Wall clock time and date at job start Tue Mar 31 2020 06:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35801 * 117.00188 * 2 1 4 4 C 1.38835 * 119.92420 * 359.97438 * 3 2 1 5 5 C 1.37795 * 120.14551 * 179.97438 * 4 3 2 6 6 C 1.39706 * 120.00368 * 0.02562 * 5 4 3 7 7 C 1.47601 * 120.06786 * 179.97438 * 6 5 4 8 8 O 1.21588 * 119.99951 * 173.74698 * 7 6 5 9 9 N 1.34773 * 120.00282 * 353.47862 * 7 6 5 10 10 C 1.46503 * 120.00098 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.46861 * 324.99140 * 10 9 7 12 12 C 1.52996 * 109.47379 * 84.99573 * 10 9 7 13 13 C 1.50698 * 109.47203 * 204.99714 * 10 9 7 14 14 H 1.08006 * 119.99609 * 359.97438 * 13 10 9 15 15 C 1.37879 * 120.00263 * 179.97438 * 13 10 9 16 16 N 1.31514 * 119.99814 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 119.99917 * 179.97438 * 15 13 10 18 18 H 1.48497 * 109.47359 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46541 * 120.00402 * 17 15 13 20 20 H 1.48495 * 109.47132 * 240.00080 * 17 15 13 21 21 C 1.39735 * 119.85641 * 0.22517 * 6 5 4 22 22 C 1.50696 * 120.07046 * 179.72467 * 21 6 5 23 23 C 1.38136 * 119.85068 * 359.47594 * 21 6 5 24 24 O 1.35999 * 120.00164 * 180.24549 * 23 21 6 25 25 C 1.42902 * 117.00421 * 270.32513 * 24 23 21 26 26 H 1.09002 * 109.47547 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47016 * 299.99905 * 1 2 3 28 28 H 1.08998 * 109.47157 * 60.00030 * 1 2 3 29 29 H 1.07995 * 119.92628 * 359.97438 * 4 3 2 30 30 H 1.08001 * 119.99528 * 179.97438 * 5 4 3 31 31 H 0.97000 * 120.00352 * 359.97438 * 9 7 6 32 32 H 1.09001 * 109.47478 * 59.99944 * 12 10 9 33 33 H 1.09002 * 109.47067 * 180.02562 * 12 10 9 34 34 H 1.09002 * 109.47140 * 299.99978 * 12 10 9 35 35 H 0.96997 * 119.99659 * 179.97438 * 16 15 13 36 36 H 1.09004 * 109.46935 * 83.40285 * 22 21 6 37 37 H 1.09003 * 109.47229 * 203.40168 * 22 21 6 38 38 H 1.08994 * 109.47421 * 323.40268 * 22 21 6 39 39 H 1.09002 * 109.46813 * 299.99414 * 25 24 23 40 40 H 1.08997 * 109.47180 * 59.99873 * 25 24 23 41 41 H 1.08995 * 109.47125 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 6 1.2879 2.3734 -0.0005 5 6 1.9088 3.6035 0.0000 6 6 3.3036 3.6821 0.0005 7 6 3.9701 4.9990 0.0005 8 8 5.1785 5.0688 0.1157 9 7 3.2399 6.1239 -0.1325 10 6 3.9016 7.4310 -0.1331 11 1 4.7520 7.4080 0.5483 12 6 4.3891 7.7553 -1.5466 13 6 2.9261 8.4880 0.3166 14 1 1.9143 8.2136 0.5765 15 6 3.3253 9.8054 0.3964 16 7 4.5572 10.1395 0.0795 17 14 2.1159 11.1156 0.9533 18 1 0.8043 10.4852 1.2488 19 1 2.6332 11.7784 2.1774 20 1 1.9491 12.1249 -0.1232 21 6 4.0663 2.5112 -0.0042 22 6 5.5711 2.5903 -0.0099 23 6 3.4377 1.2812 0.0015 24 8 4.1770 0.1397 0.0019 25 6 4.5311 -0.4045 -1.2711 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 0.2096 2.3141 -0.0014 30 1 1.3170 4.5070 -0.0008 31 1 2.2763 6.0681 -0.2287 32 1 3.5386 7.7783 -2.2280 33 1 4.8818 8.7276 -1.5469 34 1 5.0947 6.9908 -1.8719 35 1 4.8378 11.0663 0.1353 36 1 5.9317 2.7258 1.0098 37 1 5.9819 1.6682 -0.4211 38 1 5.8883 3.4342 -0.6225 39 1 3.6255 -0.6425 -1.8291 40 1 5.1195 0.3252 -1.8272 41 1 5.1180 -1.3118 -1.1278 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287113065.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:43 Heat of formation + Delta-G solvation = -84.736933 kcal Electronic energy + Delta-G solvation = -23677.357940 eV Core-core repulsion = 20137.382937 eV Total energy + Delta-G solvation = -3539.975003 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.77392 -39.07296 -38.26609 -36.54076 -34.89233 -32.63744 -31.86635 -30.50458 -28.95646 -27.56186 -27.30854 -26.02787 -25.26108 -23.36970 -21.71204 -20.81881 -19.57054 -18.28331 -17.69923 -16.94580 -16.59355 -16.17947 -15.53905 -15.23343 -15.15859 -14.93390 -14.40986 -14.28742 -13.81908 -13.50591 -13.24643 -12.84843 -12.71555 -12.40910 -12.23202 -12.10326 -11.93463 -11.87029 -11.60284 -11.12115 -11.04381 -11.02208 -10.91878 -10.67630 -10.29773 -10.24756 -10.08412 -9.05202 -8.89559 -8.69035 -8.54221 -8.25562 -7.86008 -6.13412 -4.22615 0.96982 1.15656 2.99024 3.09878 3.22957 3.30822 3.33260 3.68594 4.07452 4.13696 4.37394 4.64996 4.77542 4.90402 4.96564 5.09768 5.18428 5.19622 5.22637 5.24437 5.25894 5.42278 5.52389 5.63087 5.88972 6.02168 6.08867 6.19221 6.33188 6.51275 6.72352 6.83469 6.96442 6.97352 7.14589 7.45432 7.54930 7.56091 7.68838 7.91105 8.14060 8.64744 8.77034 9.10217 9.44990 10.92652 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.023933 B = 0.003712 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.672042 B = 7540.843424 C = 8466.681545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.306 6.306 3 C 0.130 3.870 4 C -0.215 4.215 5 C -0.046 4.046 6 C -0.153 4.153 7 C 0.546 3.454 8 O -0.545 6.545 9 N -0.703 5.703 10 C 0.264 3.736 11 H 0.051 0.949 12 C -0.147 4.147 13 C -0.534 4.534 14 H 0.061 0.939 15 C 0.066 3.934 16 N -0.883 5.883 17 Si 0.901 3.099 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.004 4.004 22 C -0.115 4.115 23 C 0.045 3.955 24 O -0.319 6.319 25 C 0.032 3.968 26 H 0.099 0.901 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.387 0.613 32 H 0.026 0.974 33 H 0.090 0.910 34 H 0.015 0.985 35 H 0.264 0.736 36 H 0.080 0.920 37 H 0.055 0.945 38 H 0.102 0.898 39 H 0.044 0.956 40 H 0.046 0.954 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.240 -18.892 -2.883 20.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.219 6.219 3 C 0.084 3.916 4 C -0.233 4.233 5 C -0.064 4.064 6 C -0.157 4.157 7 C 0.332 3.668 8 O -0.425 6.425 9 N -0.351 5.351 10 C 0.163 3.837 11 H 0.069 0.931 12 C -0.205 4.205 13 C -0.572 4.572 14 H 0.079 0.921 15 C -0.137 4.137 16 N -0.520 5.520 17 Si 0.729 3.271 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.006 4.006 22 C -0.171 4.171 23 C 0.000 4.000 24 O -0.236 6.236 25 C -0.062 4.062 26 H 0.118 0.882 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.154 0.846 30 H 0.153 0.847 31 H 0.220 0.780 32 H 0.045 0.955 33 H 0.109 0.891 34 H 0.034 0.966 35 H 0.074 0.926 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.120 0.880 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.106 -18.922 -2.663 20.061 hybrid contribution -1.634 0.921 0.027 1.876 sum -7.740 -18.001 -2.636 19.771 Atomic orbital electron populations 1.23115 0.78450 1.03967 1.01596 1.86108 1.21258 1.26414 1.88109 1.19584 0.91486 0.84788 0.95766 1.21025 1.00110 0.91548 1.10655 1.21204 0.93545 0.97566 0.94130 1.19969 0.93254 0.94113 1.08348 1.18003 0.87103 0.83770 0.77890 1.90682 1.13719 1.86959 1.51164 1.46484 1.10218 1.07329 1.71021 1.18777 0.93720 0.76836 0.94399 0.93146 1.22077 0.98669 1.02306 0.97483 1.21249 0.97717 0.91989 1.46264 0.92056 1.24884 0.95403 0.98467 0.94927 1.69912 1.16455 1.18284 1.47365 0.86396 0.80964 0.81381 0.78367 1.19754 1.20856 1.20877 1.20140 0.97647 0.89887 0.92893 1.21014 0.88886 1.02935 1.04271 1.17611 0.86100 0.86323 1.09917 1.86115 1.70514 1.38081 1.28852 1.22998 0.99669 0.98510 0.85025 0.88217 0.92386 0.92503 0.84626 0.84678 0.77993 0.95502 0.89107 0.96573 0.92614 0.90138 0.92586 0.88008 0.93742 0.93488 0.89021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.67 10.27 -33.78 -0.35 -4.01 16 3 C 0.13 1.75 6.71 -38.93 -0.26 1.49 16 4 C -0.21 -2.59 9.01 -39.52 -0.36 -2.95 16 5 C -0.05 -0.63 9.51 -39.20 -0.37 -1.00 16 6 C -0.15 -2.58 5.87 -104.97 -0.62 -3.20 16 7 C 0.55 11.21 7.66 -12.44 -0.10 11.12 16 8 O -0.54 -12.75 13.00 5.29 0.07 -12.68 16 9 N -0.70 -14.74 5.02 -55.96 -0.28 -15.02 16 10 C 0.26 6.69 2.56 -69.08 -0.18 6.52 16 11 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 12 C -0.15 -3.63 9.26 37.16 0.34 -3.29 16 13 C -0.53 -14.04 8.73 -34.44 -0.30 -14.34 16 14 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 15 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 16 N -0.88 -24.72 11.32 55.43 0.63 -24.09 16 17 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 18 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 C 0.00 -0.07 5.92 -104.10 -0.62 -0.68 16 22 C -0.12 -1.83 8.56 36.00 0.31 -1.53 16 23 C 0.04 0.67 5.70 -39.19 -0.22 0.45 16 24 O -0.32 -4.55 9.33 -34.40 -0.32 -4.87 16 25 C 0.03 0.34 10.72 101.05 1.08 1.43 16 26 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.38 7.65 -51.93 -0.40 -0.01 16 28 H 0.06 0.36 7.65 -51.93 -0.40 -0.04 16 29 H 0.14 1.22 6.27 -52.49 -0.33 0.89 16 30 H 0.14 1.62 6.44 -52.49 -0.34 1.28 16 31 H 0.39 6.98 6.60 -40.82 -0.27 6.71 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 34 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 36 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 37 H 0.06 0.76 6.21 -51.93 -0.32 0.44 16 38 H 0.10 1.82 5.86 -51.93 -0.30 1.52 16 39 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.05 0.48 7.36 -51.93 -0.38 0.10 16 41 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 337.72 15.07 5.09 5.09 Total: -1.00 -31.50 337.72 -6.10 -37.60 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -5.53 Total: 5.66 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -0.39 Total: -3.13 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.35 Total: -39.11 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.60 Total: -21.57 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.50 -6.10 -37.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287113065.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.138 kcal (2) G-P(sol) polarization free energy of solvation -31.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds