Wall clock time and date at job start Tue Mar 31 2020 06:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34512 * 125.78495 * 2 1 4 4 C 1.41386 * 106.83806 * 180.02562 * 3 2 1 5 5 C 1.34520 * 106.84123 * 359.97438 * 4 3 2 6 6 C 1.50694 * 125.78888 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.71119 * 5.56923 * 6 5 4 8 8 C 1.53719 * 109.74487 * 126.33389 * 6 5 4 9 9 O 1.42960 * 109.14875 * 172.16356 * 8 6 5 10 10 C 1.42963 * 114.16855 * 297.29399 * 9 8 6 11 11 C 1.53292 * 109.22609 * 62.57645 * 10 9 8 12 12 N 1.47146 * 109.68454 * 245.02594 * 6 5 4 13 13 C 1.34784 * 120.98246 * 9.77013 * 12 6 5 14 14 O 1.21286 * 119.99291 * 355.32936 * 13 12 6 15 15 C 1.50694 * 120.00106 * 175.05151 * 13 12 6 16 16 C 1.53002 * 109.46841 * 179.97438 * 15 13 12 17 17 C 1.50700 * 109.47172 * 180.02562 * 16 15 13 18 18 H 1.08009 * 119.99939 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00352 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00180 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 119.99729 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.46667 * 90.00639 * 21 19 17 23 23 H 1.48505 * 109.47167 * 210.00390 * 21 19 17 24 24 H 1.48491 * 109.47268 * 330.00561 * 21 19 17 25 25 O 1.34302 * 108.42019 * 0.26375 * 5 4 3 26 26 H 1.09004 * 109.46743 * 90.00489 * 1 2 3 27 27 H 1.09002 * 109.47127 * 210.00108 * 1 2 3 28 28 H 1.08995 * 109.47497 * 330.00570 * 1 2 3 29 29 H 1.07997 * 126.58835 * 0.02562 * 3 2 1 30 30 H 1.07998 * 126.58362 * 179.97438 * 4 3 2 31 31 H 1.08999 * 109.65272 * 52.19915 * 8 6 5 32 32 H 1.09003 * 109.48554 * 292.02716 * 8 6 5 33 33 H 1.09005 * 109.51134 * 302.65617 * 10 9 8 34 34 H 1.09000 * 109.55693 * 182.53143 * 10 9 8 35 35 H 1.08999 * 109.68393 * 187.97948 * 11 10 9 36 36 H 1.09002 * 109.68279 * 67.42366 * 11 10 9 37 37 H 1.08996 * 109.47042 * 299.99879 * 15 13 12 38 38 H 1.09003 * 109.47106 * 60.00539 * 15 13 12 39 39 H 1.09004 * 109.47083 * 299.99512 * 16 15 13 40 40 H 1.08998 * 109.47458 * 60.00199 * 16 15 13 41 41 H 0.97000 * 119.99855 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6308 0.6321 -0.0006 5 6 3.5814 -0.7122 -0.0004 6 6 4.7706 -1.6378 -0.0014 7 1 5.6881 -1.0576 0.0973 8 6 4.6550 -2.6330 1.1644 9 8 5.6864 -3.6159 1.0459 10 6 5.6005 -4.4148 -0.1365 11 6 5.7606 -3.5144 -1.3668 12 7 4.8012 -2.4040 -1.2572 13 6 3.9788 -2.0943 -2.2792 14 8 3.1410 -1.2282 -2.1421 15 6 4.1046 -2.8198 -3.5940 16 6 3.0609 -2.2820 -4.5750 17 6 3.1862 -3.0080 -5.8897 18 1 3.9357 -3.7758 -6.0133 19 6 2.3449 -2.6912 -6.9351 20 7 2.4539 -3.3251 -8.0822 21 14 1.0491 -1.3627 -6.7215 22 1 1.6200 -0.0478 -7.1091 23 1 -0.1202 -1.6684 -7.5844 24 1 0.6176 -1.3159 -5.3014 25 8 2.2925 -1.0894 -0.0055 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5137 29 1 1.9665 2.1204 0.0004 30 1 4.5212 1.2433 -0.0012 31 1 3.6812 -3.1217 1.1340 32 1 4.7660 -2.1008 2.1092 33 1 4.6301 -4.9100 -0.1716 34 1 6.3917 -5.1645 -0.1286 35 1 5.5563 -4.0882 -2.2708 36 1 6.7761 -3.1200 -1.4034 37 1 5.1028 -2.6617 -4.0021 38 1 3.9405 -3.8860 -3.4378 39 1 2.0627 -2.4406 -4.1666 40 1 3.2245 -1.2158 -4.7313 41 1 1.8617 -3.1025 -8.8175 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330885366.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:54 Heat of formation + Delta-G solvation = -55.664677 kcal Electronic energy + Delta-G solvation = -24568.404511 eV Core-core repulsion = 21029.690176 eV Total energy + Delta-G solvation = -3538.714335 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.33820 -40.14858 -38.24298 -34.81683 -33.77839 -32.91063 -32.80737 -31.19850 -30.72971 -28.31041 -26.15278 -26.05612 -23.70696 -22.47064 -21.43495 -20.94663 -19.92375 -18.84719 -17.52050 -16.79108 -16.52149 -16.13266 -15.89001 -15.60087 -15.33281 -14.93879 -14.83021 -14.13065 -13.84466 -13.65097 -13.44964 -13.02790 -12.84073 -12.60021 -12.48903 -12.41378 -12.35001 -12.10592 -11.73023 -11.53261 -11.36748 -11.02964 -10.96825 -10.36558 -10.16673 -10.11000 -9.83721 -9.63169 -9.31555 -9.20903 -8.60035 -8.53183 -7.66694 -6.06200 -4.05045 1.98460 2.78726 2.98474 3.07583 3.24129 3.35097 3.41608 3.52381 3.56803 4.40183 4.47948 4.58852 4.75737 4.82645 4.98855 5.01578 5.13873 5.24137 5.29384 5.32464 5.35128 5.40630 5.53967 5.55934 5.56638 5.69461 5.81514 5.96545 6.01228 6.08624 6.18952 6.33545 6.46532 6.61328 6.80575 6.87355 7.32072 7.39087 7.44953 7.55122 7.75543 8.43944 8.54038 8.96248 9.56915 11.06591 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.013720 B = 0.005809 C = 0.004350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.331849 B = 4818.965132 C = 6435.209134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.004 4.004 3 C -0.211 4.211 4 C -0.210 4.210 5 C 0.025 3.975 6 C 0.193 3.807 7 H 0.106 0.894 8 C 0.055 3.945 9 O -0.377 6.377 10 C 0.044 3.956 11 C 0.075 3.925 12 N -0.629 5.629 13 C 0.510 3.490 14 O -0.502 6.502 15 C -0.117 4.117 16 C 0.004 3.996 17 C -0.525 4.525 18 H 0.072 0.928 19 C 0.070 3.930 20 N -0.903 5.903 21 Si 0.877 3.123 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.262 1.262 25 O -0.159 6.159 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.138 0.862 30 H 0.137 0.863 31 H 0.062 0.938 32 H 0.108 0.892 33 H 0.059 0.941 34 H 0.109 0.891 35 H 0.105 0.895 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.023 0.977 40 H 0.018 0.982 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.403 2.369 20.564 21.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.055 4.055 3 C -0.230 4.230 4 C -0.230 4.230 5 C -0.026 4.026 6 C 0.089 3.911 7 H 0.123 0.877 8 C -0.023 4.023 9 O -0.295 6.295 10 C -0.033 4.033 11 C -0.048 4.048 12 N -0.367 5.367 13 C 0.301 3.699 14 O -0.376 6.376 15 C -0.157 4.157 16 C -0.034 4.034 17 C -0.563 4.563 18 H 0.091 0.909 19 C -0.131 4.131 20 N -0.542 5.542 21 Si 0.704 3.296 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.186 1.186 25 O -0.055 6.055 26 H 0.098 0.902 27 H 0.089 0.911 28 H 0.101 0.899 29 H 0.156 0.844 30 H 0.155 0.845 31 H 0.081 0.919 32 H 0.126 0.874 33 H 0.077 0.923 34 H 0.127 0.873 35 H 0.123 0.877 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.041 0.959 40 H 0.037 0.963 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.890 2.496 20.560 21.073 hybrid contribution -0.647 0.924 -0.474 1.224 sum 3.243 3.420 20.086 20.631 Atomic orbital electron populations 1.20239 0.85922 1.03117 1.03496 1.22128 0.93530 0.84320 1.05478 1.21284 0.92645 0.98753 1.10338 1.21183 0.97910 0.93239 1.10655 1.21234 0.82922 0.93449 1.04954 1.20318 0.93533 0.91410 0.85811 0.87676 1.23088 0.91871 0.89568 0.97733 1.87958 1.50865 1.48866 1.41843 1.23063 1.02967 0.93004 0.84311 1.22462 0.93402 0.88624 1.00305 1.48566 1.39934 1.34025 1.14186 1.21665 0.79318 0.83390 0.85554 1.90672 1.34075 1.32176 1.80711 1.21689 1.03345 1.00002 0.90648 1.19357 0.93821 0.96566 0.93654 1.21090 1.18990 1.21300 0.94915 0.90942 1.24953 0.97106 0.96068 0.94985 1.69907 1.39115 1.42005 1.03124 0.86806 0.81577 0.82397 0.78839 1.20255 1.21402 1.18612 1.83898 1.15840 1.34797 1.70959 0.90158 0.91108 0.89910 0.84378 0.84517 0.91927 0.87427 0.92286 0.87300 0.87661 0.90415 0.89557 0.89714 0.95911 0.96327 0.92689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.86 10.42 36.01 0.38 -0.49 16 2 C 0.00 -0.06 7.04 -35.62 -0.25 -0.31 16 3 C -0.21 -3.24 10.81 -39.70 -0.43 -3.66 16 4 C -0.21 -3.23 10.60 -39.70 -0.42 -3.66 16 5 C 0.03 0.40 3.55 -35.63 -0.13 0.27 16 6 C 0.19 2.54 3.57 -68.36 -0.24 2.30 16 7 H 0.11 1.22 8.11 -51.93 -0.42 0.80 16 8 C 0.06 0.62 6.29 37.53 0.24 0.85 16 9 O -0.38 -4.18 10.74 -35.23 -0.38 -4.56 16 10 C 0.04 0.42 6.98 37.31 0.26 0.68 16 11 C 0.08 0.80 6.52 -3.53 -0.02 0.78 16 12 N -0.63 -9.07 3.01 -165.81 -0.50 -9.57 16 13 C 0.51 9.50 7.62 -10.98 -0.08 9.42 16 14 O -0.50 -11.01 11.35 -18.51 -0.21 -11.22 16 15 C -0.12 -2.28 4.08 -27.88 -0.11 -2.39 16 16 C 0.00 0.10 3.33 -27.88 -0.09 0.00 16 17 C -0.53 -14.98 9.66 -34.44 -0.33 -15.31 16 18 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 19 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 20 N -0.90 -27.93 13.96 55.43 0.77 -27.16 16 21 Si 0.88 22.70 27.47 -169.99 -4.67 18.03 16 22 H -0.28 -7.09 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 24 H -0.26 -6.77 6.54 56.52 0.37 -6.40 16 25 O -0.16 -2.78 9.03 -18.36 -0.17 -2.95 16 26 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.14 1.79 8.06 -52.49 -0.42 1.37 16 30 H 0.14 1.81 8.06 -52.49 -0.42 1.39 16 31 H 0.06 0.77 8.12 -51.93 -0.42 0.35 16 32 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.11 1.08 6.07 -51.93 -0.32 0.76 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 38 H 0.08 1.51 7.47 -51.93 -0.39 1.12 16 39 H 0.02 0.60 7.16 -51.93 -0.37 0.23 16 40 H 0.02 0.48 7.52 -51.93 -0.39 0.09 16 41 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 334.27 15.07 5.04 5.04 Total: -1.00 -35.39 334.27 -7.58 -42.97 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -6.12 Total: -1.05 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -1.34 Total: -9.54 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 0.27 Total: -36.73 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.75 Total: -18.72 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -4.67 Total: 18.03 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.39 -7.58 -42.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330885366.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.698 kcal (2) G-P(sol) polarization free energy of solvation -35.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds