Wall clock time and date at job start Tue Mar 31 2020 06:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34511 * 125.78864 * 2 1 4 4 C 1.41379 * 106.84182 * 180.26182 * 3 2 1 5 5 C 1.34517 * 106.83932 * 359.97438 * 4 3 2 6 6 C 1.50698 * 125.78624 * 180.02562 * 5 4 3 7 7 H 1.08999 * 109.68447 * 355.39518 * 6 5 4 8 8 C 1.53293 * 109.68449 * 234.86945 * 6 5 4 9 9 O 1.42959 * 109.22810 * 187.97679 * 8 6 5 10 10 C 1.42969 * 114.16322 * 62.58339 * 9 8 6 11 11 C 1.53301 * 109.22179 * 297.41905 * 10 9 8 12 12 N 1.47149 * 108.38048 * 52.30641 * 11 10 9 13 13 C 1.34775 * 120.98497 * 129.48826 * 12 11 10 14 14 O 1.21275 * 120.00347 * 184.27498 * 13 12 11 15 15 C 1.50700 * 119.99776 * 4.27495 * 13 12 11 16 16 C 1.53001 * 109.47260 * 179.97438 * 15 13 12 17 17 C 1.50700 * 109.47260 * 180.02562 * 16 15 13 18 18 H 1.08003 * 119.99863 * 359.97438 * 17 16 15 19 19 C 1.37873 * 120.00166 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00371 * 180.02562 * 19 17 16 21 21 Si 1.86806 * 119.99910 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.46714 * 90.00449 * 21 19 17 23 23 H 1.48495 * 109.47042 * 210.00157 * 21 19 17 24 24 H 1.48491 * 109.46914 * 330.00402 * 21 19 17 25 25 O 1.34304 * 108.42409 * 0.02562 * 5 4 3 26 26 H 1.09004 * 109.47129 * 179.72221 * 1 2 3 27 27 H 1.09000 * 109.47273 * 299.71368 * 1 2 3 28 28 H 1.08997 * 109.47154 * 59.71466 * 1 2 3 29 29 H 1.08002 * 126.58183 * 0.26640 * 3 2 1 30 30 H 1.07995 * 126.58174 * 179.97438 * 4 3 2 31 31 H 1.09001 * 109.51595 * 307.90441 * 8 6 5 32 32 H 1.09004 * 109.51145 * 68.05176 * 8 6 5 33 33 H 1.08995 * 109.51221 * 57.34501 * 10 9 8 34 34 H 1.08997 * 109.51353 * 177.49898 * 10 9 8 35 35 H 1.09004 * 109.67934 * 172.02547 * 11 10 9 36 36 H 1.08994 * 109.67906 * 292.54211 * 11 10 9 37 37 H 1.09000 * 109.47115 * 300.00224 * 15 13 12 38 38 H 1.09003 * 109.47187 * 60.00099 * 15 13 12 39 39 H 1.09000 * 109.47397 * 300.00244 * 16 15 13 40 40 H 1.08998 * 109.46527 * 60.00458 * 16 15 13 41 41 H 0.96997 * 120.00499 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6321 -0.0062 5 6 3.5813 -0.7122 -0.0090 6 6 4.7706 -1.6377 -0.0151 7 1 5.6883 -1.0558 -0.0994 8 6 4.6639 -2.6077 -1.1974 9 8 5.6911 -3.5961 -1.0896 10 6 5.5939 -4.4162 0.0775 11 6 5.7483 -3.5389 1.3251 12 7 4.7935 -2.4234 1.2290 13 6 3.9648 -2.1295 2.2504 14 8 3.1321 -1.2568 2.1239 15 6 4.0728 -2.8851 3.5497 16 6 3.0260 -2.3596 4.5340 17 6 3.1345 -3.1149 5.8336 18 1 3.8757 -3.8923 5.9461 19 6 2.2869 -2.8141 6.8786 20 7 2.3818 -3.4729 8.0128 21 14 1.0044 -1.4699 6.6837 22 1 -0.2539 -2.0587 6.1591 23 1 0.7437 -0.8396 8.0028 24 1 1.5039 -0.4431 5.7345 25 8 2.2924 -1.0895 -0.0055 26 1 -0.3633 -1.0277 -0.0050 27 1 -0.3634 0.5094 0.8925 28 1 -0.3633 0.5182 -0.8874 29 1 1.9665 2.1204 0.0040 30 1 4.5211 1.2433 -0.0082 31 1 3.6882 -3.0935 -1.1829 32 1 4.7840 -2.0582 -2.1311 33 1 4.6217 -4.9085 0.0966 34 1 6.3832 -5.1678 0.0611 35 1 5.5356 -4.1284 2.2170 36 1 6.7650 -3.1494 1.3764 37 1 3.9012 -3.9461 3.3683 38 1 5.0688 -2.7448 3.9699 39 1 3.1980 -1.2986 4.7154 40 1 2.0300 -2.4996 4.1141 41 1 1.7858 -3.2610 8.7481 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330885367.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:55 Heat of formation + Delta-G solvation = -78.198202 kcal Electronic energy + Delta-G solvation = -24572.792458 eV Core-core repulsion = 21033.100996 eV Total energy + Delta-G solvation = -3539.691462 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.48941 -41.30850 -39.40266 -35.96578 -35.65188 -34.25343 -33.94753 -33.05123 -31.71215 -29.48963 -27.81721 -27.12903 -24.75302 -23.80565 -22.69181 -22.35461 -21.16675 -20.14513 -19.23496 -18.18750 -17.82234 -17.18583 -16.90052 -16.77751 -16.55398 -16.35844 -15.89456 -15.84949 -15.16023 -15.00642 -14.69613 -14.61515 -14.05089 -13.94278 -13.75449 -13.61168 -13.50043 -13.27344 -13.03041 -12.93494 -12.69662 -12.41178 -12.11647 -12.02776 -11.87867 -11.80819 -11.43487 -11.29935 -10.97979 -10.81646 -10.55929 -9.69698 -8.84079 -8.34933 -6.37569 0.84187 1.28308 1.30730 1.45597 1.59347 1.65036 1.93496 2.17849 2.30950 2.74897 3.00750 3.44832 3.53060 3.84720 3.88535 3.99829 4.10647 4.17507 4.23104 4.26208 4.29992 4.40390 4.47384 4.55202 4.62049 4.67526 4.78056 4.84951 4.87437 4.95033 4.97186 5.09408 5.23745 5.32064 5.38340 5.40504 5.56557 5.77494 5.98604 6.18033 6.23924 6.39370 6.68394 7.14421 7.27894 8.80658 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.013739 B = 0.005811 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.523636 B = 4817.253179 C = 6432.183828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.026 4.026 3 C -0.225 4.225 4 C -0.224 4.224 5 C 0.013 3.987 6 C 0.189 3.811 7 H 0.125 0.875 8 C 0.064 3.936 9 O -0.380 6.380 10 C 0.045 3.955 11 C 0.068 3.932 12 N -0.621 5.621 13 C 0.509 3.491 14 O -0.543 6.543 15 C -0.110 4.110 16 C 0.012 3.988 17 C -0.528 4.528 18 H 0.053 0.947 19 C 0.017 3.983 20 N -0.941 5.941 21 Si 0.935 3.065 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.266 1.266 25 O -0.181 6.181 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.108 0.892 29 H 0.156 0.844 30 H 0.154 0.846 31 H 0.048 0.952 32 H 0.130 0.870 33 H 0.052 0.948 34 H 0.142 0.858 35 H 0.109 0.891 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.006 0.994 40 H 0.004 0.996 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.372 3.017 -22.081 22.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.077 4.077 3 C -0.244 4.244 4 C -0.244 4.244 5 C -0.038 4.038 6 C 0.086 3.914 7 H 0.143 0.857 8 C -0.014 4.014 9 O -0.298 6.298 10 C -0.032 4.032 11 C -0.054 4.054 12 N -0.357 5.357 13 C 0.299 3.701 14 O -0.420 6.420 15 C -0.149 4.149 16 C -0.026 4.026 17 C -0.566 4.566 18 H 0.071 0.929 19 C -0.181 4.181 20 N -0.582 5.582 21 Si 0.760 3.240 22 H -0.194 1.194 23 H -0.202 1.202 24 H -0.190 1.190 25 O -0.078 6.078 26 H 0.088 0.912 27 H 0.101 0.899 28 H 0.127 0.873 29 H 0.174 0.826 30 H 0.172 0.828 31 H 0.066 0.934 32 H 0.148 0.852 33 H 0.071 0.929 34 H 0.159 0.841 35 H 0.128 0.872 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.024 0.976 40 H 0.023 0.977 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.905 3.124 -22.099 22.852 hybrid contribution -0.836 0.753 0.948 1.471 sum 4.070 3.877 -21.151 21.885 Atomic orbital electron populations 1.20368 0.83876 1.03963 1.04397 1.22846 0.95072 0.84253 1.05501 1.21622 0.92828 0.99676 1.10269 1.21538 0.98674 0.93589 1.10571 1.21703 0.83070 0.94211 1.04790 1.20556 0.93358 0.91558 0.85891 0.85712 1.22962 0.91462 0.89376 0.97582 1.87973 1.50581 1.47598 1.43616 1.23223 1.03939 0.92763 0.83318 1.22791 0.93574 0.87819 1.01195 1.48497 1.39146 1.33829 1.14263 1.21338 0.79617 0.83301 0.85827 1.90663 1.36305 1.33824 1.81213 1.21489 1.02221 1.00473 0.90724 1.19156 0.94619 0.95608 0.93246 1.21398 1.18283 1.19623 0.97271 0.92917 1.25739 0.99255 0.98195 0.94881 1.70007 1.40263 1.43214 1.04673 0.85875 0.79986 0.80462 0.77645 1.19425 1.20217 1.19035 1.83887 1.16777 1.35813 1.71307 0.91207 0.89876 0.87316 0.82599 0.82825 0.93407 0.85234 0.92926 0.84075 0.87245 0.88245 0.88152 0.88059 0.97585 0.97749 0.92327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.64 10.42 71.24 0.74 -0.90 16 2 C -0.03 -0.83 7.03 24.83 0.17 -0.66 16 3 C -0.22 -6.76 10.81 22.19 0.24 -6.52 16 4 C -0.22 -6.71 10.63 22.19 0.24 -6.47 16 5 C 0.01 0.40 3.54 24.83 0.09 0.48 16 6 C 0.19 4.64 3.55 44.22 0.16 4.80 16 7 H 0.13 2.56 8.11 -2.39 -0.02 2.54 16 8 C 0.06 1.29 6.27 72.08 0.45 1.75 16 9 O -0.38 -7.27 10.74 -148.98 -1.60 -8.87 16 10 C 0.04 0.71 6.99 72.08 0.50 1.21 16 11 C 0.07 1.25 6.53 86.36 0.56 1.82 16 12 N -0.62 -16.80 3.02 -797.67 -2.41 -19.21 16 13 C 0.51 18.56 7.62 87.66 0.67 19.23 16 14 O -0.54 -23.81 11.35 20.05 0.23 -23.58 16 15 C -0.11 -4.17 4.07 29.85 0.12 -4.05 16 16 C 0.01 0.59 3.33 29.85 0.10 0.68 16 17 C -0.53 -30.40 9.66 25.60 0.25 -30.15 16 18 H 0.05 3.17 7.99 -2.91 -0.02 3.15 16 19 C 0.02 1.03 5.47 84.65 0.46 1.49 16 20 N -0.94 -58.77 13.96 21.45 0.30 -58.47 16 21 Si 0.94 47.18 27.47 68.60 1.88 49.06 16 22 H -0.27 -13.13 7.11 99.48 0.71 -12.43 16 23 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 24 H -0.27 -13.50 6.54 99.48 0.65 -12.85 16 25 O -0.18 -6.34 9.00 20.52 0.18 -6.16 16 26 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 27 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.16 3.89 8.06 -2.91 -0.02 3.87 16 30 H 0.15 3.85 8.06 -2.91 -0.02 3.83 16 31 H 0.05 1.12 8.11 -2.39 -0.02 1.10 16 32 H 0.13 2.04 8.14 -2.38 -0.02 2.02 16 33 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.14 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.11 1.95 6.07 -2.38 -0.01 1.94 16 36 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.10 3.46 7.48 -2.39 -0.02 3.45 16 38 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 39 H 0.01 0.31 7.16 -2.39 -0.02 0.29 16 40 H 0.00 0.22 7.53 -2.39 -0.02 0.20 16 41 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -76.98 334.21 4.30 -72.68 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 0.96 Total: 11.84 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: 4.76 Total: -17.28 kcal Atomic # 7 Polarization: -75.58 SS G_CDS: -2.11 Total: -77.69 kcal Atomic # 8 Polarization: -37.42 SS G_CDS: -1.19 Total: -38.61 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 1.88 Total: 49.06 kcal Total: -76.98 4.30 -72.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330885367.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.522 kcal (2) G-P(sol) polarization free energy of solvation -76.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds