Wall clock time and date at job start Tue Mar 31 2020 06:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42895 * 114.00166 * 2 1 4 4 C 1.53003 * 109.47417 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46839 * 64.99840 * 4 3 2 6 6 C 1.36864 * 119.99853 * 265.21917 * 5 4 3 7 7 H 1.08004 * 119.99555 * 136.98217 * 6 5 4 8 8 C 1.39047 * 120.00342 * 316.98627 * 6 5 4 9 9 N 1.31361 * 119.99701 * 343.43028 * 8 6 5 10 10 Si 1.86794 * 120.00213 * 163.43418 * 8 6 5 11 11 H 1.48503 * 109.47297 * 89.99957 * 10 8 6 12 12 H 1.48504 * 109.47099 * 209.99550 * 10 8 6 13 13 H 1.48499 * 109.47218 * 329.99481 * 10 8 6 14 14 C 1.34784 * 119.99827 * 85.22288 * 5 4 3 15 15 O 1.21588 * 120.00013 * 4.62030 * 14 5 4 16 16 C 1.47735 * 119.99585 * 184.62001 * 14 5 4 17 17 C 1.39678 * 120.12666 * 324.56263 * 16 14 5 18 18 C 1.37940 * 119.96024 * 180.25762 * 17 16 14 19 19 C 1.38308 * 120.21045 * 359.46354 * 18 17 16 20 20 C 1.50701 * 119.87112 * 180.25503 * 19 18 17 21 21 C 1.38824 * 120.25148 * 0.51844 * 19 18 17 22 22 O 1.35907 * 119.98213 * 179.74400 * 21 19 18 23 23 C 1.42903 * 117.00132 * 180.02562 * 22 21 19 24 24 C 1.38470 * 120.03795 * 359.76110 * 21 19 18 25 25 H 1.09008 * 109.47341 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47474 * 300.00101 * 1 2 3 27 27 H 1.09003 * 109.47409 * 60.00512 * 1 2 3 28 28 H 1.09003 * 109.47638 * 59.99651 * 3 2 1 29 29 H 1.09007 * 109.47109 * 299.99796 * 3 2 1 30 30 H 1.08991 * 109.46927 * 304.99852 * 4 3 2 31 31 H 1.09001 * 109.47000 * 184.99692 * 4 3 2 32 32 H 0.97008 * 120.00267 * 180.02562 * 9 8 6 33 33 H 1.07998 * 120.01968 * 359.97438 * 17 16 14 34 34 H 1.07998 * 119.89442 * 179.70402 * 18 17 16 35 35 H 1.08994 * 109.47483 * 270.25910 * 20 19 18 36 36 H 1.09005 * 109.47104 * 30.26036 * 20 19 18 37 37 H 1.09003 * 109.46663 * 150.25452 * 20 19 18 38 38 H 1.09001 * 109.46958 * 179.97438 * 23 22 21 39 39 H 1.08998 * 109.46847 * 299.99880 * 23 22 21 40 40 H 1.08997 * 109.47090 * 60.00471 * 23 22 21 41 41 H 1.08005 * 120.10714 * 180.02562 * 24 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.1919 -0.7866 -1.3062 7 1 3.8440 -1.3544 -2.1566 8 6 4.8583 -1.4276 -0.2678 9 7 5.5599 -0.7268 0.5938 10 14 4.7561 -3.2849 -0.0980 11 1 5.8619 -3.9137 -0.8643 12 1 4.8721 -3.6582 1.3347 13 1 3.4532 -3.7597 -0.6292 14 6 4.1705 1.3228 -2.3478 15 8 4.0611 2.5317 -2.2778 16 6 4.5160 0.6856 -3.6351 17 6 5.3301 -0.4492 -3.6595 18 6 5.6549 -1.0382 -4.8638 19 6 5.1679 -0.5153 -6.0480 20 6 5.5229 -1.1683 -7.3590 21 6 4.3579 0.6120 -6.0340 22 8 3.8866 1.1243 -7.2013 23 6 3.0591 2.2859 -7.1128 24 6 4.0300 1.2150 -4.8314 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6885 1.8464 0.8899 29 1 1.6885 1.8463 -0.8901 30 1 3.8507 0.5686 0.8427 31 1 3.9784 2.1765 0.0902 32 1 6.0252 -1.1740 1.3181 33 1 5.7087 -0.8625 -2.7364 34 1 6.2883 -1.9128 -4.8818 35 1 6.4405 -0.7270 -7.7481 36 1 5.6710 -2.2371 -7.2041 37 1 4.7139 -1.0133 -8.0729 38 1 2.7524 2.5906 -8.1134 39 1 2.1763 2.0584 -6.5153 40 1 3.6177 3.0950 -6.6424 41 1 3.3995 2.0919 -4.8192 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000318928392.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:53 Heat of formation + Delta-G solvation = -101.920936 kcal Electronic energy + Delta-G solvation = -24329.612077 eV Core-core repulsion = 20788.891920 eV Total energy + Delta-G solvation = -3540.720157 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.42359 -40.33519 -38.66964 -37.95939 -36.69317 -33.78626 -33.56784 -31.33303 -30.75319 -28.47687 -27.91447 -27.28543 -26.54776 -24.13090 -22.98742 -22.61595 -21.15150 -19.74679 -18.35712 -17.46336 -17.34601 -17.04844 -16.79040 -16.65333 -16.33408 -16.11555 -16.03532 -15.68572 -15.15235 -14.92626 -14.49105 -14.31263 -14.26730 -13.66625 -13.37601 -13.16760 -12.98969 -12.88211 -12.83407 -12.79924 -12.57789 -12.52263 -12.16358 -12.08655 -11.99764 -11.94372 -11.75812 -11.01020 -10.57855 -10.42492 -9.74237 -9.39876 -8.99119 -8.27142 -6.01117 0.09686 0.55843 1.44994 1.50639 1.61858 2.03368 2.32426 2.40325 2.79834 2.92610 2.97810 3.23230 3.86564 3.97089 4.19532 4.21405 4.29663 4.35452 4.40008 4.43840 4.47667 4.51969 4.56191 4.59026 4.67241 4.72179 4.74037 4.81851 4.87330 4.93384 4.98274 5.26584 5.34044 5.40763 5.50310 5.64450 5.71870 5.89217 5.99768 6.36715 6.42690 6.44575 7.12914 7.51614 7.95181 8.77511 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.013736 B = 0.006151 C = 0.004963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.966459 B = 4550.975168 C = 5640.166439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.064 3.936 4 C 0.116 3.884 5 N -0.425 5.425 6 C -0.327 4.327 7 H 0.088 0.912 8 C 0.012 3.988 9 N -0.894 5.894 10 Si 0.973 3.027 11 H -0.263 1.263 12 H -0.283 1.283 13 H -0.267 1.267 14 C 0.493 3.507 15 O -0.638 6.638 16 C -0.093 4.093 17 C -0.109 4.109 18 C -0.099 4.099 19 C -0.108 4.108 20 C -0.097 4.097 21 C 0.103 3.897 22 O -0.319 6.319 23 C 0.021 3.979 24 C -0.173 4.173 25 H 0.094 0.906 26 H 0.054 0.946 27 H 0.037 0.963 28 H 0.071 0.929 29 H 0.029 0.971 30 H 0.093 0.907 31 H 0.059 0.941 32 H 0.272 0.728 33 H 0.141 0.859 34 H 0.158 0.842 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.132 0.868 39 H 0.051 0.949 40 H 0.050 0.950 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.747 -2.054 -9.849 11.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C -0.013 4.013 4 C -0.007 4.007 5 N -0.140 5.140 6 C -0.455 4.455 7 H 0.106 0.894 8 C -0.191 4.191 9 N -0.531 5.531 10 Si 0.797 3.203 11 H -0.188 1.188 12 H -0.208 1.208 13 H -0.192 1.192 14 C 0.284 3.716 15 O -0.528 6.528 16 C -0.096 4.096 17 C -0.128 4.128 18 C -0.117 4.117 19 C -0.109 4.109 20 C -0.153 4.153 21 C 0.058 3.942 22 O -0.233 6.233 23 C -0.074 4.074 24 C -0.193 4.193 25 H 0.113 0.887 26 H 0.072 0.928 27 H 0.056 0.944 28 H 0.089 0.911 29 H 0.047 0.953 30 H 0.111 0.889 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.158 0.842 34 H 0.176 0.824 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.150 0.850 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.565 -1.745 -9.775 10.929 hybrid contribution -0.438 0.134 0.983 1.085 sum -5.003 -1.611 -8.792 10.243 Atomic orbital electron populations 1.22895 0.80547 1.03419 1.00261 1.88060 1.20550 1.27654 1.95310 1.22815 0.94223 0.84738 0.99557 1.21375 0.91531 0.97871 0.89948 1.43341 1.55347 1.07549 1.07763 1.19428 1.35745 0.81937 1.08374 0.89408 1.26062 0.93388 1.03699 0.95932 1.69977 1.28373 1.38308 1.16469 0.85236 0.79179 0.78275 0.77622 1.18780 1.20843 1.19187 1.18943 0.80392 0.85925 0.86328 1.90542 1.59676 1.15407 1.87152 1.19709 1.00330 0.97169 0.92406 1.21956 0.96915 0.93949 0.99946 1.21176 0.99726 1.00762 0.90037 1.19765 0.98589 0.94732 0.97810 1.20643 1.02222 1.00602 0.91845 1.18683 0.96572 0.94688 0.84248 1.85990 1.64960 1.44950 1.27438 1.23264 0.93230 0.85439 1.05456 1.21201 1.04714 1.02016 0.91392 0.88714 0.92761 0.94420 0.91064 0.95272 0.88914 0.92286 0.91813 0.84161 0.82413 0.90328 0.89755 0.91179 0.85021 0.93047 0.93108 0.85874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 11.01 113.37 1.25 2.00 16 2 O -0.40 -16.72 10.40 -148.98 -1.55 -18.27 16 3 C 0.06 2.69 6.25 71.98 0.45 3.14 16 4 C 0.12 5.76 5.32 86.38 0.46 6.22 16 5 N -0.42 -22.31 2.44 -638.92 -1.56 -23.87 16 6 C -0.33 -16.77 5.83 84.10 0.49 -16.28 16 7 H 0.09 4.48 6.47 -2.91 -0.02 4.46 16 8 C 0.01 0.61 4.93 84.96 0.42 1.03 16 9 N -0.89 -47.44 11.64 21.68 0.25 -47.19 16 10 Si 0.97 39.90 29.58 68.60 2.03 41.93 16 11 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 12 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 13 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 14 C 0.49 26.19 7.34 86.75 0.64 26.82 16 15 O -0.64 -36.29 16.46 -3.99 -0.07 -36.35 16 16 C -0.09 -4.33 5.46 -20.10 -0.11 -4.44 16 17 C -0.11 -4.59 7.79 22.55 0.18 -4.42 16 18 C -0.10 -3.31 9.67 22.22 0.21 -3.09 16 19 C -0.11 -3.38 5.90 -19.71 -0.12 -3.49 16 20 C -0.10 -2.17 9.78 71.24 0.70 -1.47 16 21 C 0.10 3.56 6.65 22.47 0.15 3.71 16 22 O -0.32 -9.38 9.52 -92.51 -0.88 -10.26 16 23 C 0.02 0.47 9.81 113.37 1.11 1.59 16 24 C -0.17 -7.04 8.60 22.64 0.19 -6.85 16 25 H 0.09 2.52 8.14 -2.38 -0.02 2.50 16 26 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.09 4.86 5.83 -2.39 -0.01 4.85 16 31 H 0.06 3.00 7.51 -2.39 -0.02 2.98 16 32 H 0.27 13.62 8.31 -92.70 -0.77 12.85 16 33 H 0.14 6.49 5.65 -2.91 -0.02 6.48 16 34 H 0.16 4.14 8.06 -2.91 -0.02 4.12 16 35 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.08 1.55 8.09 -2.38 -0.02 1.53 16 37 H 0.07 1.54 7.52 -2.39 -0.02 1.52 16 38 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.05 1.20 7.66 -2.39 -0.02 1.19 16 40 H 0.05 1.22 7.66 -2.39 -0.02 1.20 16 41 H 0.12 4.93 6.24 -2.91 -0.02 4.91 16 Total: -1.00 -67.01 341.69 5.28 -61.73 By element: Atomic # 1 Polarization: 26.77 SS G_CDS: 1.03 Total: 27.80 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: 6.02 Total: 4.48 kcal Atomic # 7 Polarization: -69.75 SS G_CDS: -1.31 Total: -71.06 kcal Atomic # 8 Polarization: -62.39 SS G_CDS: -2.50 Total: -64.89 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 2.03 Total: 41.93 kcal Total: -67.01 5.28 -61.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000318928392.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.189 kcal (2) G-P(sol) polarization free energy of solvation -67.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds