Wall clock time and date at job start Tue Mar 31 2020 07:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36002 * 117.00587 * 2 1 4 4 C 1.38467 * 120.00092 * 359.97298 * 3 2 1 5 5 C 1.38492 * 120.33570 * 179.97438 * 4 3 2 6 6 C 1.37792 * 120.34546 * 0.03019 * 5 4 3 7 7 C 1.39768 * 119.99772 * 359.73961 * 6 5 4 8 8 C 1.47549 * 120.16291 * 180.25561 * 7 6 5 9 9 O 1.21592 * 119.99237 * 180.23074 * 8 7 6 10 10 N 1.34772 * 120.00407 * 0.23025 * 8 7 6 11 11 C 1.46502 * 120.00045 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47048 * 180.02562 * 11 10 8 13 13 C 1.52995 * 109.46983 * 300.00178 * 12 11 10 14 14 C 1.52995 * 109.47031 * 60.00029 * 12 11 10 15 15 C 1.50695 * 109.46873 * 180.02562 * 12 11 10 16 16 H 1.07996 * 120.00514 * 1.34748 * 15 12 11 17 17 C 1.37889 * 119.99825 * 181.34637 * 15 12 11 18 18 N 1.31514 * 119.99910 * 193.98043 * 17 15 12 19 19 Si 1.86798 * 119.99902 * 13.97691 * 17 15 12 20 20 H 1.48498 * 109.47187 * 84.54731 * 19 17 15 21 21 H 1.48501 * 109.46984 * 204.54710 * 19 17 15 22 22 H 1.48507 * 109.47138 * 324.54908 * 19 17 15 23 23 C 1.39134 * 120.00394 * 180.02562 * 3 2 1 24 24 O 1.35739 * 120.17176 * 359.94831 * 23 3 2 25 25 H 1.09003 * 109.46922 * 59.99723 * 1 2 3 26 26 H 1.08995 * 109.47161 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46854 * 300.00740 * 1 2 3 28 28 H 1.08006 * 119.83594 * 0.02831 * 4 3 2 29 29 H 1.08007 * 119.82998 * 180.02562 * 5 4 3 30 30 H 1.07995 * 120.00517 * 179.97438 * 6 5 4 31 31 H 0.97001 * 119.99848 * 0.02562 * 10 8 7 32 32 H 1.08998 * 109.47107 * 300.00101 * 11 10 8 33 33 H 1.09001 * 109.46913 * 60.00254 * 11 10 8 34 34 H 1.09001 * 109.47592 * 69.37065 * 13 12 11 35 35 H 1.09002 * 109.47200 * 189.37112 * 13 12 11 36 36 H 1.09001 * 109.47623 * 309.36466 * 13 12 11 37 37 H 1.08998 * 109.47275 * 60.00002 * 14 12 11 38 38 H 1.09006 * 109.47350 * 179.97438 * 14 12 11 39 39 H 1.08997 * 109.47450 * 299.99867 * 14 12 11 40 40 H 0.96995 * 119.99984 * 180.02562 * 18 17 15 41 41 H 0.96701 * 113.99877 * 90.00854 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2117 0.0000 4 6 1.2926 2.3731 -0.0006 5 6 1.9142 3.6107 0.0000 6 6 3.2893 3.6990 0.0004 7 6 4.0642 2.5358 0.0059 8 6 5.5369 2.6261 0.0121 9 8 6.2081 1.6122 0.0126 10 7 6.1382 3.8323 0.0172 11 6 7.6004 3.9219 0.0240 12 6 8.0212 5.3929 0.0294 13 6 7.4736 6.0846 -1.2205 14 6 7.4625 6.0784 1.2779 15 6 9.5253 5.4850 0.0357 16 1 10.1216 4.5848 0.0138 17 6 10.1403 6.7186 0.0695 18 7 11.4235 6.8213 -0.1998 19 14 9.1509 8.2441 0.4975 20 1 9.0772 8.3883 1.9736 21 1 9.8098 9.4409 -0.0845 22 1 7.7789 8.1158 -0.0563 23 6 3.4360 1.2845 -0.0005 24 8 4.1787 0.1483 0.0000 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 0.2142 2.3136 -0.0005 29 1 1.3181 4.5113 -0.0001 30 1 3.7683 4.6669 0.0004 31 1 5.6027 4.6411 0.0172 32 1 7.9905 3.4294 0.9147 33 1 7.9985 3.4331 -0.8653 34 1 6.3892 6.1654 -1.1455 35 1 7.9073 7.0811 -1.3038 36 1 7.7341 5.5002 -2.1029 37 1 7.8526 5.5856 2.1684 38 1 7.7626 7.1264 1.2821 39 1 6.3746 6.0118 1.2729 40 1 11.8562 7.6890 -0.1757 41 1 4.3937 -0.1815 -0.8833 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315483161.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:22 Heat of formation + Delta-G solvation = -96.575820 kcal Electronic energy + Delta-G solvation = -23640.848186 eV Core-core repulsion = 20100.359811 eV Total energy + Delta-G solvation = -3540.488375 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.74263 -40.51735 -38.82044 -38.06062 -37.54109 -35.01198 -33.52038 -31.67899 -30.75534 -28.17578 -28.03065 -27.64601 -26.94961 -24.42723 -23.39513 -21.60121 -20.99202 -19.83580 -18.91041 -18.09544 -17.70225 -17.55065 -17.05988 -16.90199 -16.35101 -16.32191 -16.17168 -15.24315 -15.15918 -14.93803 -14.90710 -14.63559 -14.33979 -14.00143 -13.74566 -13.50618 -13.29251 -13.07824 -12.92859 -12.39008 -12.23612 -12.13643 -12.03622 -11.94663 -11.83016 -11.76426 -11.09244 -10.83953 -10.61403 -10.38251 -10.15569 -9.83058 -9.20808 -8.29550 -6.31748 -0.30813 0.26543 1.37394 1.39413 1.52584 1.84130 2.00426 2.35929 2.46429 2.69117 3.06540 3.20461 3.66163 3.89009 4.03511 4.08925 4.17188 4.31746 4.40550 4.40929 4.42556 4.43727 4.64589 4.76412 4.77146 4.82155 4.86745 4.94190 5.05798 5.09876 5.14923 5.17521 5.32116 5.40353 5.51630 5.57825 5.72177 5.80202 6.26044 6.30347 6.59445 6.73061 6.80846 7.24693 7.33145 8.87864 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.034253 B = 0.003480 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.250063 B = 8043.542671 C = 8646.598118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.332 6.332 3 C 0.082 3.918 4 C -0.162 4.162 5 C -0.084 4.084 6 C -0.107 4.107 7 C -0.143 4.143 8 C 0.547 3.453 9 O -0.571 6.571 10 N -0.703 5.703 11 C 0.158 3.842 12 C 0.029 3.971 13 C -0.142 4.142 14 C -0.149 4.149 15 C -0.520 4.520 16 H 0.025 0.975 17 C 0.015 3.985 18 N -0.948 5.948 19 Si 0.946 3.054 20 H -0.282 1.282 21 H -0.315 1.315 22 H -0.199 1.199 23 C 0.104 3.896 24 O -0.489 6.489 25 H 0.073 0.927 26 H 0.115 0.885 27 H 0.069 0.931 28 H 0.170 0.830 29 H 0.176 0.824 30 H 0.153 0.847 31 H 0.411 0.589 32 H 0.040 0.960 33 H 0.042 0.958 34 H 0.068 0.932 35 H 0.047 0.953 36 H 0.040 0.960 37 H 0.044 0.956 38 H 0.038 0.962 39 H 0.075 0.925 40 H 0.265 0.735 41 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.868 -4.504 -1.090 30.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.246 6.246 3 C 0.036 3.964 4 C -0.181 4.181 5 C -0.102 4.102 6 C -0.126 4.126 7 C -0.147 4.147 8 C 0.335 3.665 9 O -0.451 6.451 10 N -0.356 5.356 11 C 0.034 3.966 12 C 0.027 3.973 13 C -0.199 4.199 14 C -0.205 4.205 15 C -0.558 4.558 16 H 0.044 0.956 17 C -0.182 4.182 18 N -0.587 5.587 19 Si 0.775 3.225 20 H -0.209 1.209 21 H -0.245 1.245 22 H -0.123 1.123 23 C 0.057 3.943 24 O -0.300 6.300 25 H 0.092 0.908 26 H 0.133 0.867 27 H 0.088 0.912 28 H 0.188 0.812 29 H 0.193 0.807 30 H 0.171 0.829 31 H 0.250 0.750 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.087 0.913 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.094 0.906 40 H 0.074 0.926 41 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -29.177 -5.274 -0.513 29.655 hybrid contribution 0.717 0.645 -0.229 0.991 sum -28.460 -4.629 -0.742 28.844 Atomic orbital electron populations 1.23435 0.76001 1.05732 1.02764 1.86147 1.23745 1.26014 1.88682 1.19415 0.90730 0.86468 0.99749 1.21754 1.01893 0.90913 1.03511 1.21343 0.93548 0.98624 0.96687 1.21497 0.94851 0.96924 0.99345 1.20153 0.92191 0.94369 1.07961 1.18507 0.88048 0.83443 0.76528 1.90777 1.66858 1.36400 1.51075 1.45924 1.07775 1.08043 1.73873 1.21072 0.78346 0.97541 0.99661 1.18647 0.93768 0.91083 0.93766 1.22228 0.99730 1.00225 0.97696 1.22314 1.00482 0.99146 0.98598 1.21035 0.90882 0.92736 1.51179 0.95624 1.25904 0.95760 1.02580 0.93959 1.70118 1.13201 1.25895 1.49465 0.86317 0.81235 0.76772 0.78206 1.20917 1.24459 1.12257 1.18051 0.87260 0.85898 1.03091 1.84769 1.72098 1.39037 1.34114 0.90804 0.86717 0.91223 0.81225 0.80707 0.82921 0.75039 0.94108 0.93930 0.91289 0.93390 0.94066 0.93641 0.94392 0.90609 0.92648 0.74470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.24 16 2 O -0.33 -6.70 10.28 -79.66 -0.82 -7.52 16 3 C 0.08 1.75 6.69 22.54 0.15 1.90 16 4 C -0.16 -2.19 9.03 22.38 0.20 -1.99 16 5 C -0.08 -1.03 10.02 22.22 0.22 -0.81 16 6 C -0.11 -1.93 9.53 22.53 0.21 -1.71 16 7 C -0.14 -3.87 5.88 -20.02 -0.12 -3.99 16 8 C 0.55 19.01 7.76 86.70 0.67 19.69 16 9 O -0.57 -24.88 15.16 16.93 0.26 -24.62 16 10 N -0.70 -22.61 4.95 -466.26 -2.31 -24.92 16 11 C 0.16 6.47 4.49 86.38 0.39 6.86 16 12 C 0.03 1.21 0.50 -52.93 -0.03 1.18 16 13 C -0.14 -5.25 7.53 71.98 0.54 -4.71 16 14 C -0.15 -5.51 7.52 71.98 0.54 -4.97 16 15 C -0.52 -28.95 8.62 25.60 0.22 -28.73 16 16 H 0.03 1.63 7.99 -2.91 -0.02 1.61 16 17 C 0.02 0.87 5.32 84.66 0.45 1.32 16 18 N -0.95 -59.13 13.96 21.45 0.30 -58.83 16 19 Si 0.95 42.24 22.79 68.60 1.56 43.81 16 20 H -0.28 -12.37 7.10 99.48 0.71 -11.67 16 21 H -0.32 -14.53 7.11 99.48 0.71 -13.82 16 22 H -0.20 -7.33 4.65 99.48 0.46 -6.87 16 23 C 0.10 2.90 6.73 22.92 0.15 3.05 16 24 O -0.49 -15.52 11.36 -63.28 -0.72 -16.23 16 25 H 0.07 0.39 7.66 -2.39 -0.02 0.37 16 26 H 0.11 0.68 8.14 -2.39 -0.02 0.67 16 27 H 0.07 0.44 7.66 -2.39 -0.02 0.42 16 28 H 0.17 1.04 6.27 -2.91 -0.02 1.02 16 29 H 0.18 0.77 8.06 -2.91 -0.02 0.74 16 30 H 0.15 2.03 6.40 -2.91 -0.02 2.01 16 31 H 0.41 10.21 4.29 -92.71 -0.40 9.81 16 32 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.04 1.91 8.14 -2.39 -0.02 1.90 16 34 H 0.07 1.91 7.13 -2.39 -0.02 1.89 16 35 H 0.05 1.87 4.30 -2.39 -0.01 1.86 16 36 H 0.04 1.57 8.12 -2.39 -0.02 1.55 16 37 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.04 1.45 2.25 -2.38 -0.01 1.44 16 39 H 0.08 2.10 6.86 -2.39 -0.02 2.09 16 40 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 41 H 0.40 9.98 9.06 -74.06 -0.67 9.31 16 Total: -1.00 -80.11 323.72 2.77 -77.34 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: -0.23 Total: 22.64 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: 4.73 Total: -11.66 kcal Atomic # 7 Polarization: -81.74 SS G_CDS: -2.01 Total: -83.75 kcal Atomic # 8 Polarization: -47.09 SS G_CDS: -1.28 Total: -48.37 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 1.56 Total: 43.81 kcal Total: -80.11 2.77 -77.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315483161.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.232 kcal (2) G-P(sol) polarization free energy of solvation -80.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds