Wall clock time and date at job start Tue Mar 31 2020 07:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35716 * 116.99783 * 2 1 4 4 C 1.39187 * 119.86400 * 0.02562 * 3 2 1 5 5 C 1.37541 * 120.23709 * 180.02562 * 4 3 2 6 6 C 1.39852 * 119.96811 * 359.97438 * 5 4 3 7 7 C 1.47295 * 120.13867 * 179.97438 * 6 5 4 8 8 O 1.21624 * 120.00251 * 180.02562 * 7 6 5 9 9 N 1.34779 * 120.00049 * 0.02562 * 7 6 5 10 10 C 1.46498 * 120.00490 * 179.97438 * 9 7 6 11 11 C 1.52992 * 109.47601 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47404 * 300.00255 * 11 10 9 13 13 C 1.53005 * 109.46864 * 60.00273 * 11 10 9 14 14 C 1.50696 * 109.47731 * 180.02562 * 11 10 9 15 15 H 1.08005 * 119.99701 * 0.02562 * 14 11 10 16 16 C 1.37870 * 120.00579 * 180.02562 * 14 11 10 17 17 N 1.31513 * 119.99887 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 120.00188 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47399 * 60.00155 * 18 16 14 20 20 H 1.48505 * 109.46953 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47225 * 299.99754 * 18 16 14 22 22 C 1.40295 * 119.72704 * 0.02562 * 6 5 4 23 23 O 1.35668 * 120.11977 * 179.72937 * 22 6 5 24 24 C 1.38440 * 119.76318 * 359.97438 * 22 6 5 25 25 H 1.09001 * 109.47116 * 300.00196 * 1 2 3 26 26 H 1.09000 * 109.47304 * 59.99672 * 1 2 3 27 27 H 1.09004 * 109.47410 * 179.97438 * 1 2 3 28 28 H 1.07997 * 119.87872 * 0.02562 * 4 3 2 29 29 H 1.08001 * 120.01420 * 179.97438 * 5 4 3 30 30 H 0.96997 * 119.99744 * 359.97438 * 9 7 6 31 31 H 1.08994 * 109.47078 * 300.00238 * 10 9 7 32 32 H 1.09006 * 109.46989 * 59.99415 * 10 9 7 33 33 H 1.09006 * 109.46788 * 59.99954 * 12 11 10 34 34 H 1.08998 * 109.47222 * 179.97438 * 12 11 10 35 35 H 1.09001 * 109.47083 * 300.00102 * 12 11 10 36 36 H 1.08994 * 109.46970 * 59.99874 * 13 11 10 37 37 H 1.08998 * 109.46829 * 180.02562 * 13 11 10 38 38 H 1.09006 * 109.46914 * 299.99786 * 13 11 10 39 39 H 0.97004 * 120.00424 * 179.97438 * 17 16 14 40 40 H 0.96693 * 114.00097 * 89.99749 * 23 22 6 41 41 H 1.07997 * 119.98754 * 179.97438 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2842 2.3747 0.0005 5 6 1.9006 3.6043 0.0000 6 6 3.2967 3.6859 -0.0005 7 6 3.9608 5.0007 -0.0017 8 8 5.1751 5.0687 -0.0026 9 7 3.2227 6.1284 -0.0017 10 6 3.8830 7.4361 -0.0022 11 6 2.8254 8.5416 -0.0027 12 6 1.9516 8.4110 -1.2519 13 6 1.9517 8.4120 1.2466 14 6 3.5046 9.8868 -0.0040 15 1 4.5829 9.9472 -0.0047 16 6 2.7496 11.0404 -0.0041 17 7 1.4365 10.9668 -0.0036 18 14 3.5916 12.7078 -0.0063 19 1 4.4383 12.8332 -1.2198 20 1 2.5649 13.7808 -0.0054 21 1 4.4409 12.8351 1.2052 22 6 4.0623 2.5102 -0.0011 23 8 5.4172 2.5800 -0.0071 24 6 3.4302 1.2785 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 0.2060 2.3133 0.0014 29 1 1.3067 4.5064 0.0000 30 1 2.2542 6.0741 -0.0013 31 1 4.5058 7.5290 0.8874 32 1 4.5052 7.5286 -0.8925 33 1 1.4602 7.4379 -1.2514 34 1 1.1978 9.1983 -1.2520 35 1 2.5740 8.5032 -2.1420 36 1 2.5741 8.5051 2.1365 37 1 1.1979 9.1993 1.2460 38 1 1.4603 7.4390 1.2470 39 1 0.9052 11.7784 -0.0033 40 1 5.8138 2.6024 0.8744 41 1 4.0160 0.3712 -0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315337052.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:19 Heat of formation + Delta-G solvation = -93.517927 kcal Electronic energy + Delta-G solvation = -23453.679741 eV Core-core repulsion = 19913.323966 eV Total energy + Delta-G solvation = -3540.355775 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.68121 -39.35004 -38.04225 -36.21815 -36.09461 -33.26553 -31.41273 -30.57677 -29.66283 -27.69874 -25.73737 -25.64055 -24.95993 -23.40222 -22.35569 -20.25972 -19.14005 -18.70531 -17.53753 -17.05224 -16.74517 -16.08360 -15.83069 -15.12154 -14.97151 -14.79688 -14.49812 -14.34263 -14.15935 -13.40759 -12.96701 -12.88913 -12.76940 -12.57604 -12.44132 -12.17465 -11.54676 -11.41225 -11.19038 -11.15176 -10.84153 -10.78113 -10.73135 -10.38834 -10.20401 -9.63861 -9.52538 -9.22110 -9.03601 -8.80086 -8.55101 -8.40120 -8.21297 -6.02384 -4.12375 0.80001 1.04913 2.85053 3.00760 3.30330 3.34416 3.38065 3.73139 3.83563 4.22079 4.40183 4.46669 4.73658 4.78207 4.81803 5.01107 5.11152 5.17466 5.24405 5.28662 5.66678 5.85892 6.06013 6.10330 6.26897 6.29064 6.33974 6.50808 6.78927 6.80547 6.93622 7.01274 7.01617 7.04196 7.35016 7.54758 7.66516 7.68962 8.00154 8.06360 8.16272 8.38386 8.73818 8.88364 9.53423 10.99058 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.027637 B = 0.003353 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.889024 B = 8348.781284 C = 9162.790465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.314 6.314 3 C 0.162 3.838 4 C -0.226 4.226 5 C -0.030 4.030 6 C -0.194 4.194 7 C 0.549 3.451 8 O -0.537 6.537 9 N -0.714 5.714 10 C 0.133 3.867 11 C 0.056 3.944 12 C -0.131 4.131 13 C -0.130 4.130 14 C -0.506 4.506 15 H 0.057 0.943 16 C 0.067 3.933 17 N -0.887 5.887 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C 0.206 3.794 23 O -0.473 6.473 24 C -0.194 4.194 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.101 0.899 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.395 0.605 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.005 0.995 34 H 0.086 0.914 35 H 0.027 0.973 36 H 0.027 0.973 37 H 0.086 0.914 38 H 0.005 0.995 39 H 0.260 0.740 40 H 0.398 0.602 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.525 -19.365 1.706 19.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.227 6.227 3 C 0.116 3.884 4 C -0.244 4.244 5 C -0.049 4.049 6 C -0.198 4.198 7 C 0.336 3.664 8 O -0.416 6.416 9 N -0.365 5.365 10 C 0.011 3.989 11 C 0.055 3.945 12 C -0.188 4.188 13 C -0.188 4.188 14 C -0.545 4.545 15 H 0.076 0.924 16 C -0.135 4.135 17 N -0.525 5.525 18 Si 0.722 3.278 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C 0.159 3.841 23 O -0.284 6.284 24 C -0.213 4.213 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.119 0.881 28 H 0.154 0.846 29 H 0.153 0.847 30 H 0.231 0.769 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.024 0.976 34 H 0.104 0.896 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.104 0.896 38 H 0.024 0.976 39 H 0.070 0.930 40 H 0.256 0.744 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.792 -19.343 1.104 19.742 hybrid contribution -0.321 1.044 0.454 1.183 sum -4.113 -18.300 1.558 18.821 Atomic orbital electron populations 1.23133 0.77877 1.04165 1.01826 1.86033 1.21820 1.26814 1.88046 1.18945 0.91738 0.84243 0.93454 1.21164 1.00444 0.91844 1.10967 1.21084 0.93014 0.97761 0.93022 1.20512 0.93813 0.94298 1.11206 1.17924 0.87114 0.83697 0.77678 1.90773 1.13197 1.87391 1.50188 1.46242 1.10224 1.06520 1.73559 1.21721 0.96455 0.80183 1.00583 1.18354 0.91413 0.91914 0.92798 1.21835 1.00829 0.98513 0.97665 1.21831 1.00823 0.98517 0.97636 1.20953 0.92943 0.89683 1.50921 0.92448 1.24872 0.94841 0.98990 0.94768 1.69790 1.04070 1.28100 1.50564 0.86628 0.79131 0.83363 0.78701 1.20264 1.21341 1.20281 1.18063 0.83704 0.89734 0.92608 1.84735 1.14362 1.95754 1.33560 1.20551 0.91791 0.98328 1.10671 0.92248 0.92247 0.88067 0.84645 0.84674 0.76912 0.92641 0.92623 0.97638 0.89572 0.95370 0.95394 0.89572 0.97640 0.92960 0.74388 0.84096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.80 101.05 0.99 1.14 16 2 O -0.31 -3.07 10.48 -18.85 -0.20 -3.27 16 3 C 0.16 1.79 6.69 -39.06 -0.26 1.53 16 4 C -0.23 -2.34 9.01 -39.48 -0.36 -2.69 16 5 C -0.03 -0.36 9.52 -39.23 -0.37 -0.74 16 6 C -0.19 -2.90 5.89 -104.84 -0.62 -3.52 16 7 C 0.55 10.11 7.76 -12.58 -0.10 10.02 16 8 O -0.54 -11.53 15.15 -16.67 -0.25 -11.78 16 9 N -0.71 -13.08 4.91 -61.43 -0.30 -13.38 16 10 C 0.13 2.86 4.50 -4.05 -0.02 2.84 16 11 C 0.06 1.29 0.50 -155.66 -0.08 1.22 16 12 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 13 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 14 C -0.51 -13.28 8.01 -34.44 -0.28 -13.55 16 15 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 16 C 0.07 1.75 5.15 -17.82 -0.09 1.65 16 17 N -0.89 -23.50 9.35 55.43 0.52 -22.98 16 18 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 22 C 0.21 2.86 6.71 -38.73 -0.26 2.60 16 23 O -0.47 -6.70 11.56 -40.63 -0.47 -7.17 16 24 C -0.19 -2.30 9.91 -39.34 -0.39 -2.69 16 25 H 0.06 0.29 7.65 -51.93 -0.40 -0.10 16 26 H 0.06 0.31 7.65 -51.93 -0.40 -0.09 16 27 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.14 1.03 6.27 -52.49 -0.33 0.70 16 29 H 0.14 1.46 6.39 -52.49 -0.34 1.13 16 30 H 0.39 6.46 4.18 -40.82 -0.17 6.29 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 34 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 35 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 38 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 39 H 0.26 6.68 8.31 -40.82 -0.34 6.35 16 40 H 0.40 4.02 9.06 45.56 0.41 4.43 16 41 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 333.81 15.07 5.03 5.03 Total: -1.00 -31.07 333.81 -6.56 -37.63 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -4.64 Total: 7.68 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -1.23 Total: -7.45 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.22 Total: -36.36 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.92 Total: -22.23 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.07 -6.56 -37.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315337052.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.892 kcal (2) G-P(sol) polarization free energy of solvation -31.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds