Wall clock time and date at job start Tue Mar 31 2020 07:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47192 * 2 1 4 4 C 1.52998 * 109.47282 * 120.00559 * 2 1 3 5 5 H 1.09002 * 109.47371 * 59.99530 * 4 2 1 6 6 O 1.42901 * 109.47028 * 300.00051 * 4 2 1 7 7 C 1.50693 * 109.47277 * 179.97438 * 4 2 1 8 8 O 1.21276 * 120.00022 * 114.99747 * 7 4 2 9 9 N 1.34779 * 120.00121 * 294.99868 * 7 4 2 10 10 C 1.46503 * 120.00188 * 180.02562 * 9 7 4 11 11 C 1.50692 * 109.47179 * 179.97438 * 10 9 7 12 12 C 1.38304 * 119.93244 * 269.72767 * 11 10 9 13 13 C 1.38102 * 120.06759 * 179.72418 * 12 11 10 14 14 C 1.38875 * 119.92971 * 0.57089 * 13 12 11 15 15 O 1.35752 * 120.06581 * 179.68061 * 14 13 12 16 16 C 1.34832 * 117.00182 * 174.48383 * 15 14 13 17 17 H 1.08008 * 119.99608 * 5.05562 * 16 15 14 18 18 C 1.38648 * 120.00393 * 185.05814 * 16 15 14 19 19 N 1.31551 * 120.00052 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 120.00133 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46908 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47092 * 120.00009 * 20 18 16 23 23 H 1.48496 * 109.46937 * 240.00133 * 20 18 16 24 24 C 1.38871 * 119.86440 * 359.70031 * 14 13 12 25 25 C 1.38097 * 119.93329 * 0.02562 * 24 14 13 26 26 H 1.09001 * 109.47366 * 299.99845 * 1 2 3 27 27 H 1.09000 * 109.47519 * 59.99354 * 1 2 3 28 28 H 1.08998 * 109.47549 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46663 * 240.00317 * 2 1 3 30 30 H 1.09003 * 109.46942 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47617 * 299.99950 * 3 2 1 32 32 H 1.09004 * 109.47058 * 60.00559 * 3 2 1 33 33 H 0.96698 * 113.99448 * 299.99838 * 6 4 2 34 34 H 0.96997 * 119.99932 * 359.97438 * 9 7 4 35 35 H 1.09000 * 109.46624 * 300.00068 * 10 9 7 36 36 H 1.09004 * 109.46839 * 60.00214 * 10 9 7 37 37 H 1.07999 * 119.96507 * 359.97438 * 12 11 10 38 38 H 1.08002 * 120.03046 * 180.27068 * 13 12 11 39 39 H 0.97000 * 119.99982 * 180.02562 * 19 18 16 40 40 H 1.08003 * 120.03618 * 179.97438 * 24 14 13 41 41 H 1.07994 * 119.96916 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2491 5 1 1.6766 -1.7490 1.2491 6 8 1.5636 -0.0478 2.4160 7 6 3.5469 -0.7219 1.2488 8 8 4.1537 -0.1196 2.1090 9 7 4.2204 -1.3917 0.2926 10 6 5.6854 -1.3927 0.2926 11 6 6.1872 -2.2083 -0.8709 12 6 6.4217 -3.5623 -0.7145 13 6 6.8761 -4.3135 -1.7805 14 6 7.1089 -3.7057 -3.0073 15 8 7.5618 -4.4403 -4.0552 16 6 7.6578 -3.8143 -5.2455 17 1 7.4586 -2.7551 -5.3162 18 6 8.0123 -4.5301 -6.3787 19 7 8.2544 -5.8203 -6.2928 20 14 8.1460 -3.6626 -8.0277 21 1 7.8254 -2.2227 -7.8569 22 1 9.5287 -3.8038 -8.5506 23 1 7.1896 -4.2718 -8.9865 24 6 6.8779 -2.3448 -3.1597 25 6 6.4180 -1.6001 -2.0915 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8932 -0.5138 -0.8901 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8901 33 1 1.8490 0.8737 2.4821 34 1 3.7351 -1.8737 -0.3951 35 1 6.0494 -0.3692 0.2032 36 1 6.0484 -1.8275 1.2240 37 1 6.2454 -4.0334 0.2412 38 1 7.0548 -5.3717 -1.6588 39 1 8.5027 -6.3211 -7.0855 40 1 7.0584 -1.8692 -4.1124 41 1 6.2386 -0.5417 -2.2092 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291450804.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:07 Heat of formation + Delta-G solvation = -128.734766 kcal Electronic energy + Delta-G solvation = -22848.388052 eV Core-core repulsion = 19306.505160 eV Total energy + Delta-G solvation = -3541.882892 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.35544 -40.75341 -38.73581 -38.01521 -35.82877 -34.71296 -34.25583 -31.86640 -31.56957 -28.70025 -28.11811 -27.47921 -25.82131 -23.65651 -22.35526 -22.10486 -20.98297 -19.89064 -19.16382 -18.71902 -17.47429 -17.41065 -16.61199 -16.39064 -16.19397 -15.88942 -15.75907 -15.53146 -15.23446 -14.87912 -14.51101 -14.38579 -14.10295 -13.94668 -13.65002 -13.30942 -13.27541 -13.04981 -13.00168 -12.63182 -12.58786 -12.36495 -12.25393 -12.12887 -12.09227 -11.83267 -11.47612 -11.20633 -10.85016 -10.53394 -10.10997 -9.82069 -9.01407 -8.48864 -6.17147 0.53229 0.56786 1.36151 1.43263 1.53946 1.54241 2.16458 2.22157 2.84143 3.16144 3.30618 3.47775 3.69971 3.74225 3.87994 3.92064 4.01597 4.16459 4.19433 4.43124 4.54762 4.55830 4.59429 4.73231 4.79456 4.80124 4.92100 5.00376 5.03141 5.13835 5.16798 5.25582 5.31678 5.38654 5.44191 5.51740 5.68497 5.73686 6.01087 6.14834 6.41841 6.63864 6.96194 7.17549 7.75351 8.74195 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.022519 B = 0.002956 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.073449 B = 9468.961519 C =10122.294056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.118 4.118 3 C -0.156 4.156 4 C 0.100 3.900 5 H 0.139 0.861 6 O -0.548 6.548 7 C 0.485 3.515 8 O -0.580 6.580 9 N -0.710 5.710 10 C 0.183 3.817 11 C -0.182 4.182 12 C -0.044 4.044 13 C -0.205 4.205 14 C 0.123 3.877 15 O -0.229 6.229 16 C -0.413 4.413 17 H 0.104 0.896 18 C -0.022 4.022 19 N -0.919 5.919 20 Si 1.018 2.982 21 H -0.250 1.250 22 H -0.270 1.270 23 H -0.269 1.269 24 C -0.243 4.243 25 C -0.044 4.044 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.093 0.907 30 H 0.041 0.959 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.386 0.614 34 H 0.412 0.588 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.146 0.854 38 H 0.115 0.885 39 H 0.273 0.727 40 H 0.120 0.880 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.806 12.493 10.211 21.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.137 4.137 3 C -0.213 4.213 4 C 0.037 3.963 5 H 0.156 0.844 6 O -0.354 6.354 7 C 0.272 3.728 8 O -0.460 6.460 9 N -0.363 5.363 10 C 0.060 3.940 11 C -0.183 4.183 12 C -0.063 4.063 13 C -0.224 4.224 14 C 0.072 3.928 15 O -0.135 6.135 16 C -0.489 4.489 17 H 0.122 0.878 18 C -0.219 4.219 19 N -0.557 5.557 20 Si 0.837 3.163 21 H -0.173 1.173 22 H -0.195 1.195 23 H -0.194 1.194 24 C -0.262 4.262 25 C -0.063 4.063 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.112 0.888 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.236 0.764 34 H 0.249 0.751 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.164 0.836 38 H 0.133 0.867 39 H 0.082 0.918 40 H 0.138 0.862 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -13.518 11.959 10.807 21.037 hybrid contribution 0.669 0.140 -1.350 1.513 sum -12.849 12.099 9.458 20.023 Atomic orbital electron populations 1.21734 0.92726 1.02748 1.02502 1.21753 0.98187 0.97015 0.96780 1.21891 1.00273 0.95905 1.03224 1.22061 0.87299 0.99733 0.87209 0.84412 1.86548 1.74879 1.30680 1.43329 1.22053 0.92139 0.77986 0.80573 1.90691 1.71034 1.45531 1.38739 1.46220 1.07191 1.52618 1.30257 1.19885 0.79634 0.98993 0.95469 1.19476 1.09511 0.94156 0.95196 1.20879 0.94964 0.93043 0.97392 1.20449 1.09731 1.00459 0.91745 1.19986 0.92049 0.91607 0.89132 1.83951 1.73694 1.39228 1.16676 1.21877 1.49103 0.95052 0.82866 0.87832 1.26576 0.95804 0.96408 1.03143 1.70182 1.45351 1.08600 1.31569 0.84538 0.78532 0.78505 0.74715 1.17306 1.19547 1.19360 1.21241 1.10273 0.93530 1.01176 1.20928 0.94668 0.99594 0.91103 0.92200 0.91564 0.91857 0.88835 0.93998 0.90803 0.91769 0.76380 0.75138 0.91131 0.91147 0.83597 0.86733 0.91797 0.86178 0.84268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.05 71.98 0.65 -0.86 16 2 C -0.12 -1.47 2.77 -10.80 -0.03 -1.50 16 3 C -0.16 -2.07 8.64 71.98 0.62 -1.45 16 4 C 0.10 1.59 3.19 29.85 0.10 1.69 16 5 H 0.14 1.79 8.14 -2.39 -0.02 1.77 16 6 O -0.55 -10.31 12.28 -130.00 -1.60 -11.91 16 7 C 0.49 10.50 5.90 87.65 0.52 11.02 16 8 O -0.58 -17.20 16.33 15.96 0.26 -16.94 16 9 N -0.71 -13.93 5.51 -466.80 -2.57 -16.51 16 10 C 0.18 4.21 5.80 85.63 0.50 4.71 16 11 C -0.18 -5.00 5.25 -19.83 -0.10 -5.11 16 12 C -0.04 -1.33 9.69 22.25 0.22 -1.12 16 13 C -0.20 -8.04 9.99 22.39 0.22 -7.81 16 14 C 0.12 5.75 6.65 22.57 0.15 5.90 16 15 O -0.23 -13.25 9.76 -22.78 -0.22 -13.47 16 16 C -0.41 -23.11 9.49 67.92 0.64 -22.47 16 17 H 0.10 5.28 5.20 -2.91 -0.02 5.26 16 18 C -0.02 -1.18 5.49 84.83 0.47 -0.72 16 19 N -0.92 -55.02 13.67 21.61 0.30 -54.72 16 20 Si 1.02 41.35 29.55 68.60 2.03 43.38 16 21 H -0.25 -9.29 7.11 99.48 0.71 -8.59 16 22 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 23 H -0.27 -10.48 7.11 99.48 0.71 -9.78 16 24 C -0.24 -9.71 9.17 22.39 0.21 -9.50 16 25 C -0.04 -1.36 9.69 22.25 0.22 -1.14 16 26 H 0.06 0.70 7.68 -2.39 -0.02 0.69 16 27 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.09 1.04 7.93 -2.38 -0.02 1.02 16 30 H 0.04 0.71 7.22 -2.39 -0.02 0.69 16 31 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 0.77 6.78 -2.38 -0.02 0.76 16 33 H 0.39 6.15 7.08 -74.06 -0.52 5.62 16 34 H 0.41 6.70 8.25 -92.71 -0.76 5.93 16 35 H 0.07 1.65 8.08 -2.39 -0.02 1.63 16 36 H 0.07 1.66 8.08 -2.38 -0.02 1.64 16 37 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 38 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 39 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 40 H 0.12 4.93 5.64 -2.91 -0.02 4.92 16 41 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -71.67 346.18 2.33 -69.34 By element: Atomic # 1 Polarization: 29.41 SS G_CDS: -0.23 Total: 29.18 kcal Atomic # 6 Polarization: -32.72 SS G_CDS: 4.37 Total: -28.36 kcal Atomic # 7 Polarization: -68.95 SS G_CDS: -2.28 Total: -71.23 kcal Atomic # 8 Polarization: -40.76 SS G_CDS: -1.56 Total: -42.32 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Total: -71.67 2.33 -69.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291450804.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.399 kcal (2) G-P(sol) polarization free energy of solvation -71.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds