Wall clock time and date at job start Tue Mar 31 2020 07:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.46777 * 2 1 4 4 C 1.53004 * 109.46968 * 180.02562 * 3 2 1 5 5 H 1.08995 * 109.47503 * 54.99573 * 4 3 2 6 6 O 1.42901 * 109.46593 * 294.99856 * 4 3 2 7 7 C 1.42903 * 114.00086 * 150.00299 * 6 4 3 8 8 C 1.50701 * 109.47476 * 175.00171 * 4 3 2 9 9 O 1.21281 * 120.00517 * 114.99190 * 8 4 3 10 10 N 1.34779 * 119.99498 * 294.99945 * 8 4 3 11 11 C 1.39926 * 119.99754 * 174.65914 * 10 8 4 12 12 C 1.38964 * 120.03233 * 146.60528 * 11 10 8 13 13 C 1.38162 * 120.06301 * 179.97438 * 12 11 10 14 14 C 1.38170 * 120.13981 * 359.75224 * 13 12 11 15 15 C 1.38914 * 120.06678 * 0.50150 * 14 13 12 16 16 O 1.35752 * 120.02821 * 179.76707 * 15 14 13 17 17 C 1.34828 * 117.00167 * 353.90660 * 16 15 14 18 18 H 1.08004 * 120.00172 * 354.60329 * 17 16 15 19 19 C 1.38651 * 119.99955 * 174.60271 * 17 16 15 20 20 N 1.31560 * 120.00141 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00092 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47338 * 90.00192 * 21 19 17 23 23 H 1.48497 * 109.47208 * 210.00286 * 21 19 17 24 24 H 1.48508 * 109.47184 * 330.00077 * 21 19 17 25 25 C 1.38704 * 120.03558 * 326.58436 * 11 10 8 26 26 H 1.09005 * 109.47222 * 60.00074 * 1 2 3 27 27 H 1.09009 * 109.46787 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47377 * 299.99791 * 1 2 3 29 29 H 1.09003 * 109.47042 * 239.99954 * 2 1 3 30 30 H 1.09000 * 109.46568 * 120.00219 * 2 1 3 31 31 H 1.08998 * 109.47721 * 59.99825 * 3 2 1 32 32 H 1.09002 * 109.47235 * 299.99417 * 3 2 1 33 33 H 1.09004 * 109.46755 * 299.99971 * 7 6 4 34 34 H 1.08996 * 109.47175 * 59.99593 * 7 6 4 35 35 H 1.08999 * 109.47606 * 180.02562 * 7 6 4 36 36 H 0.96996 * 120.00217 * 354.65159 * 10 8 4 37 37 H 1.07994 * 119.96819 * 359.96045 * 12 11 10 38 38 H 1.08002 * 119.92828 * 179.97438 * 13 12 11 39 39 H 1.07996 * 119.96382 * 180.25199 * 14 13 12 40 40 H 0.97004 * 120.00041 * 179.97438 * 20 19 17 41 41 H 1.08003 * 120.07145 * 0.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8532 -0.8426 6 8 4.0467 0.8730 1.2202 7 6 5.3064 0.2091 1.0989 8 6 4.0723 2.8579 -0.1244 9 8 4.6932 3.3630 0.7868 10 7 3.8314 3.5626 -1.2478 11 6 4.1988 4.9108 -1.3203 12 6 4.6152 5.4542 -2.5296 13 6 4.9776 6.7854 -2.6020 14 6 4.9225 7.5818 -1.4742 15 6 4.5122 7.0431 -0.2613 16 8 4.4629 7.8251 0.8473 17 6 4.9438 9.0795 0.7335 18 1 5.4235 9.3930 -0.1820 19 6 4.8226 9.9672 1.7917 20 7 4.2379 9.5855 2.9067 21 14 5.4896 11.7049 1.6343 22 1 4.4312 12.5941 1.0916 23 1 5.9116 12.1961 2.9706 24 1 6.6563 11.7060 0.7154 25 6 4.1474 5.7064 -0.1852 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 5.2210 -0.6030 0.3769 34 1 6.0602 0.9194 0.7594 35 1 5.5985 -0.1959 2.0678 36 1 3.4034 3.1351 -2.0060 37 1 4.6557 4.8352 -3.4136 38 1 5.3013 7.2054 -3.5429 39 1 5.2026 8.6230 -1.5349 40 1 4.1534 10.2064 3.6472 41 1 3.8243 5.2864 0.7559 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294526061.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:55 Heat of formation + Delta-G solvation = -114.041691 kcal Electronic energy + Delta-G solvation = -23174.042494 eV Core-core repulsion = 19632.796741 eV Total energy + Delta-G solvation = -3541.245752 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.77453 -40.53345 -38.99555 -37.93737 -35.98558 -35.30945 -34.27683 -31.67772 -30.93012 -29.69087 -27.40989 -27.28881 -25.80165 -23.78945 -23.03647 -22.13932 -21.45550 -20.03414 -19.22330 -18.47484 -17.99936 -17.07023 -16.81493 -16.64602 -16.22151 -16.04657 -15.77917 -15.65360 -15.48394 -15.37628 -14.57739 -14.37534 -14.22345 -14.16486 -13.60022 -13.33250 -13.25416 -13.04310 -12.91793 -12.70362 -12.41330 -12.34645 -12.13941 -12.06556 -11.98587 -11.63556 -11.49224 -11.39194 -11.19258 -10.78325 -10.34901 -9.35843 -8.89374 -8.48163 -6.18124 0.37527 0.68419 1.33233 1.42600 1.51723 1.53513 1.89487 2.17869 2.73885 2.81990 3.15505 3.34330 3.65623 3.81435 3.87465 4.11523 4.20623 4.27405 4.35534 4.40473 4.42629 4.50429 4.66256 4.68337 4.71648 4.73849 4.81512 4.91950 5.01194 5.03597 5.09499 5.26105 5.36645 5.37596 5.42923 5.49821 5.61501 5.72475 5.97354 6.01455 6.19173 6.45999 6.95241 7.13778 7.77953 8.75842 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.019876 B = 0.003383 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.416704 B = 8275.741092 C = 8658.861768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.113 4.113 4 C 0.086 3.914 5 H 0.133 0.867 6 O -0.382 6.382 7 C 0.023 3.977 8 C 0.474 3.526 9 O -0.558 6.558 10 N -0.650 5.650 11 C 0.185 3.815 12 C -0.203 4.203 13 C -0.048 4.048 14 C -0.255 4.255 15 C 0.126 3.874 16 O -0.237 6.237 17 C -0.414 4.414 18 H 0.106 0.894 19 C -0.028 4.028 20 N -0.925 5.925 21 Si 1.025 2.975 22 H -0.259 1.259 23 H -0.273 1.273 24 H -0.250 1.250 25 C -0.216 4.216 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.041 0.959 29 H 0.087 0.913 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.104 0.896 33 H 0.078 0.922 34 H 0.026 0.974 35 H 0.095 0.905 36 H 0.432 0.568 37 H 0.168 0.832 38 H 0.162 0.838 39 H 0.124 0.876 40 H 0.272 0.728 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.071 -19.592 -14.953 24.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.151 4.151 3 C -0.151 4.151 4 C 0.025 3.975 5 H 0.150 0.850 6 O -0.299 6.299 7 C -0.072 4.072 8 C 0.263 3.737 9 O -0.434 6.434 10 N -0.299 5.299 11 C 0.090 3.910 12 C -0.223 4.223 13 C -0.066 4.066 14 C -0.275 4.275 15 C 0.075 3.925 16 O -0.144 6.144 17 C -0.490 4.490 18 H 0.123 0.877 19 C -0.225 4.225 20 N -0.563 5.563 21 Si 0.843 3.157 22 H -0.184 1.184 23 H -0.198 1.198 24 H -0.174 1.174 25 C -0.238 4.238 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.061 0.939 29 H 0.106 0.894 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.122 0.878 33 H 0.097 0.903 34 H 0.045 0.955 35 H 0.114 0.886 36 H 0.273 0.727 37 H 0.185 0.815 38 H 0.179 0.821 39 H 0.141 0.859 40 H 0.081 0.919 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.892 -19.295 -13.659 23.817 hybrid contribution 0.267 0.943 0.468 1.086 sum -2.624 -18.352 -13.192 22.753 Atomic orbital electron populations 1.21786 0.95197 1.02326 1.01860 1.21440 0.96232 0.94136 1.03249 1.21783 0.89406 1.00221 1.03681 1.22298 0.96985 0.87789 0.90432 0.84951 1.87998 1.37730 1.72332 1.31877 1.23038 0.84040 0.95912 1.04249 1.22635 0.78877 0.90670 0.81563 1.90804 1.40161 1.72073 1.40317 1.43379 1.60444 1.07996 1.18107 1.17342 0.96849 0.83354 0.93447 1.20915 1.08076 0.96596 0.96762 1.21073 0.95050 0.92953 0.97510 1.21337 1.11472 1.01777 0.92921 1.19674 0.94087 0.91031 0.87662 1.83966 1.73463 1.25066 1.31873 1.21904 1.37661 0.86012 1.03433 0.87667 1.26741 0.97035 1.04862 0.93828 1.70230 1.43019 1.38027 1.05014 0.84514 0.78948 0.73673 0.78556 1.18382 1.19754 1.17356 1.20035 1.12702 0.91561 0.99516 0.91774 0.91567 0.93939 0.89421 0.92163 0.93146 0.87767 0.90320 0.95488 0.88639 0.72740 0.81481 0.82065 0.85874 0.91861 0.89095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.91 71.98 0.71 -1.18 16 2 C -0.11 -1.45 5.83 30.59 0.18 -1.27 16 3 C -0.11 -1.98 4.89 30.59 0.15 -1.83 16 4 C 0.09 1.80 2.52 29.85 0.08 1.87 16 5 H 0.13 1.53 7.79 -2.39 -0.02 1.51 16 6 O -0.38 -9.97 9.42 -129.99 -1.22 -11.20 16 7 C 0.02 0.46 10.81 113.37 1.23 1.69 16 8 C 0.47 14.86 6.87 87.66 0.60 15.46 16 9 O -0.56 -25.26 14.20 15.96 0.23 -25.03 16 10 N -0.65 -17.16 5.22 -303.56 -1.59 -18.74 16 11 C 0.18 6.68 6.27 38.13 0.24 6.92 16 12 C -0.20 -5.95 9.96 22.43 0.22 -5.73 16 13 C -0.05 -1.55 10.03 22.24 0.22 -1.33 16 14 C -0.26 -11.39 9.13 22.42 0.20 -11.19 16 15 C 0.13 6.88 6.64 22.56 0.15 7.03 16 16 O -0.24 -15.52 9.76 -22.75 -0.22 -15.74 16 17 C -0.41 -25.42 9.44 67.92 0.64 -24.78 16 18 H 0.11 5.83 5.30 -2.91 -0.02 5.81 16 19 C -0.03 -1.66 5.49 84.83 0.47 -1.19 16 20 N -0.92 -60.05 13.67 21.61 0.30 -59.76 16 21 Si 1.02 44.49 29.55 68.60 2.03 46.52 16 22 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 23 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 24 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 25 C -0.22 -10.75 8.60 22.51 0.19 -10.56 16 26 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 27 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 28 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.93 7.82 -2.39 -0.02 0.91 16 31 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.10 1.32 7.93 -2.39 -0.02 1.30 16 33 H 0.08 0.93 8.09 -2.38 -0.02 0.91 16 34 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.43 6.39 8.71 -92.71 -0.81 5.58 16 37 H 0.17 3.10 8.06 -2.91 -0.02 3.07 16 38 H 0.16 3.77 8.06 -2.91 -0.02 3.74 16 39 H 0.12 5.50 5.71 -2.91 -0.02 5.48 16 40 H 0.27 16.14 8.31 -92.71 -0.77 15.37 16 41 H 0.09 5.12 6.42 -2.91 -0.02 5.11 16 Total: -1.00 -90.07 348.74 5.04 -85.03 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: 0.23 Total: 25.02 kcal Atomic # 6 Polarization: -31.38 SS G_CDS: 5.29 Total: -26.09 kcal Atomic # 7 Polarization: -77.21 SS G_CDS: -1.29 Total: -78.50 kcal Atomic # 8 Polarization: -50.75 SS G_CDS: -1.22 Total: -51.97 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -90.07 5.04 -85.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294526061.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.013 kcal (2) G-P(sol) polarization free energy of solvation -90.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds