Wall clock time and date at job start Tue Mar 31 2020 07:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35716 * 116.99783 * 2 1 4 4 C 1.39187 * 119.86400 * 0.02562 * 3 2 1 5 5 C 1.37541 * 120.23709 * 180.02562 * 4 3 2 6 6 C 1.39852 * 119.96811 * 359.97438 * 5 4 3 7 7 C 1.47295 * 120.13867 * 179.97438 * 6 5 4 8 8 O 1.21624 * 120.00251 * 180.02562 * 7 6 5 9 9 N 1.34779 * 120.00049 * 0.02562 * 7 6 5 10 10 C 1.46498 * 120.00490 * 179.97438 * 9 7 6 11 11 C 1.52992 * 109.47601 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47404 * 300.00255 * 11 10 9 13 13 C 1.53005 * 109.46864 * 60.00273 * 11 10 9 14 14 C 1.50696 * 109.47731 * 180.02562 * 11 10 9 15 15 H 1.08005 * 119.99701 * 0.02562 * 14 11 10 16 16 C 1.37870 * 120.00579 * 180.02562 * 14 11 10 17 17 N 1.31513 * 119.99887 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 120.00188 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47399 * 60.00155 * 18 16 14 20 20 H 1.48505 * 109.46953 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47225 * 299.99754 * 18 16 14 22 22 C 1.40295 * 119.72704 * 0.02562 * 6 5 4 23 23 O 1.35668 * 120.11977 * 179.72937 * 22 6 5 24 24 C 1.38440 * 119.76318 * 359.97438 * 22 6 5 25 25 H 1.09001 * 109.47116 * 300.00196 * 1 2 3 26 26 H 1.09000 * 109.47304 * 59.99672 * 1 2 3 27 27 H 1.09004 * 109.47410 * 179.97438 * 1 2 3 28 28 H 1.07997 * 119.87872 * 0.02562 * 4 3 2 29 29 H 1.08001 * 120.01420 * 179.97438 * 5 4 3 30 30 H 0.96997 * 119.99744 * 359.97438 * 9 7 6 31 31 H 1.08994 * 109.47078 * 300.00238 * 10 9 7 32 32 H 1.09006 * 109.46989 * 59.99415 * 10 9 7 33 33 H 1.09006 * 109.46788 * 59.99954 * 12 11 10 34 34 H 1.08998 * 109.47222 * 179.97438 * 12 11 10 35 35 H 1.09001 * 109.47083 * 300.00102 * 12 11 10 36 36 H 1.08994 * 109.46970 * 59.99874 * 13 11 10 37 37 H 1.08998 * 109.46829 * 180.02562 * 13 11 10 38 38 H 1.09006 * 109.46914 * 299.99786 * 13 11 10 39 39 H 0.97004 * 120.00424 * 179.97438 * 17 16 14 40 40 H 0.96693 * 114.00097 * 89.99749 * 23 22 6 41 41 H 1.07997 * 119.98754 * 179.97438 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2842 2.3747 0.0005 5 6 1.9006 3.6043 0.0000 6 6 3.2967 3.6859 -0.0005 7 6 3.9608 5.0007 -0.0017 8 8 5.1751 5.0687 -0.0026 9 7 3.2227 6.1284 -0.0017 10 6 3.8830 7.4361 -0.0022 11 6 2.8254 8.5416 -0.0027 12 6 1.9516 8.4110 -1.2519 13 6 1.9517 8.4120 1.2466 14 6 3.5046 9.8868 -0.0040 15 1 4.5829 9.9472 -0.0047 16 6 2.7496 11.0404 -0.0041 17 7 1.4365 10.9668 -0.0036 18 14 3.5916 12.7078 -0.0063 19 1 4.4383 12.8332 -1.2198 20 1 2.5649 13.7808 -0.0054 21 1 4.4409 12.8351 1.2052 22 6 4.0623 2.5102 -0.0011 23 8 5.4172 2.5800 -0.0071 24 6 3.4302 1.2785 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 0.2060 2.3133 0.0014 29 1 1.3067 4.5064 0.0000 30 1 2.2542 6.0741 -0.0013 31 1 4.5058 7.5290 0.8874 32 1 4.5052 7.5286 -0.8925 33 1 1.4602 7.4379 -1.2514 34 1 1.1978 9.1983 -1.2520 35 1 2.5740 8.5032 -2.1420 36 1 2.5741 8.5051 2.1365 37 1 1.1979 9.1993 1.2460 38 1 1.4603 7.4390 1.2470 39 1 0.9052 11.7784 -0.0033 40 1 5.8138 2.6024 0.8744 41 1 4.0160 0.3712 -0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315337052.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:18 Heat of formation + Delta-G solvation = -113.965539 kcal Electronic energy + Delta-G solvation = -23454.566416 eV Core-core repulsion = 19913.323966 eV Total energy + Delta-G solvation = -3541.242450 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.67643 -40.48781 -39.20193 -37.93607 -37.05131 -34.96404 -32.93981 -31.79588 -30.68661 -28.33275 -27.56300 -27.43164 -26.68385 -24.46025 -23.35134 -21.60707 -20.64816 -19.89216 -18.84526 -17.95396 -17.75623 -17.66706 -16.74490 -16.61142 -16.36544 -16.25583 -15.85439 -15.44923 -15.19106 -14.77807 -14.56788 -14.48383 -13.96295 -13.83624 -13.39405 -13.19002 -13.13811 -13.06045 -12.67527 -12.62381 -12.33648 -12.25157 -12.13006 -11.93236 -11.73535 -11.48413 -11.27087 -10.81215 -10.67874 -10.39272 -9.97939 -9.93979 -9.31170 -8.02022 -6.17627 -0.20921 0.15935 1.44507 1.45600 1.52228 1.85964 2.15497 2.30216 2.49956 2.69602 3.21541 3.30453 3.64159 3.80900 3.96042 4.21560 4.32372 4.42862 4.44246 4.45356 4.51354 4.70250 4.76671 4.83907 4.94901 5.01270 5.05131 5.11176 5.16235 5.19480 5.24196 5.36398 5.41233 5.58616 5.67285 5.67557 6.15371 6.21341 6.28337 6.43792 6.67161 6.76841 6.85872 7.31859 7.49914 8.96786 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.027637 B = 0.003353 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.889024 B = 8348.781284 C = 9162.790465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.324 6.324 3 C 0.172 3.828 4 C -0.217 4.217 5 C -0.026 4.026 6 C -0.223 4.223 7 C 0.549 3.451 8 O -0.577 6.577 9 N -0.708 5.708 10 C 0.149 3.851 11 C 0.052 3.948 12 C -0.121 4.121 13 C -0.120 4.120 14 C -0.532 4.532 15 H 0.043 0.957 16 C 0.030 3.970 17 N -0.898 5.898 18 Si 0.944 3.056 19 H -0.278 1.278 20 H -0.282 1.282 21 H -0.277 1.277 22 C 0.197 3.803 23 O -0.492 6.492 24 C -0.199 4.199 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.122 0.878 28 H 0.170 0.830 29 H 0.150 0.850 30 H 0.406 0.594 31 H 0.040 0.960 32 H 0.036 0.964 33 H 0.037 0.963 34 H 0.064 0.936 35 H 0.016 0.984 36 H 0.018 0.982 37 H 0.064 0.936 38 H 0.037 0.963 39 H 0.261 0.739 40 H 0.410 0.590 41 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.524 -21.088 1.821 22.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.236 6.236 3 C 0.125 3.875 4 C -0.235 4.235 5 C -0.044 4.044 6 C -0.227 4.227 7 C 0.338 3.662 8 O -0.458 6.458 9 N -0.360 5.360 10 C 0.025 3.975 11 C 0.051 3.949 12 C -0.179 4.179 13 C -0.178 4.178 14 C -0.570 4.570 15 H 0.062 0.938 16 C -0.170 4.170 17 N -0.536 5.536 18 Si 0.771 3.229 19 H -0.204 1.204 20 H -0.207 1.207 21 H -0.203 1.203 22 C 0.150 3.850 23 O -0.306 6.306 24 C -0.218 4.218 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.140 0.860 28 H 0.187 0.813 29 H 0.167 0.833 30 H 0.244 0.756 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.083 0.917 35 H 0.035 0.965 36 H 0.037 0.963 37 H 0.083 0.917 38 H 0.056 0.944 39 H 0.070 0.930 40 H 0.270 0.730 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -5.826 -21.087 1.227 21.911 hybrid contribution 0.231 1.427 0.423 1.506 sum -5.594 -19.660 1.650 20.507 Atomic orbital electron populations 1.23504 0.75589 1.06114 1.02967 1.86044 1.24149 1.26051 1.87387 1.19067 0.91578 0.85127 0.91737 1.21463 1.02051 0.90654 1.09367 1.21239 0.91764 0.99218 0.92217 1.20299 0.95118 0.92369 1.14884 1.18467 0.86736 0.84748 0.76272 1.90742 1.15021 1.88057 1.51986 1.46023 1.10670 1.05424 1.73858 1.21279 0.95744 0.81522 0.98908 1.18350 0.91806 0.91135 0.93578 1.21681 0.99955 0.99498 0.96743 1.21669 0.99928 0.99523 0.96673 1.21251 0.92620 0.91659 1.51484 0.93821 1.25427 0.95456 1.01487 0.94629 1.69888 1.04599 1.28622 1.50539 0.85832 0.78338 0.80321 0.78396 1.20390 1.20696 1.20275 1.18226 0.83505 0.90266 0.93019 1.84683 1.15045 1.95860 1.34968 1.20630 0.92637 0.97857 1.10697 0.90940 0.91147 0.85971 0.81314 0.83281 0.75582 0.94197 0.94595 0.94452 0.91675 0.96487 0.96286 0.91726 0.94386 0.92968 0.72957 0.82964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.80 113.37 1.11 1.20 16 2 O -0.32 -5.23 10.48 -90.37 -0.95 -6.17 16 3 C 0.17 3.29 6.69 22.60 0.15 3.44 16 4 C -0.22 -3.71 9.01 22.33 0.20 -3.51 16 5 C -0.03 -0.56 9.52 22.50 0.21 -0.34 16 6 C -0.22 -6.45 5.89 -20.00 -0.12 -6.57 16 7 C 0.55 20.24 7.76 86.62 0.67 20.91 16 8 O -0.58 -25.46 15.15 16.86 0.26 -25.21 16 9 N -0.71 -25.53 4.91 -466.51 -2.29 -27.82 16 10 C 0.15 6.52 4.50 86.38 0.39 6.91 16 11 C 0.05 2.41 0.50 -52.93 -0.03 2.39 16 12 C -0.12 -5.38 8.08 71.98 0.58 -4.80 16 13 C -0.12 -5.28 8.08 71.98 0.58 -4.70 16 14 C -0.53 -28.32 8.01 25.60 0.21 -28.12 16 15 H 0.04 2.38 7.74 -2.91 -0.02 2.36 16 16 C 0.03 1.58 5.15 84.65 0.44 2.01 16 17 N -0.90 -47.56 9.35 21.44 0.20 -47.36 16 18 Si 0.94 42.67 29.54 68.60 2.03 44.69 16 19 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 20 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 22 C 0.20 5.35 6.71 22.82 0.15 5.50 16 23 O -0.49 -14.16 11.56 -68.88 -0.80 -14.95 16 24 C -0.20 -4.39 9.91 22.42 0.22 -4.16 16 25 H 0.07 0.39 7.65 -2.39 -0.02 0.37 16 26 H 0.07 0.41 7.65 -2.39 -0.02 0.39 16 27 H 0.12 0.43 8.14 -2.38 -0.02 0.41 16 28 H 0.17 1.72 6.27 -2.91 -0.02 1.70 16 29 H 0.15 2.73 6.39 -2.91 -0.02 2.71 16 30 H 0.41 12.50 4.18 -92.71 -0.39 12.12 16 31 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 33 H 0.04 1.37 6.86 -2.38 -0.02 1.36 16 34 H 0.06 3.20 6.07 -2.39 -0.01 3.18 16 35 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.06 3.15 6.07 -2.39 -0.01 3.13 16 38 H 0.04 1.37 6.86 -2.38 -0.02 1.36 16 39 H 0.26 13.32 8.31 -92.71 -0.77 12.55 16 40 H 0.41 8.60 9.06 -74.06 -0.67 7.93 16 41 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -67.64 333.81 3.24 -64.41 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: 0.01 Total: 22.23 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: 4.77 Total: -9.83 kcal Atomic # 7 Polarization: -73.09 SS G_CDS: -2.09 Total: -75.17 kcal Atomic # 8 Polarization: -44.85 SS G_CDS: -1.49 Total: -46.33 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Total: -67.64 3.24 -64.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315337052.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.558 kcal (2) G-P(sol) polarization free energy of solvation -67.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds