Wall clock time and date at job start Tue Mar 31 2020 06:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34512 * 125.78495 * 2 1 4 4 C 1.41386 * 106.83806 * 180.02562 * 3 2 1 5 5 C 1.34520 * 106.84123 * 359.97438 * 4 3 2 6 6 C 1.50694 * 125.78888 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.71119 * 5.56923 * 6 5 4 8 8 C 1.53719 * 109.74487 * 126.33389 * 6 5 4 9 9 O 1.42960 * 109.14875 * 172.16356 * 8 6 5 10 10 C 1.42963 * 114.16855 * 297.29399 * 9 8 6 11 11 C 1.53292 * 109.22609 * 62.57645 * 10 9 8 12 12 N 1.47146 * 109.68454 * 245.02594 * 6 5 4 13 13 C 1.34784 * 120.98246 * 9.77013 * 12 6 5 14 14 O 1.21286 * 119.99291 * 355.32936 * 13 12 6 15 15 C 1.50694 * 120.00106 * 175.05151 * 13 12 6 16 16 C 1.53002 * 109.46841 * 179.97438 * 15 13 12 17 17 C 1.50700 * 109.47172 * 180.02562 * 16 15 13 18 18 H 1.08009 * 119.99939 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00352 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00180 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 119.99729 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.46667 * 90.00639 * 21 19 17 23 23 H 1.48505 * 109.47167 * 210.00390 * 21 19 17 24 24 H 1.48491 * 109.47268 * 330.00561 * 21 19 17 25 25 O 1.34302 * 108.42019 * 0.26375 * 5 4 3 26 26 H 1.09004 * 109.46743 * 90.00489 * 1 2 3 27 27 H 1.09002 * 109.47127 * 210.00108 * 1 2 3 28 28 H 1.08995 * 109.47497 * 330.00570 * 1 2 3 29 29 H 1.07997 * 126.58835 * 0.02562 * 3 2 1 30 30 H 1.07998 * 126.58362 * 179.97438 * 4 3 2 31 31 H 1.08999 * 109.65272 * 52.19915 * 8 6 5 32 32 H 1.09003 * 109.48554 * 292.02716 * 8 6 5 33 33 H 1.09005 * 109.51134 * 302.65617 * 10 9 8 34 34 H 1.09000 * 109.55693 * 182.53143 * 10 9 8 35 35 H 1.08999 * 109.68393 * 187.97948 * 11 10 9 36 36 H 1.09002 * 109.68279 * 67.42366 * 11 10 9 37 37 H 1.08996 * 109.47042 * 299.99879 * 15 13 12 38 38 H 1.09003 * 109.47106 * 60.00539 * 15 13 12 39 39 H 1.09004 * 109.47083 * 299.99512 * 16 15 13 40 40 H 1.08998 * 109.47458 * 60.00199 * 16 15 13 41 41 H 0.97000 * 119.99855 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6308 0.6321 -0.0006 5 6 3.5814 -0.7122 -0.0004 6 6 4.7706 -1.6378 -0.0014 7 1 5.6881 -1.0576 0.0973 8 6 4.6550 -2.6330 1.1644 9 8 5.6864 -3.6159 1.0459 10 6 5.6005 -4.4148 -0.1365 11 6 5.7606 -3.5144 -1.3668 12 7 4.8012 -2.4040 -1.2572 13 6 3.9788 -2.0943 -2.2792 14 8 3.1410 -1.2282 -2.1421 15 6 4.1046 -2.8198 -3.5940 16 6 3.0609 -2.2820 -4.5750 17 6 3.1862 -3.0080 -5.8897 18 1 3.9357 -3.7758 -6.0133 19 6 2.3449 -2.6912 -6.9351 20 7 2.4539 -3.3251 -8.0822 21 14 1.0491 -1.3627 -6.7215 22 1 1.6200 -0.0478 -7.1091 23 1 -0.1202 -1.6684 -7.5844 24 1 0.6176 -1.3159 -5.3014 25 8 2.2925 -1.0894 -0.0055 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5137 29 1 1.9665 2.1204 0.0004 30 1 4.5212 1.2433 -0.0012 31 1 3.6812 -3.1217 1.1340 32 1 4.7660 -2.1008 2.1092 33 1 4.6301 -4.9100 -0.1716 34 1 6.3917 -5.1645 -0.1286 35 1 5.5563 -4.0882 -2.2708 36 1 6.7761 -3.1200 -1.4034 37 1 5.1028 -2.6617 -4.0021 38 1 3.9405 -3.8860 -3.4378 39 1 2.0627 -2.4406 -4.1666 40 1 3.2245 -1.2158 -4.7313 41 1 1.8617 -3.1025 -8.8175 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330885366.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:53 Heat of formation + Delta-G solvation = -78.279504 kcal Electronic energy + Delta-G solvation = -24569.385163 eV Core-core repulsion = 21029.690176 eV Total energy + Delta-G solvation = -3539.694988 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.48714 -41.30280 -39.39596 -35.96567 -35.65185 -34.23993 -33.95183 -33.04793 -31.70542 -29.48571 -27.81186 -27.12843 -24.75240 -23.80577 -22.69490 -22.35961 -21.16719 -20.14592 -19.23404 -18.18508 -17.81603 -17.17876 -16.90444 -16.78771 -16.55759 -16.34010 -15.90742 -15.84912 -15.14935 -15.00259 -14.70625 -14.60980 -14.05025 -13.93297 -13.78345 -13.61400 -13.48264 -13.27637 -13.04133 -12.93935 -12.67601 -12.41243 -12.11460 -12.02457 -11.86449 -11.81909 -11.43686 -11.29865 -10.98593 -10.81732 -10.55967 -9.69493 -8.84361 -8.35040 -6.37648 0.83837 1.28497 1.30567 1.45361 1.59478 1.64983 1.93676 2.17712 2.30860 2.74873 3.00675 3.44499 3.52158 3.84831 3.88482 3.99942 4.10683 4.17514 4.23401 4.26040 4.29864 4.40337 4.48998 4.55823 4.62129 4.65410 4.78109 4.85086 4.87416 4.94792 4.96886 5.09702 5.23889 5.31665 5.38004 5.40688 5.56460 5.77530 5.98700 6.17960 6.23881 6.39175 6.68295 7.14335 7.27804 8.80554 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.013720 B = 0.005809 C = 0.004350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.331849 B = 4818.965132 C = 6435.209134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.027 4.027 3 C -0.224 4.224 4 C -0.224 4.224 5 C 0.014 3.986 6 C 0.189 3.811 7 H 0.126 0.874 8 C 0.064 3.936 9 O -0.380 6.380 10 C 0.045 3.955 11 C 0.068 3.932 12 N -0.621 5.621 13 C 0.509 3.491 14 O -0.543 6.543 15 C -0.110 4.110 16 C 0.012 3.988 17 C -0.528 4.528 18 H 0.053 0.947 19 C 0.017 3.983 20 N -0.941 5.941 21 Si 0.935 3.065 22 H -0.270 1.270 23 H -0.276 1.276 24 H -0.265 1.265 25 O -0.181 6.181 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.112 0.888 29 H 0.157 0.843 30 H 0.154 0.846 31 H 0.048 0.952 32 H 0.130 0.870 33 H 0.052 0.948 34 H 0.142 0.858 35 H 0.109 0.891 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.005 0.995 40 H 0.004 0.996 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.222 2.651 22.199 22.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.078 4.078 3 C -0.243 4.243 4 C -0.244 4.244 5 C -0.037 4.037 6 C 0.086 3.914 7 H 0.144 0.856 8 C -0.014 4.014 9 O -0.298 6.298 10 C -0.032 4.032 11 C -0.054 4.054 12 N -0.358 5.358 13 C 0.299 3.701 14 O -0.420 6.420 15 C -0.149 4.149 16 C -0.026 4.026 17 C -0.566 4.566 18 H 0.071 0.929 19 C -0.181 4.181 20 N -0.582 5.582 21 Si 0.760 3.240 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.190 1.190 25 O -0.078 6.078 26 H 0.087 0.913 27 H 0.097 0.903 28 H 0.130 0.870 29 H 0.175 0.825 30 H 0.172 0.828 31 H 0.066 0.934 32 H 0.147 0.853 33 H 0.070 0.930 34 H 0.159 0.841 35 H 0.128 0.872 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.024 0.976 40 H 0.023 0.977 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.749 2.752 22.222 22.890 hybrid contribution -0.816 0.779 -0.966 1.485 sum 3.933 3.531 21.256 21.903 Atomic orbital electron populations 1.20366 0.83898 1.05035 1.03292 1.22845 0.95054 0.84271 1.05596 1.21648 0.92826 0.99657 1.10120 1.21539 0.98677 0.93597 1.10567 1.21711 0.83054 0.94223 1.04715 1.20643 0.93345 0.91761 0.85622 0.85643 1.23036 0.91336 0.89209 0.97789 1.87969 1.50578 1.48780 1.42442 1.23219 1.03953 0.92971 0.83099 1.22793 0.93450 0.87843 1.01281 1.48506 1.39200 1.34481 1.13570 1.21345 0.79699 0.82972 0.86073 1.90667 1.35914 1.33861 1.81585 1.21488 1.02207 1.00744 0.90469 1.19157 0.94776 0.95414 0.93284 1.21400 1.18029 1.20722 0.96428 0.92917 1.25740 0.99275 0.98207 0.94853 1.70010 1.40442 1.43687 1.04014 0.85874 0.79501 0.79991 0.78588 1.19567 1.20164 1.18955 1.83875 1.16780 1.35838 1.71353 0.91251 0.90259 0.86993 0.82545 0.82838 0.93387 0.85270 0.92953 0.84071 0.87249 0.88232 0.88024 0.88180 0.97623 0.97720 0.92329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.64 10.42 71.24 0.74 -0.90 16 2 C -0.03 -0.87 7.04 24.83 0.17 -0.69 16 3 C -0.22 -6.71 10.81 22.19 0.24 -6.47 16 4 C -0.22 -6.71 10.60 22.19 0.24 -6.48 16 5 C 0.01 0.42 3.55 24.83 0.09 0.51 16 6 C 0.19 4.63 3.57 44.36 0.16 4.79 16 7 H 0.13 2.56 8.11 -2.39 -0.02 2.54 16 8 C 0.06 1.30 6.29 72.22 0.45 1.75 16 9 O -0.38 -7.27 10.74 -148.98 -1.60 -8.87 16 10 C 0.04 0.71 6.98 72.08 0.50 1.21 16 11 C 0.07 1.25 6.52 86.35 0.56 1.82 16 12 N -0.62 -16.80 3.01 -796.88 -2.40 -19.20 16 13 C 0.51 18.56 7.62 87.65 0.67 19.22 16 14 O -0.54 -23.82 11.35 19.96 0.23 -23.59 16 15 C -0.11 -4.17 4.08 29.85 0.12 -4.05 16 16 C 0.01 0.58 3.33 29.85 0.10 0.68 16 17 C -0.53 -30.41 9.66 25.60 0.25 -30.16 16 18 H 0.05 3.17 7.99 -2.91 -0.02 3.15 16 19 C 0.02 1.03 5.47 84.65 0.46 1.49 16 20 N -0.94 -58.78 13.96 21.45 0.30 -58.48 16 21 Si 0.94 47.20 27.47 68.60 1.88 49.08 16 22 H -0.27 -13.27 7.11 99.48 0.71 -12.57 16 23 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 24 H -0.27 -13.42 6.54 99.48 0.65 -12.76 16 25 O -0.18 -6.37 9.03 20.49 0.19 -6.19 16 26 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.16 3.88 8.06 -2.91 -0.02 3.86 16 30 H 0.15 3.86 8.06 -2.91 -0.02 3.83 16 31 H 0.05 1.12 8.12 -2.39 -0.02 1.10 16 32 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.14 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.11 1.95 6.07 -2.39 -0.01 1.94 16 36 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.10 3.53 8.14 -2.39 -0.02 3.51 16 38 H 0.10 3.46 7.47 -2.39 -0.02 3.44 16 39 H 0.01 0.29 7.16 -2.38 -0.02 0.27 16 40 H 0.00 0.23 7.52 -2.39 -0.02 0.22 16 41 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -77.03 334.27 4.31 -72.71 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 0.96 Total: 11.80 kcal Atomic # 6 Polarization: -22.03 SS G_CDS: 4.76 Total: -17.27 kcal Atomic # 7 Polarization: -75.58 SS G_CDS: -2.10 Total: -77.68 kcal Atomic # 8 Polarization: -37.46 SS G_CDS: -1.19 Total: -38.65 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 1.88 Total: 49.08 kcal Total: -77.03 4.31 -72.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330885366.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.565 kcal (2) G-P(sol) polarization free energy of solvation -77.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds