15.76440 -14.90354 -14.81592 -14.63700 -14.33431 -14.18037 -13.87875 -13.59304 -13.44580 -13.26178 -13.14477 -13.07381 -12.90437 -12.77856 -12.65465 -12.54470 -12.20473 -11.97439 -11.85952 -11.71975 -11.13251 -10.66249 -10.64556 -9.78896 -9.47503 -9.19539 -8.22999 -6.37996 -0.07506 0.06463 1.36255 1.40479 1.47744 1.76566 2.15164 2.20354 2.38709 2.56233 2.85527 3.06668 3.59838 3.69379 3.87917 3.98576 4.21701 4.36302 4.39707 4.44529 4.45767 4.47195 4.49013 4.58944 4.60575 4.67030 4.75985 4.79657 4.87769 4.93724 5.02212 5.08109 5.13615 5.23328 5.34970 5.42697 5.54451 5.81738 6.04798 6.10924 6.56759 6.66571 6.72556 7.24864 7.40831 8.84059 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.021847 B = 0.004252 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.335218 B = 6584.178419 C = 7237.096645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.319 6.319 3 C 0.133 3.867 4 C -0.193 4.193 5 C -0.042 4.042 6 C -0.165 4.165 7 C 0.548 3.452 8 O -0.588 6.588 9 N -0.600 5.600 10 C 0.075 3.925 11 C 0.259 3.741 12 C -0.546 4.546 13 H 0.052 0.948 14 C 0.010 3.990 15 N -0.927 5.927 16 Si 0.966 3.034 17 H -0.260 1.260 18 H -0.277 1.277 19 H -0.278 1.278 20 C -0.033 4.033 21 C -0.104 4.104 22 C 0.043 3.957 23 O -0.336 6.336 24 C 0.028 3.972 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.120 0.880 28 H 0.179 0.821 29 H 0.156 0.844 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.029 0.971 34 H 0.001 0.999 35 H 0.268 0.732 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.045 0.955 39 H 0.115 0.885 40 H 0.053 0.947 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.674 -19.784 -1.809 24.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.232 6.232 3 C 0.086 3.914 4 C -0.211 4.211 5 C -0.061 4.061 6 C -0.168 4.168 7 C 0.337 3.663 8 O -0.469 6.469 9 N -0.331 5.331 10 C -0.067 4.067 11 C 0.138 3.862 12 C -0.584 4.584 13 H 0.070 0.930 14 C -0.189 4.189 15 N -0.566 5.566 16 Si 0.790 3.210 17 H -0.184 1.184 18 H -0.202 1.202 19 H -0.203 1.203 20 C -0.034 4.034 21 C -0.160 4.160 22 C -0.002 4.002 23 O -0.253 6.253 24 C -0.066 4.066 25 H 0.093 0.907 26 H 0.088 0.912 27 H 0.139 0.861 28 H 0.196 0.804 29 H 0.174 0.826 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.047 0.953 34 H 0.019 0.981 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.064 0.936 39 H 0.133 0.867 40 H 0.071 0.929 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -14.043 -19.751 -1.261 24.267 hybrid contribution 0.912 0.773 -0.534 1.310 sum -13.130 -18.978 -1.795 23.147 Atomic orbital electron populations 1.23508 0.75790 1.06008 1.02959 1.86111 1.23936 1.25529 1.87616 1.19591 0.90906 0.86044 0.94876 1.21363 1.01884 0.89798 1.08069 1.21366 0.91471 0.99420 0.93802 1.19589 0.95151 0.91415 1.10684 1.18662 0.82257 0.84646 0.80707 1.90717 1.34046 1.81224 1.40962 1.48076 1.33187 1.16923 1.34887 1.22097 0.88015 1.02779 0.93801 1.18806 0.91103 0.80493 0.95758 1.21652 1.13875 0.98095 1.24787 0.92984 1.25832 1.00271 0.94674 0.98103 1.70039 1.40064 1.03158 1.43372 0.85496 0.78678 0.77482 0.79357 1.18435 1.20200 1.20327 1.19987 0.96716 0.90867 0.95846 1.20627 0.90603 1.02126 1.02664 1.17593 0.87288 0.85646 1.09647 1.86080 1.70743 1.37663 1.30831 1.23208 1.00354 0.99156 0.83901 0.90725 0.91203 0.86147 0.80377 0.82638 0.90240 0.91400 0.89574 0.95314 0.98110 0.92317 0.91094 0.89586 0.93564 0.86658 0.92863 0.93729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.81 113.37 1.11 1.22 16 2 O -0.32 -6.47 10.27 -77.31 -0.79 -7.26 16 3 C 0.13 3.18 6.71 22.69 0.15 3.34 16 4 C -0.19 -3.79 9.01 22.31 0.20 -3.59 16 5 C -0.04 -1.05 7.62 22.52 0.17 -0.88 16 6 C -0.16 -5.75 4.86 -20.09 -0.10 -5.85 16 7 C 0.55 24.78 6.29 86.72 0.55 25.33 16 8 O -0.59 -32.33 15.41 -3.98 -0.06 -32.39 16 9 N -0.60 -26.56 2.86 -854.84 -2.44 -29.00 16 10 C 0.08 2.33 9.11 127.77 1.16 3.49 16 11 C 0.26 14.26 5.21 85.63 0.45 14.70 16 12 C -0.55 -31.88 9.39 25.60 0.24 -31.64 16 13 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 14 C 0.01 0.61 5.46 84.66 0.46 1.07 16 15 N -0.93 -56.37 13.29 21.45 0.28 -56.09 16 16 Si 0.97 45.14 29.54 68.60 2.03 47.17 16 17 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 18 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 19 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 20 C -0.03 -1.12 5.92 -19.53 -0.12 -1.23 16 21 C -0.10 -3.74 8.72 71.24 0.62 -3.12 16 22 C 0.04 1.26 5.70 22.53 0.13 1.38 16 23 O -0.34 -9.45 9.34 -79.61 -0.74 -10.19 16 24 C 0.03 0.56 10.73 113.37 1.22 1.78 16 25 H 0.07 0.49 7.65 -2.39 -0.02 0.47 16 26 H 0.07 0.54 7.65 -2.39 -0.02 0.52 16 27 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.18 1.96 6.27 -2.91 -0.02 1.94 16 29 H 0.16 3.21 6.65 -2.91 -0.02 3.19 16 30 H 0.08 1.93 7.59 -2.38 -0.02 1.92 16 31 H 0.07 2.18 8.10 -2.39 -0.02 2.16 16 32 H 0.09 2.27 5.71 -2.39 -0.01 2.26 16 33 H 0.03 1.58 8.07 -2.39 -0.02 1.56 16 34 H 0.00 0.05 7.36 -2.39 -0.02 0.03 16 35 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 36 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 37 H 0.09 2.59 6.22 -2.39 -0.01 2.57 16 38 H 0.05 1.93 7.08 -2.38 -0.02 1.91 16 39 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.04 0.92 7.33 -2.39 -0.02 0.90 16 Total: -1.00 -79.08 340.93 5.56 -73.53 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: 1.04 Total: 8.23 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: 6.25 Total: 6.01 kcal Atomic # 7 Polarization: -82.93 SS G_CDS: -2.16 Total: -85.09 kcal Atomic # 8 Polarization: -48.25 SS G_CDS: -1.60 Total: -49.85 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -79.08 5.56 -73.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286097711.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.062 kcal (2) G-P(sol) polarization free energy of solvation -79.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds