Wall clock time and date at job start Tue Mar 31 2020 06:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35801 * 117.00188 * 2 1 4 4 C 1.38835 * 119.92420 * 359.97438 * 3 2 1 5 5 C 1.37795 * 120.14551 * 179.97438 * 4 3 2 6 6 C 1.39706 * 120.00368 * 0.02562 * 5 4 3 7 7 C 1.47601 * 120.06786 * 179.97438 * 6 5 4 8 8 O 1.21588 * 119.99951 * 173.74698 * 7 6 5 9 9 N 1.34773 * 120.00282 * 353.47862 * 7 6 5 10 10 C 1.46503 * 120.00098 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.46861 * 324.99140 * 10 9 7 12 12 C 1.52996 * 109.47379 * 84.99573 * 10 9 7 13 13 C 1.50698 * 109.47203 * 204.99714 * 10 9 7 14 14 H 1.08006 * 119.99609 * 359.97438 * 13 10 9 15 15 C 1.37879 * 120.00263 * 179.97438 * 13 10 9 16 16 N 1.31514 * 119.99814 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 119.99917 * 179.97438 * 15 13 10 18 18 H 1.48497 * 109.47359 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46541 * 120.00402 * 17 15 13 20 20 H 1.48495 * 109.47132 * 240.00080 * 17 15 13 21 21 C 1.39735 * 119.85641 * 0.22517 * 6 5 4 22 22 C 1.50696 * 120.07046 * 179.72467 * 21 6 5 23 23 C 1.38136 * 119.85068 * 359.47594 * 21 6 5 24 24 O 1.35999 * 120.00164 * 180.24549 * 23 21 6 25 25 C 1.42902 * 117.00421 * 270.32513 * 24 23 21 26 26 H 1.09002 * 109.47547 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47016 * 299.99905 * 1 2 3 28 28 H 1.08998 * 109.47157 * 60.00030 * 1 2 3 29 29 H 1.07995 * 119.92628 * 359.97438 * 4 3 2 30 30 H 1.08001 * 119.99528 * 179.97438 * 5 4 3 31 31 H 0.97000 * 120.00352 * 359.97438 * 9 7 6 32 32 H 1.09001 * 109.47478 * 59.99944 * 12 10 9 33 33 H 1.09002 * 109.47067 * 180.02562 * 12 10 9 34 34 H 1.09002 * 109.47140 * 299.99978 * 12 10 9 35 35 H 0.96997 * 119.99659 * 179.97438 * 16 15 13 36 36 H 1.09004 * 109.46935 * 83.40285 * 22 21 6 37 37 H 1.09003 * 109.47229 * 203.40168 * 22 21 6 38 38 H 1.08994 * 109.47421 * 323.40268 * 22 21 6 39 39 H 1.09002 * 109.46813 * 299.99414 * 25 24 23 40 40 H 1.08997 * 109.47180 * 59.99873 * 25 24 23 41 41 H 1.08995 * 109.47125 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 6 1.2879 2.3734 -0.0005 5 6 1.9088 3.6035 0.0000 6 6 3.3036 3.6821 0.0005 7 6 3.9701 4.9990 0.0005 8 8 5.1785 5.0688 0.1157 9 7 3.2399 6.1239 -0.1325 10 6 3.9016 7.4310 -0.1331 11 1 4.7520 7.4080 0.5483 12 6 4.3891 7.7553 -1.5466 13 6 2.9261 8.4880 0.3166 14 1 1.9143 8.2136 0.5765 15 6 3.3253 9.8054 0.3964 16 7 4.5572 10.1395 0.0795 17 14 2.1159 11.1156 0.9533 18 1 0.8043 10.4852 1.2488 19 1 2.6332 11.7784 2.1774 20 1 1.9491 12.1249 -0.1232 21 6 4.0663 2.5112 -0.0042 22 6 5.5711 2.5903 -0.0099 23 6 3.4377 1.2812 0.0015 24 8 4.1770 0.1397 0.0019 25 6 4.5311 -0.4045 -1.2711 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 0.2096 2.3141 -0.0014 30 1 1.3170 4.5070 -0.0008 31 1 2.2763 6.0681 -0.2287 32 1 3.5386 7.7783 -2.2280 33 1 4.8818 8.7276 -1.5469 34 1 5.0947 6.9908 -1.8719 35 1 4.8378 11.0663 0.1353 36 1 5.9317 2.7258 1.0098 37 1 5.9819 1.6682 -0.4211 38 1 5.8883 3.4342 -0.6225 39 1 3.6255 -0.6425 -1.8291 40 1 5.1195 0.3252 -1.8272 41 1 5.1180 -1.3118 -1.1278 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287113065.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:42 Heat of formation + Delta-G solvation = -105.349922 kcal Electronic energy + Delta-G solvation = -23678.251787 eV Core-core repulsion = 20137.382937 eV Total energy + Delta-G solvation = -3540.868849 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.87748 -40.50733 -39.26076 -37.74036 -36.73281 -34.45751 -33.11706 -31.86628 -30.43869 -28.60304 -28.24693 -27.32794 -27.00490 -24.68190 -23.12530 -22.16469 -21.26447 -19.57988 -18.82212 -18.18696 -17.95752 -17.23402 -17.05573 -16.83265 -16.15838 -16.09935 -15.81841 -15.78910 -15.00142 -14.73812 -14.55592 -14.30921 -14.14951 -13.86322 -13.66782 -13.27645 -13.14318 -12.98224 -12.86673 -12.81944 -12.67155 -12.62723 -12.27378 -12.10486 -11.98581 -11.92549 -11.10327 -11.08204 -10.64601 -10.44289 -9.87439 -9.70577 -9.23115 -8.16586 -6.34000 -0.19310 0.07433 1.45638 1.46670 1.58641 1.82556 2.18028 2.33692 2.48798 2.66831 2.90277 3.14354 3.69343 3.82000 3.89089 4.00511 4.24769 4.36953 4.42994 4.45326 4.47647 4.50437 4.68513 4.74799 4.76399 4.77269 4.79369 4.92975 4.95306 5.09125 5.10822 5.16985 5.38191 5.41681 5.52079 5.64007 5.70253 5.92068 6.08746 6.10580 6.55789 6.73392 6.95263 7.32745 7.52914 8.90104 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.023933 B = 0.003712 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.672042 B = 7540.843424 C = 8466.681545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.318 6.318 3 C 0.138 3.862 4 C -0.200 4.200 5 C -0.039 4.039 6 C -0.177 4.177 7 C 0.543 3.457 8 O -0.584 6.584 9 N -0.699 5.699 10 C 0.271 3.729 11 H 0.000 1.000 12 C -0.133 4.133 13 C -0.546 4.546 14 H 0.075 0.925 15 C 0.014 3.986 16 N -0.918 5.918 17 Si 0.973 3.027 18 H -0.258 1.258 19 H -0.285 1.285 20 H -0.279 1.279 21 C -0.019 4.019 22 C -0.108 4.108 23 C 0.035 3.965 24 O -0.335 6.335 25 C 0.027 3.973 26 H 0.122 0.878 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.176 0.824 30 H 0.155 0.845 31 H 0.403 0.597 32 H 0.040 0.960 33 H 0.067 0.933 34 H 0.012 0.988 35 H 0.265 0.735 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.050 0.950 40 H 0.046 0.954 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.696 -20.350 -3.010 23.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.231 6.231 3 C 0.091 3.909 4 C -0.219 4.219 5 C -0.058 4.058 6 C -0.180 4.180 7 C 0.332 3.668 8 O -0.467 6.467 9 N -0.348 5.348 10 C 0.168 3.832 11 H 0.018 0.982 12 C -0.192 4.192 13 C -0.584 4.584 14 H 0.093 0.907 15 C -0.186 4.186 16 N -0.556 5.556 17 Si 0.798 3.202 18 H -0.182 1.182 19 H -0.211 1.211 20 H -0.204 1.204 21 C -0.021 4.021 22 C -0.164 4.164 23 C -0.010 4.010 24 O -0.252 6.252 25 C -0.066 4.066 26 H 0.140 0.860 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.193 0.807 30 H 0.172 0.828 31 H 0.239 0.761 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.031 0.969 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.606 -20.420 -2.800 22.740 hybrid contribution -0.587 1.182 0.055 1.321 sum -10.193 -19.238 -2.745 21.944 Atomic orbital electron populations 1.23511 0.75795 1.06057 1.02922 1.86110 1.23937 1.25578 1.87467 1.19672 0.91102 0.85950 0.94218 1.21366 1.01895 0.90058 1.08555 1.21398 0.92092 0.99260 0.93009 1.19662 0.94691 0.91851 1.11846 1.18598 0.86739 0.84940 0.76534 1.90665 1.15629 1.87710 1.52680 1.46184 1.10963 1.06092 1.71558 1.18377 0.92540 0.78965 0.93332 0.98165 1.21898 0.98817 1.00808 0.97684 1.21573 0.98278 0.92352 1.46202 0.90695 1.25805 0.97074 1.00824 0.94872 1.70062 1.18446 1.18790 1.48304 0.85281 0.79035 0.78322 0.77593 1.18184 1.21104 1.20440 1.20146 0.97375 0.90578 0.94005 1.20848 0.89748 1.02714 1.03047 1.17671 0.87164 0.85972 1.10176 1.86077 1.70686 1.37686 1.30770 1.23210 1.00310 0.99256 0.83854 0.86013 0.91189 0.90880 0.80688 0.82794 0.76091 0.94061 0.91402 0.96925 0.92565 0.91450 0.90676 0.90575 0.93103 0.93548 0.86625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.81 113.37 1.11 1.22 16 2 O -0.32 -6.55 10.27 -77.30 -0.79 -7.34 16 3 C 0.14 3.33 6.71 22.69 0.15 3.49 16 4 C -0.20 -4.10 9.01 22.31 0.20 -3.90 16 5 C -0.04 -0.98 9.51 22.52 0.21 -0.77 16 6 C -0.18 -5.95 5.87 -20.09 -0.12 -6.07 16 7 C 0.54 23.05 7.66 86.72 0.66 23.72 16 8 O -0.58 -29.09 13.00 -3.99 -0.05 -29.15 16 9 N -0.70 -29.69 5.02 -449.21 -2.25 -31.95 16 10 C 0.27 14.18 2.56 44.24 0.11 14.29 16 11 H 0.00 0.03 7.58 -2.39 -0.02 0.01 16 12 C -0.13 -6.81 9.26 71.98 0.67 -6.14 16 13 C -0.55 -28.76 8.73 25.60 0.22 -28.54 16 14 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 15 C 0.01 0.76 5.30 84.66 0.45 1.21 16 16 N -0.92 -52.62 11.32 21.45 0.24 -52.38 16 17 Si 0.97 41.65 29.54 68.60 2.03 43.68 16 18 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 19 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 20 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 21 C -0.02 -0.63 5.92 -19.53 -0.12 -0.75 16 22 C -0.11 -3.60 8.56 71.23 0.61 -2.99 16 23 C 0.03 1.00 5.70 22.52 0.13 1.13 16 24 O -0.34 -9.18 9.33 -79.52 -0.74 -9.92 16 25 C 0.03 0.54 10.72 113.37 1.22 1.75 16 26 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.07 0.59 7.65 -2.39 -0.02 0.57 16 28 H 0.07 0.55 7.65 -2.39 -0.02 0.53 16 29 H 0.18 2.17 6.27 -2.91 -0.02 2.15 16 30 H 0.15 3.22 6.44 -2.91 -0.02 3.20 16 31 H 0.40 14.17 6.60 -92.71 -0.61 13.55 16 32 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.07 3.78 6.07 -2.39 -0.01 3.77 16 34 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 36 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 37 H 0.07 2.12 6.21 -2.39 -0.01 2.10 16 38 H 0.08 2.94 5.86 -2.39 -0.01 2.92 16 39 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.05 0.90 7.36 -2.39 -0.02 0.89 16 41 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -70.95 337.72 4.39 -66.56 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: 0.45 Total: 22.85 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: 5.52 Total: -2.36 kcal Atomic # 7 Polarization: -82.32 SS G_CDS: -2.01 Total: -84.33 kcal Atomic # 8 Polarization: -44.82 SS G_CDS: -1.59 Total: -46.41 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -70.95 4.39 -66.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287113065.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.787 kcal (2) G-P(sol) polarization free energy of solvation -70.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds