Wall clock time and date at job start Tue Mar 31 2020 07:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36002 * 117.00587 * 2 1 4 4 C 1.38467 * 120.00092 * 359.97298 * 3 2 1 5 5 C 1.38492 * 120.33570 * 179.97438 * 4 3 2 6 6 C 1.37792 * 120.34546 * 0.03019 * 5 4 3 7 7 C 1.39768 * 119.99772 * 359.73961 * 6 5 4 8 8 C 1.47549 * 120.16291 * 180.25561 * 7 6 5 9 9 O 1.21592 * 119.99237 * 180.23074 * 8 7 6 10 10 N 1.34772 * 120.00407 * 0.23025 * 8 7 6 11 11 C 1.46502 * 120.00045 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47048 * 180.02562 * 11 10 8 13 13 C 1.52995 * 109.46983 * 300.00178 * 12 11 10 14 14 C 1.52995 * 109.47031 * 60.00029 * 12 11 10 15 15 C 1.50695 * 109.46873 * 180.02562 * 12 11 10 16 16 H 1.07996 * 120.00514 * 1.34748 * 15 12 11 17 17 C 1.37889 * 119.99825 * 181.34637 * 15 12 11 18 18 N 1.31514 * 119.99910 * 193.98043 * 17 15 12 19 19 Si 1.86798 * 119.99902 * 13.97691 * 17 15 12 20 20 H 1.48498 * 109.47187 * 84.54731 * 19 17 15 21 21 H 1.48501 * 109.46984 * 204.54710 * 19 17 15 22 22 H 1.48507 * 109.47138 * 324.54908 * 19 17 15 23 23 C 1.39134 * 120.00394 * 180.02562 * 3 2 1 24 24 O 1.35739 * 120.17176 * 359.94831 * 23 3 2 25 25 H 1.09003 * 109.46922 * 59.99723 * 1 2 3 26 26 H 1.08995 * 109.47161 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46854 * 300.00740 * 1 2 3 28 28 H 1.08006 * 119.83594 * 0.02831 * 4 3 2 29 29 H 1.08007 * 119.82998 * 180.02562 * 5 4 3 30 30 H 1.07995 * 120.00517 * 179.97438 * 6 5 4 31 31 H 0.97001 * 119.99848 * 0.02562 * 10 8 7 32 32 H 1.08998 * 109.47107 * 300.00101 * 11 10 8 33 33 H 1.09001 * 109.46913 * 60.00254 * 11 10 8 34 34 H 1.09001 * 109.47592 * 69.37065 * 13 12 11 35 35 H 1.09002 * 109.47200 * 189.37112 * 13 12 11 36 36 H 1.09001 * 109.47623 * 309.36466 * 13 12 11 37 37 H 1.08998 * 109.47275 * 60.00002 * 14 12 11 38 38 H 1.09006 * 109.47350 * 179.97438 * 14 12 11 39 39 H 1.08997 * 109.47450 * 299.99867 * 14 12 11 40 40 H 0.96995 * 119.99984 * 180.02562 * 18 17 15 41 41 H 0.96701 * 113.99877 * 90.00854 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2117 0.0000 4 6 1.2926 2.3731 -0.0006 5 6 1.9142 3.6107 0.0000 6 6 3.2893 3.6990 0.0004 7 6 4.0642 2.5358 0.0059 8 6 5.5369 2.6261 0.0121 9 8 6.2081 1.6122 0.0126 10 7 6.1382 3.8323 0.0172 11 6 7.6004 3.9219 0.0240 12 6 8.0212 5.3929 0.0294 13 6 7.4736 6.0846 -1.2205 14 6 7.4625 6.0784 1.2779 15 6 9.5253 5.4850 0.0357 16 1 10.1216 4.5848 0.0138 17 6 10.1403 6.7186 0.0695 18 7 11.4235 6.8213 -0.1998 19 14 9.1509 8.2441 0.4975 20 1 9.0772 8.3883 1.9736 21 1 9.8098 9.4409 -0.0845 22 1 7.7789 8.1158 -0.0563 23 6 3.4360 1.2845 -0.0005 24 8 4.1787 0.1483 0.0000 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 0.2142 2.3136 -0.0005 29 1 1.3181 4.5113 -0.0001 30 1 3.7683 4.6669 0.0004 31 1 5.6027 4.6411 0.0172 32 1 7.9905 3.4294 0.9147 33 1 7.9985 3.4331 -0.8653 34 1 6.3892 6.1654 -1.1455 35 1 7.9073 7.0811 -1.3038 36 1 7.7341 5.5002 -2.1029 37 1 7.8526 5.5856 2.1684 38 1 7.7626 7.1264 1.2821 39 1 6.3746 6.0118 1.2729 40 1 11.8562 7.6890 -0.1757 41 1 4.3937 -0.1815 -0.8833 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315483161.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:22 Heat of formation + Delta-G solvation = -70.906030 kcal Electronic energy + Delta-G solvation = -23639.735061 eV Core-core repulsion = 20100.359811 eV Total energy + Delta-G solvation = -3539.375250 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.80206 -39.33420 -37.70866 -36.65986 -36.51270 -33.35091 -31.65727 -30.64549 -29.98223 -27.59957 -26.43331 -26.12613 -24.96739 -23.32377 -22.56129 -20.38360 -19.35501 -18.70436 -17.93913 -16.79188 -16.45159 -16.24420 -16.09047 -15.54764 -15.27864 -14.95369 -14.85250 -14.30811 -14.14008 -13.70605 -13.21887 -12.91943 -12.81600 -12.62006 -12.52284 -12.33925 -12.22278 -12.05789 -11.57864 -11.45212 -11.25386 -10.81529 -10.44748 -10.32058 -10.18422 -10.07990 -9.53126 -9.13074 -9.10870 -8.69983 -8.52919 -8.43941 -8.41211 -6.15328 -4.12645 0.60762 1.06058 2.83091 2.92178 3.23090 3.30041 3.37879 3.61675 3.69636 4.06425 4.34741 4.48281 4.66401 4.75822 4.78951 4.91152 4.94658 5.12303 5.15255 5.24954 5.51230 5.75518 5.84019 5.93897 6.02974 6.05216 6.09104 6.27162 6.34056 6.48009 6.51035 6.61548 6.68638 6.76472 6.93723 6.95478 7.20296 7.41689 7.70927 7.72071 7.90257 8.43851 8.57276 8.90421 9.48400 10.97813 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.034253 B = 0.003480 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.250063 B = 8043.542671 C = 8646.598118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.306 6.306 3 C 0.090 3.910 4 C -0.177 4.177 5 C -0.097 4.097 6 C -0.109 4.109 7 C -0.120 4.120 8 C 0.548 3.452 9 O -0.524 6.524 10 N -0.716 5.716 11 C 0.142 3.858 12 C 0.028 3.972 13 C -0.142 4.142 14 C -0.148 4.148 15 C -0.513 4.513 16 H 0.077 0.923 17 C 0.075 3.925 18 N -0.891 5.891 19 Si 0.885 3.115 20 H -0.286 1.286 21 H -0.305 1.305 22 H -0.249 1.249 23 C 0.136 3.864 24 O -0.464 6.464 25 H 0.055 0.945 26 H 0.101 0.899 27 H 0.055 0.945 28 H 0.134 0.866 29 H 0.133 0.867 30 H 0.133 0.867 31 H 0.395 0.605 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.021 0.979 35 H 0.057 0.943 36 H 0.048 0.952 37 H 0.054 0.946 38 H 0.042 0.958 39 H 0.029 0.971 40 H 0.265 0.735 41 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.402 -6.719 -1.261 25.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.220 6.220 3 C 0.044 3.956 4 C -0.196 4.196 5 C -0.115 4.115 6 C -0.128 4.128 7 C -0.123 4.123 8 C 0.334 3.666 9 O -0.402 6.402 10 N -0.368 5.368 11 C 0.020 3.980 12 C 0.027 3.973 13 C -0.200 4.200 14 C -0.205 4.205 15 C -0.551 4.551 16 H 0.095 0.905 17 C -0.127 4.127 18 N -0.527 5.527 19 Si 0.718 3.282 20 H -0.213 1.213 21 H -0.234 1.234 22 H -0.175 1.175 23 C 0.089 3.911 24 O -0.273 6.273 25 H 0.074 0.926 26 H 0.119 0.881 27 H 0.074 0.926 28 H 0.152 0.848 29 H 0.151 0.849 30 H 0.151 0.849 31 H 0.231 0.769 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.040 0.960 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.048 0.952 40 H 0.075 0.925 41 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -23.644 -7.487 -0.680 24.811 hybrid contribution -0.928 1.511 -0.151 1.780 sum -24.573 -5.976 -0.831 25.303 Atomic orbital electron populations 1.23097 0.78484 1.04120 1.01282 1.86174 1.21138 1.25913 1.88727 1.19352 0.91467 0.85145 0.99642 1.21285 1.00210 0.91892 1.06257 1.20866 0.94294 0.97212 0.99146 1.21225 0.93857 0.97531 1.00233 1.20390 0.94491 0.92790 1.04671 1.17926 0.86429 0.84266 0.78012 1.90805 1.65395 1.34889 1.49075 1.46240 1.09533 1.07225 1.73828 1.21549 0.76039 0.98648 1.01739 1.18722 0.97189 0.89906 0.91470 1.22303 0.96868 1.01459 0.99342 1.22370 0.97592 1.00152 1.00414 1.20717 0.87802 0.94497 1.52090 0.90480 1.24977 0.94775 0.98765 0.94213 1.69949 1.10705 1.24999 1.47093 0.87296 0.80461 0.82135 0.78305 1.21336 1.23406 1.17517 1.17694 0.85930 0.86322 1.01174 1.84819 1.71344 1.38060 1.33097 0.92636 0.88083 0.92600 0.84803 0.84876 0.84917 0.76928 0.91769 0.91673 0.96031 0.92465 0.93328 0.92688 0.93987 0.95250 0.92543 0.75188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.35 10.28 -34.29 -0.35 -3.70 16 3 C 0.09 1.05 6.69 -39.16 -0.26 0.79 16 4 C -0.18 -1.62 9.03 -39.40 -0.36 -1.97 16 5 C -0.10 -0.87 10.02 -39.65 -0.40 -1.27 16 6 C -0.11 -1.21 9.53 -39.17 -0.37 -1.59 16 7 C -0.12 -1.70 5.88 -104.86 -0.62 -2.32 16 8 C 0.55 9.53 7.76 -12.47 -0.10 9.43 16 9 O -0.52 -10.89 15.16 -16.61 -0.25 -11.14 16 10 N -0.72 -12.04 4.95 -61.35 -0.30 -12.34 16 11 C 0.14 2.87 4.49 -4.04 -0.02 2.85 16 12 C 0.03 0.61 0.50 -155.67 -0.08 0.54 16 13 C -0.14 -2.85 7.53 37.15 0.28 -2.57 16 14 C -0.15 -2.99 7.52 37.16 0.28 -2.71 16 15 C -0.51 -13.75 8.62 -34.44 -0.30 -14.04 16 16 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 17 C 0.08 2.09 5.32 -17.82 -0.09 1.99 16 18 N -0.89 -26.59 13.96 55.43 0.77 -25.82 16 19 Si 0.89 20.94 22.79 -169.99 -3.87 17.06 16 20 H -0.29 -6.75 7.10 56.52 0.40 -6.35 16 21 H -0.31 -7.40 7.11 56.52 0.40 -7.00 16 22 H -0.25 -5.31 4.65 56.52 0.26 -5.05 16 23 C 0.14 1.92 6.73 -38.58 -0.26 1.66 16 24 O -0.46 -6.98 11.36 -47.52 -0.54 -7.52 16 25 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 26 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 28 H 0.13 0.83 6.27 -52.48 -0.33 0.50 16 29 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 30 H 0.13 1.26 6.40 -52.49 -0.34 0.92 16 31 H 0.39 5.70 4.29 -40.82 -0.17 5.52 16 32 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 33 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 34 H 0.02 0.35 7.13 -51.93 -0.37 -0.02 16 35 H 0.06 1.22 4.30 -51.93 -0.22 1.00 16 36 H 0.05 0.96 8.12 -51.93 -0.42 0.54 16 37 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.04 0.89 2.25 -51.93 -0.12 0.78 16 39 H 0.03 0.48 6.86 -51.93 -0.36 0.13 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.39 4.44 9.06 45.56 0.41 4.85 16 LS Contribution 323.72 15.07 4.88 4.88 Total: -1.00 -33.61 323.72 -5.49 -39.09 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -4.52 Total: 7.55 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: -1.30 Total: -8.07 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: 0.47 Total: -38.16 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -1.14 Total: -22.36 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -3.87 Total: 17.06 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.61 -5.49 -39.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315483161.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.811 kcal (2) G-P(sol) polarization free energy of solvation -33.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds