Wall clock time and date at job start Tue Mar 31 2020 06:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42895 * 114.00166 * 2 1 4 4 C 1.53003 * 109.47417 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46839 * 64.99840 * 4 3 2 6 6 C 1.36864 * 119.99853 * 265.21917 * 5 4 3 7 7 H 1.08004 * 119.99555 * 136.98217 * 6 5 4 8 8 C 1.39047 * 120.00342 * 316.98627 * 6 5 4 9 9 N 1.31361 * 119.99701 * 343.43028 * 8 6 5 10 10 Si 1.86794 * 120.00213 * 163.43418 * 8 6 5 11 11 H 1.48503 * 109.47297 * 89.99957 * 10 8 6 12 12 H 1.48504 * 109.47099 * 209.99550 * 10 8 6 13 13 H 1.48499 * 109.47218 * 329.99481 * 10 8 6 14 14 C 1.34784 * 119.99827 * 85.22288 * 5 4 3 15 15 O 1.21588 * 120.00013 * 4.62030 * 14 5 4 16 16 C 1.47735 * 119.99585 * 184.62001 * 14 5 4 17 17 C 1.39678 * 120.12666 * 324.56263 * 16 14 5 18 18 C 1.37940 * 119.96024 * 180.25762 * 17 16 14 19 19 C 1.38308 * 120.21045 * 359.46354 * 18 17 16 20 20 C 1.50701 * 119.87112 * 180.25503 * 19 18 17 21 21 C 1.38824 * 120.25148 * 0.51844 * 19 18 17 22 22 O 1.35907 * 119.98213 * 179.74400 * 21 19 18 23 23 C 1.42903 * 117.00132 * 180.02562 * 22 21 19 24 24 C 1.38470 * 120.03795 * 359.76110 * 21 19 18 25 25 H 1.09008 * 109.47341 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47474 * 300.00101 * 1 2 3 27 27 H 1.09003 * 109.47409 * 60.00512 * 1 2 3 28 28 H 1.09003 * 109.47638 * 59.99651 * 3 2 1 29 29 H 1.09007 * 109.47109 * 299.99796 * 3 2 1 30 30 H 1.08991 * 109.46927 * 304.99852 * 4 3 2 31 31 H 1.09001 * 109.47000 * 184.99692 * 4 3 2 32 32 H 0.97008 * 120.00267 * 180.02562 * 9 8 6 33 33 H 1.07998 * 120.01968 * 359.97438 * 17 16 14 34 34 H 1.07998 * 119.89442 * 179.70402 * 18 17 16 35 35 H 1.08994 * 109.47483 * 270.25910 * 20 19 18 36 36 H 1.09005 * 109.47104 * 30.26036 * 20 19 18 37 37 H 1.09003 * 109.46663 * 150.25452 * 20 19 18 38 38 H 1.09001 * 109.46958 * 179.97438 * 23 22 21 39 39 H 1.08998 * 109.46847 * 299.99880 * 23 22 21 40 40 H 1.08997 * 109.47090 * 60.00471 * 23 22 21 41 41 H 1.08005 * 120.10714 * 180.02562 * 24 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.1919 -0.7866 -1.3062 7 1 3.8440 -1.3544 -2.1566 8 6 4.8583 -1.4276 -0.2678 9 7 5.5599 -0.7268 0.5938 10 14 4.7561 -3.2849 -0.0980 11 1 5.8619 -3.9137 -0.8643 12 1 4.8721 -3.6582 1.3347 13 1 3.4532 -3.7597 -0.6292 14 6 4.1705 1.3228 -2.3478 15 8 4.0611 2.5317 -2.2778 16 6 4.5160 0.6856 -3.6351 17 6 5.3301 -0.4492 -3.6595 18 6 5.6549 -1.0382 -4.8638 19 6 5.1679 -0.5153 -6.0480 20 6 5.5229 -1.1683 -7.3590 21 6 4.3579 0.6120 -6.0340 22 8 3.8866 1.1243 -7.2013 23 6 3.0591 2.2859 -7.1128 24 6 4.0300 1.2150 -4.8314 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6885 1.8464 0.8899 29 1 1.6885 1.8463 -0.8901 30 1 3.8507 0.5686 0.8427 31 1 3.9784 2.1765 0.0902 32 1 6.0252 -1.1740 1.3181 33 1 5.7087 -0.8625 -2.7364 34 1 6.2883 -1.9128 -4.8818 35 1 6.4405 -0.7270 -7.7481 36 1 5.6710 -2.2371 -7.2041 37 1 4.7139 -1.0133 -8.0729 38 1 2.7524 2.5906 -8.1134 39 1 2.1763 2.0584 -6.5153 40 1 3.6177 3.0950 -6.6424 41 1 3.3995 2.0919 -4.8192 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000318928392.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:53 Heat of formation + Delta-G solvation = -83.548144 kcal Electronic energy + Delta-G solvation = -24328.815373 eV Core-core repulsion = 20788.891920 eV Total energy + Delta-G solvation = -3539.923453 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.91612 -38.65390 -37.13220 -36.48169 -34.78096 -32.37025 -31.65264 -29.78122 -29.17961 -27.35806 -26.54916 -25.75382 -24.78119 -22.50624 -21.54296 -21.06642 -19.36530 -18.07572 -16.70473 -15.89144 -15.74426 -15.50238 -15.42443 -15.16450 -14.84117 -14.40736 -14.33210 -14.11241 -13.51377 -13.47923 -13.21840 -12.99892 -12.65931 -12.04959 -11.92750 -11.74534 -11.72548 -11.51932 -11.26097 -11.12306 -11.03577 -10.86139 -10.64672 -10.62233 -10.50411 -10.35995 -10.05981 -9.15460 -8.99977 -8.54168 -8.23587 -7.56650 -7.45396 -6.37489 -4.05989 1.63541 2.04523 3.14639 3.24324 3.30846 3.58173 3.80608 4.12515 4.45572 4.48079 4.71973 5.04778 5.23338 5.26095 5.35201 5.39992 5.59847 5.62810 5.68712 5.71915 5.81394 5.90276 5.93596 5.95623 6.01949 6.05184 6.11893 6.22739 6.27623 6.30584 6.57331 6.65837 6.88140 7.11753 7.17979 7.25390 7.33989 7.47230 7.78426 7.81068 7.97391 8.36147 9.05741 9.44224 9.87223 10.65965 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.013736 B = 0.006151 C = 0.004963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.966459 B = 4550.975168 C = 5640.166439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.052 3.948 4 C 0.119 3.881 5 N -0.417 5.417 6 C -0.324 4.324 7 H 0.091 0.909 8 C 0.048 3.952 9 N -0.862 5.862 10 Si 0.912 3.088 11 H -0.276 1.276 12 H -0.282 1.282 13 H -0.267 1.267 14 C 0.508 3.492 15 O -0.606 6.606 16 C -0.060 4.060 17 C -0.096 4.096 18 C -0.107 4.107 19 C -0.115 4.115 20 C -0.100 4.100 21 C 0.100 3.900 22 O -0.321 6.321 23 C 0.029 3.971 24 C -0.164 4.164 25 H 0.078 0.922 26 H 0.030 0.970 27 H 0.031 0.969 28 H 0.041 0.959 29 H 0.040 0.960 30 H 0.109 0.891 31 H 0.073 0.927 32 H 0.270 0.730 33 H 0.163 0.837 34 H 0.125 0.875 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.093 0.907 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.291 -0.324 -7.859 8.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.026 4.026 4 C -0.005 4.005 5 N -0.133 5.133 6 C -0.452 4.452 7 H 0.109 0.891 8 C -0.158 4.158 9 N -0.498 5.498 10 Si 0.738 3.262 11 H -0.202 1.202 12 H -0.208 1.208 13 H -0.191 1.191 14 C 0.297 3.703 15 O -0.493 6.493 16 C -0.063 4.063 17 C -0.114 4.114 18 C -0.126 4.126 19 C -0.116 4.116 20 C -0.156 4.156 21 C 0.056 3.944 22 O -0.235 6.235 23 C -0.067 4.067 24 C -0.184 4.184 25 H 0.096 0.904 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.127 0.873 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.180 0.820 34 H 0.143 0.857 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.112 0.888 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.096 -0.011 -7.776 8.788 hybrid contribution -0.540 -0.463 0.466 0.850 sum -4.636 -0.474 -7.310 8.669 Atomic orbital electron populations 1.22647 0.83352 1.01791 0.98830 1.88131 1.17443 1.27668 1.95038 1.23051 0.96468 0.84389 0.98709 1.21407 0.89111 0.99184 0.90783 1.43131 1.55542 1.07237 1.07427 1.19351 1.35603 0.82053 1.08151 0.89141 1.25358 0.94059 0.99874 0.96537 1.69879 1.27470 1.36654 1.15836 0.86167 0.79040 0.83172 0.77784 1.20210 1.20784 1.19145 1.18359 0.80768 0.86056 0.85088 1.90601 1.58100 1.14204 1.86425 1.19795 0.97851 0.95550 0.93086 1.22154 0.96206 0.93799 0.99280 1.20886 1.00116 1.00386 0.91168 1.19268 1.00441 0.95626 0.96274 1.20557 1.01437 0.99476 0.94169 1.18545 0.96892 0.94596 0.84364 1.85979 1.64759 1.43954 1.28804 1.22970 0.93900 0.86741 1.03065 1.21194 1.04312 1.01774 0.91149 0.90371 0.95122 0.95017 0.94101 0.94179 0.87348 0.90888 0.91952 0.81983 0.85688 0.91912 0.92019 0.91690 0.88827 0.92916 0.92709 0.85550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.36 -7.69 10.40 -35.23 -0.37 -8.06 16 3 C 0.05 1.06 6.25 37.16 0.23 1.29 16 4 C 0.12 2.81 5.32 -4.04 -0.02 2.79 16 5 N -0.42 -10.50 2.44 -115.92 -0.28 -10.78 16 6 C -0.32 -8.07 5.83 -15.01 -0.09 -8.16 16 7 H 0.09 2.25 6.47 -52.48 -0.34 1.91 16 8 C 0.05 1.18 4.93 -17.45 -0.09 1.10 16 9 N -0.86 -22.27 11.64 55.50 0.65 -21.63 16 10 Si 0.91 19.48 29.58 -169.99 -5.03 14.45 16 11 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 12 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 13 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 14 C 0.51 12.83 7.34 -12.38 -0.09 12.74 16 15 O -0.61 -16.34 16.46 5.29 0.09 -16.26 16 16 C -0.06 -1.34 5.46 -104.99 -0.57 -1.92 16 17 C -0.10 -2.00 7.79 -39.15 -0.30 -2.31 16 18 C -0.11 -1.89 9.67 -39.66 -0.38 -2.28 16 19 C -0.12 -1.95 5.90 -104.38 -0.62 -2.57 16 20 C -0.10 -1.33 9.78 36.01 0.35 -0.98 16 21 C 0.10 1.80 6.65 -39.28 -0.26 1.54 16 22 O -0.32 -5.08 9.52 -19.45 -0.19 -5.26 16 23 C 0.03 0.35 9.81 101.05 0.99 1.35 16 24 C -0.16 -3.29 8.60 -39.01 -0.34 -3.63 16 25 H 0.08 1.11 8.14 -51.92 -0.42 0.68 16 26 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.04 0.85 8.14 -51.92 -0.42 0.43 16 30 H 0.11 2.72 5.83 -51.93 -0.30 2.42 16 31 H 0.07 1.74 7.51 -51.93 -0.39 1.35 16 32 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 33 H 0.16 3.64 5.65 -52.49 -0.30 3.34 16 34 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 37 H 0.06 0.85 7.52 -51.93 -0.39 0.46 16 38 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.05 0.64 7.66 -51.93 -0.40 0.25 16 40 H 0.05 0.68 7.66 -51.93 -0.40 0.28 16 41 H 0.13 2.45 6.24 -52.48 -0.33 2.12 16 LS Contribution 341.69 15.07 5.15 5.15 Total: -1.00 -29.94 341.69 -5.83 -35.77 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -5.78 Total: 6.03 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -0.07 Total: 0.58 kcal Atomic # 7 Polarization: -32.77 SS G_CDS: 0.36 Total: -32.41 kcal Atomic # 8 Polarization: -29.11 SS G_CDS: -0.46 Total: -29.58 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.03 Total: 14.45 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.94 -5.83 -35.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000318928392.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.780 kcal (2) G-P(sol) polarization free energy of solvation -29.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds