Wall clock time and date at job start Tue Mar 31 2020 06:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35989 * 116.99937 * 2 1 4 4 C 1.38565 * 120.07208 * 359.72070 * 3 2 1 5 5 C 1.38253 * 119.99535 * 179.70281 * 4 3 2 6 6 C 1.38243 * 120.14666 * 0.59742 * 5 4 3 7 7 C 1.50702 * 119.92886 * 179.69968 * 6 5 4 8 8 H 1.08991 * 109.47359 * 144.97727 * 7 6 5 9 9 C 1.53000 * 109.47415 * 264.98482 * 7 6 5 10 10 N 1.46509 * 109.46683 * 24.97946 * 7 6 5 11 11 C 1.34773 * 119.99720 * 154.99867 * 10 7 6 12 12 O 1.21686 * 120.00006 * 0.02562 * 11 10 7 13 13 C 1.46377 * 119.99873 * 180.02562 * 11 10 7 14 14 H 1.07998 * 119.99718 * 353.93498 * 13 11 10 15 15 C 1.40051 * 119.99926 * 173.94538 * 13 11 10 16 16 N 1.30669 * 120.00168 * 6.14324 * 15 13 11 17 17 Si 1.86800 * 119.99625 * 186.14978 * 15 13 11 18 18 H 1.48500 * 109.47203 * 94.98059 * 17 15 13 19 19 H 1.48503 * 109.47030 * 214.97597 * 17 15 13 20 20 H 1.48492 * 109.47279 * 334.97854 * 17 15 13 21 21 C 1.38242 * 120.14782 * 359.68110 * 6 5 4 22 22 C 1.50704 * 120.00081 * 180.02562 * 21 6 5 23 23 C 1.38559 * 119.99779 * 0.02562 * 21 6 5 24 24 O 1.35998 * 120.07159 * 179.97438 * 23 21 6 25 25 C 1.42909 * 116.99525 * 270.02052 * 24 23 21 26 26 H 1.09004 * 109.47493 * 300.00507 * 1 2 3 27 27 H 1.09004 * 109.47136 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47281 * 60.00347 * 1 2 3 29 29 H 1.07998 * 120.00668 * 359.97438 * 4 3 2 30 30 H 1.08005 * 119.92280 * 180.29659 * 5 4 3 31 31 H 1.09007 * 109.46521 * 299.99755 * 9 7 6 32 32 H 1.08991 * 109.47474 * 59.99314 * 9 7 6 33 33 H 1.09003 * 109.47006 * 180.02562 * 9 7 6 34 34 H 0.96997 * 119.99695 * 335.00127 * 10 7 6 35 35 H 0.97000 * 120.00021 * 180.02562 * 16 15 13 36 36 H 1.09001 * 109.46404 * 270.01988 * 22 21 6 37 37 H 1.08998 * 109.47558 * 30.01504 * 22 21 6 38 38 H 1.09000 * 109.47254 * 150.02342 * 22 21 6 39 39 H 1.08997 * 109.47136 * 299.99610 * 25 24 23 40 40 H 1.08996 * 109.47353 * 60.00205 * 25 24 23 41 41 H 1.08999 * 109.46494 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3747 -0.0058 5 6 1.9224 3.6057 0.0004 6 6 3.3028 3.6798 0.0000 7 6 3.9836 5.0243 -0.0001 8 1 4.8987 4.9682 0.5893 9 6 4.3261 5.4226 -1.4371 10 7 3.0873 6.0255 0.5836 11 6 3.5967 7.1372 1.1502 12 8 4.8010 7.3096 1.1765 13 6 2.7012 8.1372 1.7339 14 1 1.6318 8.0336 1.6248 15 6 3.2314 9.2285 2.4336 16 7 4.5236 9.4200 2.4636 17 14 2.0910 10.4101 3.3240 18 1 1.9740 10.0065 4.7483 19 1 2.6432 11.7863 3.2434 20 1 0.7495 10.3770 2.6883 21 6 4.0602 2.5233 0.0000 22 6 5.5649 2.6080 0.0001 23 6 3.4359 1.2864 -0.0001 24 8 4.1795 0.1477 -0.0006 25 6 4.5342 -0.3949 -1.2743 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5137 -0.8900 29 1 0.2146 2.3197 -0.0108 30 1 1.3341 4.5115 0.0007 31 1 4.9930 4.6776 -1.8714 32 1 3.4111 5.4786 -2.0265 33 1 4.8190 6.3948 -1.4370 34 1 2.1274 5.8881 0.5623 35 1 4.8908 10.1756 2.9486 36 1 5.9276 2.6288 -1.0276 37 1 5.8777 3.5168 0.5142 38 1 5.9776 1.7396 0.5136 39 1 3.6289 -0.6361 -1.8313 40 1 5.1192 0.3372 -1.8309 41 1 5.1254 -1.2994 -1.1318 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292668194.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:16 Heat of formation + Delta-G solvation = -88.467530 kcal Electronic energy + Delta-G solvation = -23774.923221 eV Core-core repulsion = 20234.786448 eV Total energy + Delta-G solvation = -3540.136774 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.65519 -38.47944 -38.00917 -36.64860 -33.88656 -32.46253 -32.23297 -30.04933 -29.03140 -27.38499 -27.30485 -26.07547 -26.00421 -23.24395 -21.69790 -20.57210 -19.32421 -18.13726 -17.37822 -16.75002 -16.69887 -16.06574 -15.39700 -15.19641 -14.85094 -14.68130 -14.36199 -13.81155 -13.65315 -13.44033 -13.31350 -13.00214 -12.63246 -12.34984 -12.22755 -11.99314 -11.89743 -11.86526 -11.59718 -11.45238 -11.11875 -11.00010 -10.83867 -10.67500 -10.45423 -10.38433 -10.19325 -9.85802 -8.84936 -8.54984 -7.96744 -7.59980 -7.52362 -6.19000 -4.63156 1.22851 1.42726 3.14241 3.16134 3.21514 3.24649 3.48192 3.94777 4.11510 4.59204 4.76044 4.77975 4.94170 4.99864 5.04034 5.14488 5.21826 5.28054 5.29028 5.32827 5.41747 5.52162 5.65543 5.69960 5.76607 5.87253 5.94415 6.09565 6.13354 6.23125 6.33947 6.40589 6.49306 6.67946 6.79321 6.90261 7.10389 7.44067 7.66199 7.92420 8.10667 8.33598 9.03232 9.52833 10.60218 10.78819 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.022451 B = 0.003829 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.872210 B = 7310.219580 C = 8154.992648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.311 6.311 3 C 0.103 3.897 4 C -0.200 4.200 5 C -0.073 4.073 6 C -0.097 4.097 7 C 0.191 3.809 8 H 0.090 0.910 9 C -0.151 4.151 10 N -0.762 5.762 11 C 0.557 3.443 12 O -0.579 6.579 13 C -0.547 4.547 14 H 0.067 0.933 15 C 0.089 3.911 16 N -0.767 5.767 17 Si 0.906 3.094 18 H -0.273 1.273 19 H -0.279 1.279 20 H -0.265 1.265 21 C -0.057 4.057 22 C -0.119 4.119 23 C 0.059 3.941 24 O -0.323 6.323 25 C 0.036 3.964 26 H 0.055 0.945 27 H 0.097 0.903 28 H 0.053 0.947 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.067 0.933 34 H 0.378 0.622 35 H 0.268 0.732 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.043 0.957 40 H 0.044 0.956 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.973 -17.130 -7.477 19.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.224 6.224 3 C 0.057 3.943 4 C -0.219 4.219 5 C -0.091 4.091 6 C -0.098 4.098 7 C 0.085 3.915 8 H 0.108 0.892 9 C -0.210 4.210 10 N -0.419 5.419 11 C 0.361 3.639 12 O -0.462 6.462 13 C -0.584 4.584 14 H 0.085 0.915 15 C -0.131 4.131 16 N -0.396 5.396 17 Si 0.731 3.269 18 H -0.198 1.198 19 H -0.205 1.205 20 H -0.189 1.189 21 C -0.058 4.058 22 C -0.175 4.175 23 C 0.015 3.985 24 O -0.239 6.239 25 C -0.059 4.059 26 H 0.074 0.926 27 H 0.115 0.885 28 H 0.072 0.928 29 H 0.148 0.852 30 H 0.149 0.851 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.211 0.789 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.762 -17.173 -7.241 19.236 hybrid contribution -1.549 0.680 0.214 1.705 sum -6.311 -16.493 -7.027 19.006 Atomic orbital electron populations 1.23048 0.78840 1.03650 1.01380 1.86123 1.20906 1.26484 1.88885 1.19316 0.91450 0.84699 0.98798 1.21082 0.99846 0.91760 1.09166 1.20829 0.94161 0.97065 0.97092 1.19960 0.93460 0.95052 1.01330 1.19381 0.94213 0.83570 0.94340 0.89225 1.22135 1.00828 1.01937 0.96112 1.46356 1.07867 1.22527 1.65104 1.18200 0.88583 0.79941 0.77177 1.90591 1.15948 1.77940 1.61732 1.20876 0.93335 1.07467 1.36698 0.91495 1.25683 0.94996 0.97360 0.95051 1.70021 1.11949 1.25454 1.32144 0.86386 0.80927 0.79539 0.80056 1.19822 1.20471 1.18931 1.19774 0.96860 0.90639 0.98506 1.20835 0.90234 1.03919 1.02512 1.17663 0.86109 0.86126 1.08598 1.86065 1.70368 1.38725 1.28761 1.22941 0.99531 0.98355 0.85024 0.92592 0.88465 0.92796 0.85165 0.85107 0.93171 0.93283 0.91419 0.78850 0.92140 0.91056 0.90003 0.90873 0.93825 0.93754 0.89208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -4.04 10.28 -34.21 -0.35 -4.39 16 3 C 0.10 1.47 6.70 -39.12 -0.26 1.21 16 4 C -0.20 -2.65 9.04 -39.46 -0.36 -3.01 16 5 C -0.07 -1.08 9.23 -39.57 -0.37 -1.45 16 6 C -0.10 -1.59 5.06 -104.62 -0.53 -2.12 16 7 C 0.19 3.68 2.28 -69.08 -0.16 3.52 16 8 H 0.09 1.93 5.59 -51.93 -0.29 1.64 16 9 C -0.15 -2.66 9.47 37.16 0.35 -2.31 16 10 N -0.76 -16.86 4.99 -56.34 -0.28 -17.14 16 11 C 0.56 15.62 7.71 -12.99 -0.10 15.52 16 12 O -0.58 -18.39 14.71 5.20 0.08 -18.31 16 13 C -0.55 -15.34 9.53 -35.63 -0.34 -15.68 16 14 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 15 C 0.09 2.47 5.49 -17.37 -0.10 2.37 16 16 N -0.77 -22.89 11.85 55.55 0.66 -22.23 16 17 Si 0.91 20.08 29.56 -169.99 -5.03 15.06 16 18 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 19 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 20 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 21 C -0.06 -0.88 5.89 -104.50 -0.62 -1.49 16 22 C -0.12 -1.64 9.15 36.01 0.33 -1.31 16 23 C 0.06 0.90 5.71 -39.12 -0.22 0.68 16 24 O -0.32 -4.64 9.25 -34.24 -0.32 -4.96 16 25 C 0.04 0.38 11.13 101.05 1.13 1.50 16 26 H 0.06 0.44 7.68 -51.93 -0.40 0.05 16 27 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.40 7.65 -51.93 -0.40 0.00 16 29 H 0.13 1.36 6.30 -52.49 -0.33 1.03 16 30 H 0.13 1.82 6.06 -52.48 -0.32 1.50 16 31 H 0.05 0.75 7.91 -51.92 -0.41 0.34 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 34 H 0.38 7.38 6.18 -40.82 -0.25 7.13 16 35 H 0.27 7.25 8.29 -40.82 -0.34 6.92 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 1.23 6.02 -51.93 -0.31 0.92 16 38 H 0.07 0.95 7.53 -51.93 -0.39 0.56 16 39 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 342.22 15.07 5.16 5.16 Total: -1.00 -35.03 342.22 -5.94 -40.96 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -5.61 Total: 7.19 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -0.25 Total: -1.34 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.38 Total: -39.36 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -0.59 Total: -27.66 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.03 Total: 15.06 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.03 -5.94 -40.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292668194.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.506 kcal (2) G-P(sol) polarization free energy of solvation -35.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds