Wall clock time and date at job start Tue Mar 31 2020 07:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47192 * 2 1 4 4 C 1.52998 * 109.47282 * 120.00559 * 2 1 3 5 5 H 1.09002 * 109.47371 * 59.99530 * 4 2 1 6 6 O 1.42901 * 109.47028 * 300.00051 * 4 2 1 7 7 C 1.50693 * 109.47277 * 179.97438 * 4 2 1 8 8 O 1.21276 * 120.00022 * 114.99747 * 7 4 2 9 9 N 1.34779 * 120.00121 * 294.99868 * 7 4 2 10 10 C 1.46503 * 120.00188 * 180.02562 * 9 7 4 11 11 C 1.50692 * 109.47179 * 179.97438 * 10 9 7 12 12 C 1.38304 * 119.93244 * 269.72767 * 11 10 9 13 13 C 1.38102 * 120.06759 * 179.72418 * 12 11 10 14 14 C 1.38875 * 119.92971 * 0.57089 * 13 12 11 15 15 O 1.35752 * 120.06581 * 179.68061 * 14 13 12 16 16 C 1.34832 * 117.00182 * 174.48383 * 15 14 13 17 17 H 1.08008 * 119.99608 * 5.05562 * 16 15 14 18 18 C 1.38648 * 120.00393 * 185.05814 * 16 15 14 19 19 N 1.31551 * 120.00052 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 120.00133 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46908 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47092 * 120.00009 * 20 18 16 23 23 H 1.48496 * 109.46937 * 240.00133 * 20 18 16 24 24 C 1.38871 * 119.86440 * 359.70031 * 14 13 12 25 25 C 1.38097 * 119.93329 * 0.02562 * 24 14 13 26 26 H 1.09001 * 109.47366 * 299.99845 * 1 2 3 27 27 H 1.09000 * 109.47519 * 59.99354 * 1 2 3 28 28 H 1.08998 * 109.47549 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46663 * 240.00317 * 2 1 3 30 30 H 1.09003 * 109.46942 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47617 * 299.99950 * 3 2 1 32 32 H 1.09004 * 109.47058 * 60.00559 * 3 2 1 33 33 H 0.96698 * 113.99448 * 299.99838 * 6 4 2 34 34 H 0.96997 * 119.99932 * 359.97438 * 9 7 4 35 35 H 1.09000 * 109.46624 * 300.00068 * 10 9 7 36 36 H 1.09004 * 109.46839 * 60.00214 * 10 9 7 37 37 H 1.07999 * 119.96507 * 359.97438 * 12 11 10 38 38 H 1.08002 * 120.03046 * 180.27068 * 13 12 11 39 39 H 0.97000 * 119.99982 * 180.02562 * 19 18 16 40 40 H 1.08003 * 120.03618 * 179.97438 * 24 14 13 41 41 H 1.07994 * 119.96916 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2491 5 1 1.6766 -1.7490 1.2491 6 8 1.5636 -0.0478 2.4160 7 6 3.5469 -0.7219 1.2488 8 8 4.1537 -0.1196 2.1090 9 7 4.2204 -1.3917 0.2926 10 6 5.6854 -1.3927 0.2926 11 6 6.1872 -2.2083 -0.8709 12 6 6.4217 -3.5623 -0.7145 13 6 6.8761 -4.3135 -1.7805 14 6 7.1089 -3.7057 -3.0073 15 8 7.5618 -4.4403 -4.0552 16 6 7.6578 -3.8143 -5.2455 17 1 7.4586 -2.7551 -5.3162 18 6 8.0123 -4.5301 -6.3787 19 7 8.2544 -5.8203 -6.2928 20 14 8.1460 -3.6626 -8.0277 21 1 7.8254 -2.2227 -7.8569 22 1 9.5287 -3.8038 -8.5506 23 1 7.1896 -4.2718 -8.9865 24 6 6.8779 -2.3448 -3.1597 25 6 6.4180 -1.6001 -2.0915 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8932 -0.5138 -0.8901 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8901 33 1 1.8490 0.8737 2.4821 34 1 3.7351 -1.8737 -0.3951 35 1 6.0494 -0.3692 0.2032 36 1 6.0484 -1.8275 1.2240 37 1 6.2454 -4.0334 0.2412 38 1 7.0548 -5.3717 -1.6588 39 1 8.5027 -6.3211 -7.0855 40 1 7.0584 -1.8692 -4.1124 41 1 6.2386 -0.5417 -2.2092 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291450804.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:08 Heat of formation + Delta-G solvation = -107.163664 kcal Electronic energy + Delta-G solvation = -22847.452659 eV Core-core repulsion = 19306.505160 eV Total energy + Delta-G solvation = -3540.947499 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.37308 -39.17721 -37.53729 -36.75771 -34.73488 -33.89320 -32.41067 -30.37909 -30.19540 -27.68529 -27.54387 -25.75111 -24.50033 -22.10499 -21.43068 -20.70820 -20.18846 -18.20367 -18.05602 -17.05963 -16.64952 -16.52726 -15.35812 -15.19705 -14.72427 -14.68766 -14.50329 -13.98024 -13.77927 -13.70306 -13.39006 -13.26763 -12.84019 -12.73991 -12.62818 -12.42449 -12.17103 -11.85429 -11.71830 -11.50209 -11.43284 -11.26097 -11.03126 -10.83931 -10.75329 -10.71469 -10.51039 -9.60974 -9.46888 -9.05619 -8.94922 -8.33694 -7.37300 -6.56869 -4.15874 2.01103 2.08069 2.49839 3.03977 3.06677 3.12384 3.26310 3.86904 4.03284 4.36734 4.41398 4.49169 4.62776 4.83526 4.97868 5.11076 5.16720 5.19781 5.23437 5.34463 5.36551 5.51743 5.56040 5.60984 5.71908 5.74910 5.84551 5.92006 5.96987 6.07549 6.29872 6.41423 6.55139 6.75412 6.90988 7.09206 7.21154 7.22594 7.30782 7.51534 7.66850 7.87790 8.12943 8.88536 9.56338 10.60661 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.022519 B = 0.002956 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.073449 B = 9468.961519 C =10122.294056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.124 4.124 3 C -0.156 4.156 4 C 0.095 3.905 5 H 0.123 0.877 6 O -0.537 6.537 7 C 0.483 3.517 8 O -0.542 6.542 9 N -0.717 5.717 10 C 0.178 3.822 11 C -0.216 4.216 12 C -0.054 4.054 13 C -0.195 4.195 14 C 0.161 3.839 15 O -0.173 6.173 16 C -0.394 4.394 17 H 0.094 0.906 18 C 0.040 3.960 19 N -0.859 5.859 20 Si 0.942 3.058 21 H -0.266 1.266 22 H -0.275 1.275 23 H -0.275 1.275 24 C -0.237 4.237 25 C -0.051 4.051 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.086 0.914 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.380 0.620 34 H 0.402 0.598 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.112 0.888 38 H 0.119 0.881 39 H 0.271 0.729 40 H 0.128 0.872 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.072 10.355 9.214 18.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.143 4.143 3 C -0.213 4.213 4 C 0.032 3.968 5 H 0.140 0.860 6 O -0.342 6.342 7 C 0.268 3.732 8 O -0.420 6.420 9 N -0.370 5.370 10 C 0.056 3.944 11 C -0.217 4.217 12 C -0.073 4.073 13 C -0.214 4.214 14 C 0.106 3.894 15 O -0.075 6.075 16 C -0.470 4.470 17 H 0.111 0.889 18 C -0.165 4.165 19 N -0.493 5.493 20 Si 0.767 3.233 21 H -0.190 1.190 22 H -0.200 1.200 23 H -0.200 1.200 24 C -0.256 4.256 25 C -0.069 4.069 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.104 0.896 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.230 0.770 34 H 0.237 0.763 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.130 0.870 38 H 0.137 0.863 39 H 0.081 0.919 40 H 0.146 0.854 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.749 9.790 9.771 18.148 hybrid contribution 0.259 0.654 -1.426 1.590 sum -11.490 10.444 8.345 17.628 Atomic orbital electron populations 1.21753 0.93589 1.02322 1.02288 1.21772 0.97603 0.97390 0.97568 1.21887 1.01475 0.95474 1.02455 1.21947 0.89524 0.98657 0.86683 0.85972 1.86563 1.74911 1.30074 1.42669 1.21565 0.91047 0.79088 0.81506 1.90701 1.70060 1.43951 1.37266 1.46408 1.08018 1.52623 1.29963 1.19994 0.78498 0.99242 0.96675 1.19195 1.12945 0.94477 0.95123 1.20537 0.96796 0.92804 0.97178 1.20222 1.09435 1.00041 0.91730 1.19435 0.90580 0.90345 0.89033 1.83980 1.70384 1.37551 1.15626 1.21409 1.48916 0.94371 0.82283 0.88854 1.25324 0.96305 0.95668 0.99161 1.70041 1.42290 1.06580 1.30357 0.85628 0.78432 0.79079 0.80193 1.19028 1.20035 1.20034 1.21157 1.09955 0.94271 1.00233 1.20629 0.96120 0.98263 0.91925 0.91822 0.92342 0.92355 0.89577 0.92263 0.91680 0.92296 0.77030 0.76330 0.91604 0.91522 0.86953 0.86344 0.91884 0.85405 0.87451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.05 37.16 0.34 -0.64 16 2 C -0.12 -0.96 2.77 -90.63 -0.25 -1.21 16 3 C -0.16 -1.23 8.64 37.15 0.32 -0.91 16 4 C 0.09 0.90 3.19 -27.89 -0.09 0.81 16 5 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 6 O -0.54 -5.66 12.28 -55.08 -0.68 -6.34 16 7 C 0.48 5.91 5.90 -10.99 -0.06 5.85 16 8 O -0.54 -8.65 16.33 -14.29 -0.23 -8.88 16 9 N -0.72 -8.33 5.51 -61.48 -0.34 -8.67 16 10 C 0.18 2.39 5.80 -5.20 -0.03 2.36 16 11 C -0.22 -3.33 5.25 -104.58 -0.55 -3.88 16 12 C -0.05 -0.89 9.69 -39.61 -0.38 -1.27 16 13 C -0.19 -3.84 9.99 -39.40 -0.39 -4.23 16 14 C 0.16 3.66 6.65 -39.11 -0.26 3.40 16 15 O -0.17 -4.73 9.76 0.04 0.00 -4.72 16 16 C -0.39 -10.55 9.49 30.88 0.29 -10.26 16 17 H 0.09 2.31 5.20 -52.48 -0.27 2.03 16 18 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -24.38 13.67 55.48 0.76 -23.62 16 20 Si 0.94 19.74 29.55 -169.99 -5.02 14.71 16 21 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 22 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 23 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 24 C -0.24 -4.78 9.17 -39.40 -0.36 -5.14 16 25 C -0.05 -0.84 9.69 -39.61 -0.38 -1.23 16 26 H 0.06 0.46 7.68 -51.93 -0.40 0.06 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.09 0.63 7.93 -51.93 -0.41 0.22 16 30 H 0.06 0.57 7.22 -51.93 -0.37 0.19 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.42 6.78 -51.93 -0.35 0.07 16 33 H 0.38 3.38 7.08 45.56 0.32 3.70 16 34 H 0.40 4.06 8.25 -40.82 -0.34 3.73 16 35 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 36 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 37 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 38 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 39 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.13 2.61 5.64 -52.48 -0.30 2.31 16 41 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 346.18 15.07 5.22 5.22 Total: -1.00 -31.24 346.18 -7.26 -38.50 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -5.05 Total: 9.20 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: -1.91 Total: -15.39 kcal Atomic # 7 Polarization: -32.71 SS G_CDS: 0.42 Total: -32.29 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.91 Total: -19.95 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.24 -7.26 -38.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291450804.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.663 kcal (2) G-P(sol) polarization free energy of solvation -31.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds