Wall clock time and date at job start Tue Mar 31 2020 06:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.33656 * 125.80390 * 2 1 4 4 C 1.34219 * 110.90841 * 180.26387 * 3 2 1 5 5 C 1.50699 * 125.44035 * 179.75809 * 4 3 2 6 6 C 1.53000 * 109.47065 * 300.00734 * 5 4 3 7 7 C 1.53008 * 109.46738 * 60.00078 * 5 4 3 8 8 C 1.34180 * 109.12410 * 359.76291 * 4 3 2 9 9 C 1.36418 * 125.80182 * 179.85310 * 2 1 3 10 10 C 1.47377 * 127.19043 * 0.02562 * 9 2 1 11 11 O 1.21618 * 120.00213 * 359.70802 * 10 9 2 12 12 N 1.34776 * 120.00385 * 179.70336 * 10 9 2 13 13 C 1.47578 * 134.49473 * 179.97438 * 12 10 9 14 14 C 1.53950 * 86.11711 * 204.66225 * 13 12 10 15 15 O 1.42905 * 113.73786 * 90.74298 * 14 13 12 16 16 C 1.50702 * 113.74361 * 221.94119 * 14 13 12 17 17 H 1.07997 * 119.99716 * 358.07712 * 16 14 13 18 18 C 1.37877 * 119.99683 * 178.07946 * 16 14 13 19 19 N 1.31519 * 119.99375 * 180.02562 * 18 16 14 20 20 Si 1.86795 * 120.00220 * 359.97438 * 18 16 14 21 21 H 1.48499 * 109.47007 * 90.00544 * 20 18 16 22 22 H 1.48500 * 109.47115 * 209.99966 * 20 18 16 23 23 H 1.48496 * 109.47096 * 330.00048 * 20 18 16 24 24 C 1.47930 * 134.49981 * 0.03791 * 12 10 9 25 25 H 1.08997 * 109.47089 * 270.14694 * 1 2 3 26 26 H 1.09000 * 109.46570 * 30.14656 * 1 2 3 27 27 H 1.09000 * 109.46755 * 150.14021 * 1 2 3 28 28 H 1.08992 * 109.47229 * 179.97438 * 5 4 3 29 29 H 1.09000 * 109.47716 * 59.99185 * 6 5 4 30 30 H 1.08998 * 109.46798 * 179.97438 * 6 5 4 31 31 H 1.09003 * 109.46725 * 299.99283 * 6 5 4 32 32 H 1.09000 * 109.46888 * 300.00108 * 7 5 4 33 33 H 1.08996 * 109.46941 * 60.00079 * 7 5 4 34 34 H 1.08998 * 109.46591 * 180.02562 * 7 5 4 35 35 H 1.08000 * 127.02382 * 179.97438 * 8 4 3 36 36 H 1.09007 * 113.76850 * 90.36997 * 13 12 10 37 37 H 1.08994 * 113.87568 * 318.97975 * 13 12 10 38 38 H 0.96696 * 114.00036 * 181.92461 * 15 14 13 39 39 H 0.97000 * 119.99411 * 179.97438 * 19 18 16 40 40 H 1.09003 * 113.86941 * 41.06551 * 24 12 10 41 41 H 1.09003 * 113.76390 * 269.57872 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0840 0.0000 4 6 3.5860 0.7390 -0.0058 5 6 4.7460 1.7009 -0.0127 6 6 4.6721 2.5800 -1.2627 7 6 4.6842 2.5833 1.2357 8 6 3.6849 -0.5992 -0.0045 9 6 2.3050 -1.1064 0.0028 10 6 1.8739 -2.5157 0.0059 11 8 0.6889 -2.7892 0.0115 12 7 2.7929 -3.5016 0.0025 13 6 2.7281 -4.9760 0.0044 14 6 4.1303 -4.9324 0.6384 15 8 4.1151 -4.9078 2.0672 16 6 5.0815 -5.9585 0.0786 17 1 4.7424 -6.6556 -0.6735 18 6 6.3845 -6.0074 0.5265 19 7 7.2147 -6.9026 0.0375 20 14 6.9711 -4.8014 1.8267 21 1 6.7476 -5.3804 3.1758 22 1 8.4194 -4.5341 1.6366 23 1 6.2127 -3.5308 1.7015 24 6 4.2717 -3.5406 -0.0036 25 1 -0.3633 0.0026 1.0276 26 1 -0.3632 0.8887 -0.5161 27 1 -0.3633 -0.8913 -0.5117 28 1 5.6816 1.1418 -0.0160 29 1 3.7364 3.1391 -1.2590 30 1 5.5109 3.2760 -1.2675 31 1 4.7162 1.9513 -2.1521 32 1 3.7485 3.1424 1.2394 33 1 4.7368 1.9571 2.1263 34 1 5.5230 3.2794 1.2305 35 1 4.5928 -1.1841 -0.0085 36 1 2.7103 -5.4162 -0.9926 37 1 1.9607 -5.3829 0.6628 38 1 4.9929 -4.8508 2.4689 39 1 8.1316 -6.9368 0.3524 40 1 4.7351 -2.8008 0.6491 41 1 4.7065 -3.5599 -1.0029 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336175584.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:31 Heat of formation + Delta-G solvation = -31.977362 kcal Electronic energy + Delta-G solvation = -24116.955038 eV Core-core repulsion = 20579.267862 eV Total energy + Delta-G solvation = -3537.687176 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.54119 -39.62182 -37.54425 -35.81426 -34.45914 -32.87284 -32.56392 -31.32391 -29.01309 -27.40719 -26.76890 -25.75106 -25.27287 -22.70881 -21.87356 -20.79627 -19.71464 -18.07970 -17.44463 -16.69981 -16.31385 -16.29512 -15.97151 -15.21332 -14.91587 -14.71213 -14.22855 -13.75299 -13.58745 -13.44727 -13.17324 -13.01957 -12.98199 -12.81170 -12.50078 -12.41508 -12.30344 -12.14094 -12.04526 -11.46057 -11.37919 -11.19424 -11.10671 -10.93338 -10.63063 -10.14842 -9.78814 -9.61179 -9.32250 -9.02927 -8.69453 -8.37719 -7.96812 -6.44019 -4.50072 1.52877 2.14266 2.74275 2.96967 2.99422 3.11866 3.42664 3.75225 4.00988 4.31948 4.63482 4.63605 4.84325 4.86175 4.89261 5.11044 5.14199 5.28232 5.37445 5.43529 5.53502 5.56657 5.56881 5.58959 5.68966 5.75448 5.91600 5.97866 5.98110 6.03946 6.09163 6.22158 6.27823 6.32288 6.40357 6.54712 6.60432 7.16070 7.19652 8.01586 8.28582 8.50190 8.60064 8.66635 9.13518 10.68185 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015500 B = 0.005359 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.047031 B = 5223.310519 C = 6498.300913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.063 3.937 3 O -0.173 6.173 4 C -0.013 4.013 5 C -0.013 4.013 6 C -0.148 4.148 7 C -0.149 4.149 8 C -0.181 4.181 9 C -0.225 4.225 10 C 0.604 3.396 11 O -0.562 6.562 12 N -0.625 5.625 13 C 0.129 3.871 14 C 0.194 3.806 15 O -0.553 6.553 16 C -0.536 4.536 17 H 0.092 0.908 18 C 0.081 3.919 19 N -0.876 5.876 20 Si 0.856 3.144 21 H -0.267 1.267 22 H -0.283 1.283 23 H -0.256 1.256 24 C 0.063 3.937 25 H 0.085 0.915 26 H 0.073 0.927 27 H 0.108 0.892 28 H 0.101 0.899 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.159 0.841 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.352 0.648 39 H 0.271 0.729 40 H 0.071 0.929 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.746 17.740 -0.339 18.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.011 3.989 3 O -0.070 6.070 4 C -0.061 4.061 5 C -0.031 4.031 6 C -0.205 4.205 7 C -0.206 4.206 8 C -0.201 4.201 9 C -0.230 4.230 10 C 0.395 3.605 11 O -0.444 6.444 12 N -0.358 5.358 13 C 0.008 3.992 14 C 0.153 3.847 15 O -0.363 6.363 16 C -0.574 4.574 17 H 0.110 0.890 18 C -0.124 4.124 19 N -0.511 5.511 20 Si 0.684 3.316 21 H -0.193 1.193 22 H -0.209 1.209 23 H -0.181 1.181 24 C -0.060 4.060 25 H 0.103 0.897 26 H 0.092 0.908 27 H 0.127 0.873 28 H 0.119 0.881 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.176 0.824 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.203 0.797 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.022 17.915 -0.438 18.611 hybrid contribution 1.356 0.409 0.755 1.605 sum -3.666 18.324 0.317 18.690 Atomic orbital electron populations 1.20545 0.83850 1.04715 1.04135 1.22698 0.93840 0.82972 0.99435 1.83624 1.16513 1.34945 1.71918 1.22131 0.82507 0.94384 1.07086 1.19783 0.92284 0.94215 0.96828 1.21865 1.02426 0.99480 0.96740 1.21871 1.02439 0.99475 0.96797 1.22957 0.97363 0.93386 1.06351 1.21165 0.93146 0.93899 1.14747 1.16793 0.84436 0.82996 0.76282 1.90688 1.16239 1.83927 1.53546 1.49924 1.07965 1.07104 1.70807 1.23283 0.97611 0.77833 1.00486 1.20565 0.93885 0.91341 0.78859 1.86475 1.32460 1.96743 1.20646 1.21234 0.94227 1.17099 1.24810 0.89034 1.24994 0.96599 0.94994 0.95856 1.69860 1.05902 1.33428 1.41956 0.87377 0.79032 0.82423 0.82750 1.19290 1.20900 1.18106 1.24790 0.78704 1.00677 1.01856 0.89662 0.90809 0.87340 0.88101 0.92160 0.91710 0.92085 0.92143 0.92120 0.91695 0.82377 0.88683 0.90475 0.79659 0.91896 0.91062 0.88717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.96 9.89 36.00 0.36 -0.60 16 2 C 0.06 0.98 7.37 -34.97 -0.26 0.73 16 3 O -0.17 -2.50 10.52 7.63 0.08 -2.42 16 4 C -0.01 -0.18 5.79 -35.74 -0.21 -0.38 16 5 C -0.01 -0.13 3.32 -91.77 -0.30 -0.43 16 6 C -0.15 -1.29 9.18 37.16 0.34 -0.95 16 7 C -0.15 -1.33 9.18 37.16 0.34 -0.99 16 8 C -0.18 -2.90 9.93 -37.45 -0.37 -3.28 16 9 C -0.23 -4.05 6.30 -103.28 -0.65 -4.70 16 10 C 0.60 12.52 8.04 -12.54 -0.10 12.42 16 11 O -0.56 -12.46 15.58 5.26 0.08 -12.38 16 12 N -0.63 -13.08 3.62 -179.31 -0.65 -13.73 16 13 C 0.13 2.74 8.23 -2.97 -0.02 2.72 16 14 C 0.19 4.44 1.05 -90.86 -0.10 4.35 16 15 O -0.55 -13.11 13.35 -35.23 -0.47 -13.58 16 16 C -0.54 -13.75 9.20 -34.44 -0.32 -14.06 16 17 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 18 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 19 N -0.88 -24.29 13.96 55.43 0.77 -23.51 16 20 Si 0.86 18.61 24.31 -169.99 -4.13 14.48 16 21 H -0.27 -5.70 7.05 56.52 0.40 -5.30 16 22 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.26 -5.17 5.16 56.52 0.29 -4.88 16 24 C 0.06 1.27 5.75 -2.79 -0.02 1.26 16 25 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.11 1.53 6.49 -51.93 -0.34 1.19 16 28 H 0.10 0.94 8.09 -51.93 -0.42 0.52 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.16 2.46 5.49 -52.49 -0.29 2.17 16 36 H 0.10 1.87 8.09 -51.92 -0.42 1.45 16 37 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 38 H 0.35 7.90 3.57 45.56 0.16 8.06 16 39 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.07 1.39 4.94 -51.93 -0.26 1.14 16 41 H 0.09 1.83 8.09 -51.93 -0.42 1.41 16 LS Contribution 333.73 15.07 5.03 5.03 Total: -1.00 -30.46 333.73 -6.15 -36.61 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -5.46 Total: 11.42 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -1.41 Total: -1.93 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: 0.13 Total: -37.24 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -0.31 Total: -28.37 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -4.13 Total: 14.48 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.46 -6.15 -36.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336175584.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.631 kcal (2) G-P(sol) polarization free energy of solvation -30.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds