Wall clock time and date at job start Tue Mar 31 2020 06:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35989 * 116.99937 * 2 1 4 4 C 1.38565 * 120.07208 * 359.72070 * 3 2 1 5 5 C 1.38253 * 119.99535 * 179.70281 * 4 3 2 6 6 C 1.38243 * 120.14666 * 0.59742 * 5 4 3 7 7 C 1.50702 * 119.92886 * 179.69968 * 6 5 4 8 8 H 1.08991 * 109.47359 * 144.97727 * 7 6 5 9 9 C 1.53000 * 109.47415 * 264.98482 * 7 6 5 10 10 N 1.46509 * 109.46683 * 24.97946 * 7 6 5 11 11 C 1.34773 * 119.99720 * 154.99867 * 10 7 6 12 12 O 1.21686 * 120.00006 * 0.02562 * 11 10 7 13 13 C 1.46377 * 119.99873 * 180.02562 * 11 10 7 14 14 H 1.07998 * 119.99718 * 353.93498 * 13 11 10 15 15 C 1.40051 * 119.99926 * 173.94538 * 13 11 10 16 16 N 1.30669 * 120.00168 * 6.14324 * 15 13 11 17 17 Si 1.86800 * 119.99625 * 186.14978 * 15 13 11 18 18 H 1.48500 * 109.47203 * 94.98059 * 17 15 13 19 19 H 1.48503 * 109.47030 * 214.97597 * 17 15 13 20 20 H 1.48492 * 109.47279 * 334.97854 * 17 15 13 21 21 C 1.38242 * 120.14782 * 359.68110 * 6 5 4 22 22 C 1.50704 * 120.00081 * 180.02562 * 21 6 5 23 23 C 1.38559 * 119.99779 * 0.02562 * 21 6 5 24 24 O 1.35998 * 120.07159 * 179.97438 * 23 21 6 25 25 C 1.42909 * 116.99525 * 270.02052 * 24 23 21 26 26 H 1.09004 * 109.47493 * 300.00507 * 1 2 3 27 27 H 1.09004 * 109.47136 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47281 * 60.00347 * 1 2 3 29 29 H 1.07998 * 120.00668 * 359.97438 * 4 3 2 30 30 H 1.08005 * 119.92280 * 180.29659 * 5 4 3 31 31 H 1.09007 * 109.46521 * 299.99755 * 9 7 6 32 32 H 1.08991 * 109.47474 * 59.99314 * 9 7 6 33 33 H 1.09003 * 109.47006 * 180.02562 * 9 7 6 34 34 H 0.96997 * 119.99695 * 335.00127 * 10 7 6 35 35 H 0.97000 * 120.00021 * 180.02562 * 16 15 13 36 36 H 1.09001 * 109.46404 * 270.01988 * 22 21 6 37 37 H 1.08998 * 109.47558 * 30.01504 * 22 21 6 38 38 H 1.09000 * 109.47254 * 150.02342 * 22 21 6 39 39 H 1.08997 * 109.47136 * 299.99610 * 25 24 23 40 40 H 1.08996 * 109.47353 * 60.00205 * 25 24 23 41 41 H 1.08999 * 109.46494 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3747 -0.0058 5 6 1.9224 3.6057 0.0004 6 6 3.3028 3.6798 0.0000 7 6 3.9836 5.0243 -0.0001 8 1 4.8987 4.9682 0.5893 9 6 4.3261 5.4226 -1.4371 10 7 3.0873 6.0255 0.5836 11 6 3.5967 7.1372 1.1502 12 8 4.8010 7.3096 1.1765 13 6 2.7012 8.1372 1.7339 14 1 1.6318 8.0336 1.6248 15 6 3.2314 9.2285 2.4336 16 7 4.5236 9.4200 2.4636 17 14 2.0910 10.4101 3.3240 18 1 1.9740 10.0065 4.7483 19 1 2.6432 11.7863 3.2434 20 1 0.7495 10.3770 2.6883 21 6 4.0602 2.5233 0.0000 22 6 5.5649 2.6080 0.0001 23 6 3.4359 1.2864 -0.0001 24 8 4.1795 0.1477 -0.0006 25 6 4.5342 -0.3949 -1.2743 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5137 -0.8900 29 1 0.2146 2.3197 -0.0108 30 1 1.3341 4.5115 0.0007 31 1 4.9930 4.6776 -1.8714 32 1 3.4111 5.4786 -2.0265 33 1 4.8190 6.3948 -1.4370 34 1 2.1274 5.8881 0.5623 35 1 4.8908 10.1756 2.9486 36 1 5.9276 2.6288 -1.0276 37 1 5.8777 3.5168 0.5142 38 1 5.9776 1.7396 0.5136 39 1 3.6289 -0.6361 -1.8313 40 1 5.1192 0.3372 -1.8309 41 1 5.1254 -1.2994 -1.1318 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292668194.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:15 Heat of formation + Delta-G solvation = -112.629803 kcal Electronic energy + Delta-G solvation = -23775.970976 eV Core-core repulsion = 20234.786448 eV Total energy + Delta-G solvation = -3541.184528 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.75114 -39.88529 -39.17050 -38.24086 -35.53745 -34.48310 -33.54119 -31.55577 -30.28124 -28.42343 -28.19163 -28.10973 -26.96855 -24.60563 -23.04766 -21.90890 -21.04046 -19.52418 -18.83644 -17.98375 -17.86775 -17.40306 -16.99959 -16.34149 -16.05269 -16.00740 -15.69569 -15.18142 -15.04665 -14.77902 -14.53141 -14.42339 -14.13274 -13.89394 -13.40997 -13.26213 -13.10358 -13.06467 -12.86237 -12.72531 -12.65233 -12.60753 -12.54687 -12.01584 -11.88801 -11.82194 -11.72743 -10.91695 -10.91126 -9.82718 -9.66755 -9.48268 -9.04685 -8.27711 -6.82646 0.12653 0.28092 1.41139 1.42314 1.57865 2.25558 2.27011 2.42086 2.50403 2.85251 3.14797 3.63058 3.70828 3.79441 3.99009 4.12158 4.20889 4.37956 4.41119 4.44094 4.49739 4.50693 4.51560 4.58317 4.66348 4.72440 4.75014 4.78298 4.84270 5.00864 5.08427 5.20423 5.23225 5.34067 5.34755 5.53533 5.61953 5.90945 6.15983 6.25962 6.32466 6.64847 6.89313 7.56747 8.52158 8.69903 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.022451 B = 0.003829 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.872210 B = 7310.219580 C = 8154.992648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.324 6.324 3 C 0.102 3.898 4 C -0.191 4.191 5 C -0.079 4.079 6 C -0.114 4.114 7 C 0.194 3.806 8 H 0.058 0.942 9 C -0.142 4.142 10 N -0.750 5.750 11 C 0.542 3.458 12 O -0.628 6.628 13 C -0.575 4.575 14 H 0.087 0.913 15 C 0.030 3.970 16 N -0.821 5.821 17 Si 0.996 3.004 18 H -0.265 1.265 19 H -0.273 1.273 20 H -0.247 1.247 21 C -0.065 4.065 22 C -0.115 4.115 23 C 0.049 3.951 24 O -0.339 6.339 25 C 0.031 3.969 26 H 0.063 0.937 27 H 0.120 0.880 28 H 0.068 0.932 29 H 0.162 0.838 30 H 0.138 0.862 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.031 0.969 34 H 0.392 0.608 35 H 0.274 0.726 36 H 0.089 0.911 37 H 0.061 0.939 38 H 0.078 0.922 39 H 0.045 0.955 40 H 0.051 0.949 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.648 -18.320 -7.787 21.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.238 6.238 3 C 0.056 3.944 4 C -0.209 4.209 5 C -0.097 4.097 6 C -0.115 4.115 7 C 0.088 3.912 8 H 0.076 0.924 9 C -0.200 4.200 10 N -0.405 5.405 11 C 0.346 3.654 12 O -0.515 6.515 13 C -0.612 4.612 14 H 0.105 0.895 15 C -0.185 4.185 16 N -0.451 5.451 17 Si 0.815 3.185 18 H -0.190 1.190 19 H -0.198 1.198 20 H -0.171 1.171 21 C -0.066 4.066 22 C -0.171 4.171 23 C 0.005 3.995 24 O -0.256 6.256 25 C -0.063 4.063 26 H 0.081 0.919 27 H 0.138 0.862 28 H 0.087 0.913 29 H 0.179 0.821 30 H 0.156 0.844 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.050 0.950 34 H 0.228 0.772 35 H 0.084 0.916 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.482 -18.419 -7.586 21.279 hybrid contribution -0.740 0.855 0.254 1.159 sum -8.222 -17.565 -7.331 20.733 Atomic orbital electron populations 1.23397 0.76430 1.05669 1.02409 1.86115 1.23390 1.25795 1.88515 1.19450 0.91412 0.85603 0.97895 1.21321 1.01326 0.90579 1.07717 1.20932 0.93455 0.98179 0.97124 1.19671 0.94274 0.93484 1.04064 1.19353 0.92821 0.84631 0.94348 0.92382 1.22019 1.01745 1.00689 0.95574 1.46028 1.08984 1.21625 1.63913 1.18552 0.88103 0.81421 0.77338 1.90547 1.17885 1.79396 1.63689 1.21427 0.94384 1.08153 1.37217 0.89507 1.26933 0.96788 0.99305 0.95455 1.70188 1.14738 1.26695 1.33431 0.85034 0.78656 0.76330 0.78433 1.18985 1.19809 1.17056 1.19853 0.97358 0.90671 0.98706 1.20807 0.89793 1.03068 1.03459 1.17787 0.86890 0.86169 1.08677 1.86023 1.70423 1.38357 1.30833 1.23159 1.00059 0.99284 0.83764 0.91884 0.86159 0.91317 0.82056 0.84434 0.90504 0.91740 0.94978 0.77220 0.91641 0.89235 0.92057 0.90268 0.93594 0.93068 0.86934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.32 -7.62 10.28 -79.55 -0.82 -8.44 16 3 C 0.10 2.73 6.70 22.57 0.15 2.88 16 4 C -0.19 -4.59 9.04 22.35 0.20 -4.38 16 5 C -0.08 -2.22 9.23 22.27 0.21 -2.01 16 6 C -0.11 -3.72 5.06 -19.86 -0.10 -3.82 16 7 C 0.19 7.70 2.28 44.24 0.10 7.80 16 8 H 0.06 2.68 5.59 -2.39 -0.01 2.67 16 9 C -0.14 -5.09 9.47 71.98 0.68 -4.41 16 10 N -0.75 -33.94 4.99 -450.39 -2.25 -36.18 16 11 C 0.54 31.48 7.71 86.36 0.67 32.15 16 12 O -0.63 -42.02 14.71 -4.30 -0.06 -42.09 16 13 C -0.58 -32.64 9.53 24.83 0.24 -32.41 16 14 H 0.09 4.40 7.85 -2.91 -0.02 4.38 16 15 C 0.03 1.69 5.49 85.31 0.47 2.16 16 16 N -0.82 -50.49 11.85 21.84 0.26 -50.23 16 17 Si 1.00 41.04 29.56 68.60 2.03 43.07 16 18 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 19 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 20 H -0.25 -9.39 7.11 99.48 0.71 -8.68 16 21 C -0.06 -1.98 5.89 -19.79 -0.12 -2.10 16 22 C -0.12 -3.20 9.15 71.24 0.65 -2.55 16 23 C 0.05 1.43 5.71 22.57 0.13 1.56 16 24 O -0.34 -9.32 9.25 -79.66 -0.74 -10.06 16 25 C 0.03 0.60 11.13 113.37 1.26 1.86 16 26 H 0.06 0.79 7.68 -2.38 -0.02 0.77 16 27 H 0.12 1.08 8.14 -2.38 -0.02 1.06 16 28 H 0.07 0.75 7.65 -2.39 -0.02 0.73 16 29 H 0.16 2.77 6.30 -2.91 -0.02 2.75 16 30 H 0.14 3.59 6.06 -2.91 -0.02 3.58 16 31 H 0.08 2.30 7.91 -2.38 -0.02 2.28 16 32 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.39 15.26 6.18 -92.71 -0.57 14.69 16 35 H 0.27 15.25 8.29 -92.71 -0.77 14.48 16 36 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.06 1.96 6.02 -2.39 -0.01 1.94 16 38 H 0.08 2.06 7.53 -2.39 -0.02 2.04 16 39 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -78.99 342.22 4.56 -74.44 By element: Atomic # 1 Polarization: 30.97 SS G_CDS: 0.48 Total: 31.46 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: 5.65 Total: -1.96 kcal Atomic # 7 Polarization: -84.43 SS G_CDS: -1.99 Total: -86.42 kcal Atomic # 8 Polarization: -58.97 SS G_CDS: -1.62 Total: -60.59 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Total: -78.99 4.56 -74.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292668194.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.191 kcal (2) G-P(sol) polarization free energy of solvation -78.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds