Wall clock time and date at job start Tue Mar 31 2020 07:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.46777 * 2 1 4 4 C 1.53004 * 109.46968 * 180.02562 * 3 2 1 5 5 H 1.08995 * 109.47503 * 54.99573 * 4 3 2 6 6 O 1.42901 * 109.46593 * 294.99856 * 4 3 2 7 7 C 1.42903 * 114.00086 * 150.00299 * 6 4 3 8 8 C 1.50701 * 109.47476 * 175.00171 * 4 3 2 9 9 O 1.21281 * 120.00517 * 114.99190 * 8 4 3 10 10 N 1.34779 * 119.99498 * 294.99945 * 8 4 3 11 11 C 1.39926 * 119.99754 * 174.65914 * 10 8 4 12 12 C 1.38964 * 120.03233 * 146.60528 * 11 10 8 13 13 C 1.38162 * 120.06301 * 179.97438 * 12 11 10 14 14 C 1.38170 * 120.13981 * 359.75224 * 13 12 11 15 15 C 1.38914 * 120.06678 * 0.50150 * 14 13 12 16 16 O 1.35752 * 120.02821 * 179.76707 * 15 14 13 17 17 C 1.34828 * 117.00167 * 353.90660 * 16 15 14 18 18 H 1.08004 * 120.00172 * 354.60329 * 17 16 15 19 19 C 1.38651 * 119.99955 * 174.60271 * 17 16 15 20 20 N 1.31560 * 120.00141 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00092 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47338 * 90.00192 * 21 19 17 23 23 H 1.48497 * 109.47208 * 210.00286 * 21 19 17 24 24 H 1.48508 * 109.47184 * 330.00077 * 21 19 17 25 25 C 1.38704 * 120.03558 * 326.58436 * 11 10 8 26 26 H 1.09005 * 109.47222 * 60.00074 * 1 2 3 27 27 H 1.09009 * 109.46787 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47377 * 299.99791 * 1 2 3 29 29 H 1.09003 * 109.47042 * 239.99954 * 2 1 3 30 30 H 1.09000 * 109.46568 * 120.00219 * 2 1 3 31 31 H 1.08998 * 109.47721 * 59.99825 * 3 2 1 32 32 H 1.09002 * 109.47235 * 299.99417 * 3 2 1 33 33 H 1.09004 * 109.46755 * 299.99971 * 7 6 4 34 34 H 1.08996 * 109.47175 * 59.99593 * 7 6 4 35 35 H 1.08999 * 109.47606 * 180.02562 * 7 6 4 36 36 H 0.96996 * 120.00217 * 354.65159 * 10 8 4 37 37 H 1.07994 * 119.96819 * 359.96045 * 12 11 10 38 38 H 1.08002 * 119.92828 * 179.97438 * 13 12 11 39 39 H 1.07996 * 119.96382 * 180.25199 * 14 13 12 40 40 H 0.97004 * 120.00041 * 179.97438 * 20 19 17 41 41 H 1.08003 * 120.07145 * 0.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8532 -0.8426 6 8 4.0467 0.8730 1.2202 7 6 5.3064 0.2091 1.0989 8 6 4.0723 2.8579 -0.1244 9 8 4.6932 3.3630 0.7868 10 7 3.8314 3.5626 -1.2478 11 6 4.1988 4.9108 -1.3203 12 6 4.6152 5.4542 -2.5296 13 6 4.9776 6.7854 -2.6020 14 6 4.9225 7.5818 -1.4742 15 6 4.5122 7.0431 -0.2613 16 8 4.4629 7.8251 0.8473 17 6 4.9438 9.0795 0.7335 18 1 5.4235 9.3930 -0.1820 19 6 4.8226 9.9672 1.7917 20 7 4.2379 9.5855 2.9067 21 14 5.4896 11.7049 1.6343 22 1 4.4312 12.5941 1.0916 23 1 5.9116 12.1961 2.9706 24 1 6.6563 11.7060 0.7154 25 6 4.1474 5.7064 -0.1852 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 5.2210 -0.6030 0.3769 34 1 6.0602 0.9194 0.7594 35 1 5.5985 -0.1959 2.0678 36 1 3.4034 3.1351 -2.0060 37 1 4.6557 4.8352 -3.4136 38 1 5.3013 7.2054 -3.5429 39 1 5.2026 8.6230 -1.5349 40 1 4.1534 10.2064 3.6472 41 1 3.8243 5.2864 0.7559 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294526061.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:56 Heat of formation + Delta-G solvation = -88.774095 kcal Electronic energy + Delta-G solvation = -23172.946808 eV Core-core repulsion = 19632.796741 eV Total energy + Delta-G solvation = -3540.150067 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.42821 -38.87482 -37.70239 -36.32578 -35.07592 -33.97864 -32.22808 -30.54320 -29.34696 -28.25697 -26.50072 -25.35557 -24.73943 -22.28017 -21.49156 -21.30199 -20.11022 -18.30445 -17.60879 -17.12708 -16.77451 -15.85959 -15.28180 -15.06686 -14.98457 -14.82327 -14.60199 -14.17912 -13.89555 -13.58360 -13.48095 -13.44061 -12.82302 -12.57293 -12.48191 -12.22653 -11.74472 -11.61823 -11.58002 -11.37258 -11.22646 -11.13154 -11.00592 -10.84821 -10.75071 -10.49709 -10.43091 -9.76306 -9.46169 -9.05432 -8.79463 -7.67228 -7.17502 -6.40115 -3.99283 1.98093 2.35172 2.83843 3.08121 3.16211 3.16830 3.21730 3.63830 4.00345 4.46162 4.57747 4.61993 4.73402 4.85136 4.96517 5.15325 5.16111 5.25887 5.35403 5.38285 5.40319 5.56704 5.60251 5.62592 5.65654 5.82852 5.87674 5.98066 6.09203 6.11512 6.22884 6.38189 6.67913 6.80156 6.95381 7.04510 7.09589 7.35353 7.48809 7.69305 7.80612 8.04477 8.35265 9.04632 9.76040 10.77793 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.019876 B = 0.003383 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.416704 B = 8275.741092 C = 8658.861768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.115 4.115 4 C 0.078 3.922 5 H 0.085 0.915 6 O -0.354 6.354 7 C 0.029 3.971 8 C 0.480 3.520 9 O -0.492 6.492 10 N -0.669 5.669 11 C 0.177 3.823 12 C -0.237 4.237 13 C -0.058 4.058 14 C -0.245 4.245 15 C 0.168 3.832 16 O -0.173 6.173 17 C -0.391 4.391 18 H 0.092 0.908 19 C 0.039 3.961 20 N -0.860 5.860 21 Si 0.942 3.058 22 H -0.273 1.273 23 H -0.277 1.277 24 H -0.267 1.267 25 C -0.188 4.188 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.041 0.959 34 H 0.046 0.954 35 H 0.090 0.910 36 H 0.404 0.596 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.128 0.872 40 H 0.270 0.730 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.417 -17.787 -10.166 20.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.153 4.153 4 C 0.016 3.984 5 H 0.103 0.897 6 O -0.271 6.271 7 C -0.068 4.068 8 C 0.265 3.735 9 O -0.364 6.364 10 N -0.316 5.316 11 C 0.084 3.916 12 C -0.258 4.258 13 C -0.077 4.077 14 C -0.265 4.265 15 C 0.113 3.887 16 O -0.076 6.076 17 C -0.468 4.468 18 H 0.110 0.890 19 C -0.166 4.166 20 N -0.495 5.495 21 Si 0.766 3.234 22 H -0.199 1.199 23 H -0.203 1.203 24 H -0.192 1.192 25 C -0.209 4.209 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.108 0.892 36 H 0.239 0.761 37 H 0.126 0.874 38 H 0.130 0.870 39 H 0.146 0.854 40 H 0.080 0.920 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.210 -17.408 -8.778 19.759 hybrid contribution 0.400 0.709 -0.796 1.138 sum -2.811 -16.699 -9.574 19.453 Atomic orbital electron populations 1.21775 0.95525 1.01647 1.02115 1.21478 0.96028 0.95743 1.02509 1.21718 0.90727 0.98693 1.04113 1.22076 0.96199 0.90718 0.89363 0.89701 1.88013 1.36664 1.72127 1.30264 1.22871 0.85590 0.95613 1.02723 1.21539 0.80396 0.88967 0.82600 1.90813 1.37151 1.70348 1.38086 1.43477 1.61080 1.09888 1.17179 1.17173 0.98280 0.81848 0.94290 1.20252 1.12838 0.96626 0.96121 1.20506 0.97073 0.92868 0.97249 1.21180 1.11328 1.01225 0.92771 1.19125 0.92121 0.90467 0.86977 1.84006 1.70609 1.23944 1.29067 1.21338 1.37040 0.85867 1.02509 0.89031 1.25309 0.96899 0.99736 0.94633 1.70057 1.39916 1.35892 1.03605 0.85707 0.79050 0.80497 0.78128 1.19885 1.20260 1.19181 1.20018 1.10667 0.91347 0.98911 0.92686 0.92704 0.92444 0.92131 0.90995 0.89954 0.89973 0.94077 0.93530 0.89179 0.76094 0.87415 0.87047 0.85442 0.92012 0.85373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.12 -0.94 5.83 -26.73 -0.16 -1.09 16 3 C -0.11 -1.11 4.89 -26.73 -0.13 -1.24 16 4 C 0.08 0.90 2.52 -27.88 -0.07 0.83 16 5 H 0.09 0.70 7.79 -51.93 -0.40 0.30 16 6 O -0.35 -4.72 9.42 -55.09 -0.52 -5.23 16 7 C 0.03 0.30 10.81 101.05 1.09 1.39 16 8 C 0.48 7.63 6.87 -10.98 -0.08 7.55 16 9 O -0.49 -10.57 14.20 -14.30 -0.20 -10.77 16 10 N -0.67 -9.70 5.22 -9.88 -0.05 -9.75 16 11 C 0.18 3.35 6.27 -83.72 -0.53 2.83 16 12 C -0.24 -4.09 9.96 -39.34 -0.39 -4.48 16 13 C -0.06 -1.07 10.03 -39.63 -0.40 -1.47 16 14 C -0.25 -5.48 9.13 -39.36 -0.36 -5.84 16 15 C 0.17 4.31 6.64 -39.13 -0.26 4.05 16 16 O -0.17 -5.21 9.76 0.05 0.00 -5.21 16 17 C -0.39 -11.29 9.44 30.88 0.29 -11.00 16 18 H 0.09 2.43 5.30 -52.48 -0.28 2.15 16 19 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 20 N -0.86 -26.04 13.67 55.48 0.76 -25.28 16 21 Si 0.94 20.98 29.55 -169.99 -5.02 15.95 16 22 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 23 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 25 C -0.19 -4.43 8.60 -39.21 -0.34 -4.77 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.62 7.82 -51.93 -0.41 0.22 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.08 0.66 7.93 -51.93 -0.41 0.24 16 33 H 0.04 0.31 8.09 -51.93 -0.42 -0.11 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.40 4.00 8.71 -40.82 -0.36 3.65 16 37 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 38 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 39 H 0.13 2.82 5.71 -52.49 -0.30 2.52 16 40 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.13 3.26 6.42 -52.48 -0.34 2.92 16 LS Contribution 348.74 15.07 5.26 5.26 Total: -1.00 -35.54 348.74 -6.68 -42.23 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -5.85 Total: 5.77 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: -1.05 Total: -12.97 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: 0.71 Total: -35.03 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.72 Total: -21.21 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.54 -6.68 -42.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294526061.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.548 kcal (2) G-P(sol) polarization free energy of solvation -35.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds