Wall clock time and date at job start Tue Mar 31 2020 06:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.33656 * 125.80390 * 2 1 4 4 C 1.34219 * 110.90841 * 180.26387 * 3 2 1 5 5 C 1.50699 * 125.44035 * 179.75809 * 4 3 2 6 6 C 1.53000 * 109.47065 * 300.00734 * 5 4 3 7 7 C 1.53008 * 109.46738 * 60.00078 * 5 4 3 8 8 C 1.34180 * 109.12410 * 359.76291 * 4 3 2 9 9 C 1.36418 * 125.80182 * 179.85310 * 2 1 3 10 10 C 1.47377 * 127.19043 * 0.02562 * 9 2 1 11 11 O 1.21618 * 120.00213 * 359.70802 * 10 9 2 12 12 N 1.34776 * 120.00385 * 179.70336 * 10 9 2 13 13 C 1.47578 * 134.49473 * 179.97438 * 12 10 9 14 14 C 1.53950 * 86.11711 * 204.66225 * 13 12 10 15 15 O 1.42905 * 113.73786 * 90.74298 * 14 13 12 16 16 C 1.50702 * 113.74361 * 221.94119 * 14 13 12 17 17 H 1.07997 * 119.99716 * 358.07712 * 16 14 13 18 18 C 1.37877 * 119.99683 * 178.07946 * 16 14 13 19 19 N 1.31519 * 119.99375 * 180.02562 * 18 16 14 20 20 Si 1.86795 * 120.00220 * 359.97438 * 18 16 14 21 21 H 1.48499 * 109.47007 * 90.00544 * 20 18 16 22 22 H 1.48500 * 109.47115 * 209.99966 * 20 18 16 23 23 H 1.48496 * 109.47096 * 330.00048 * 20 18 16 24 24 C 1.47930 * 134.49981 * 0.03791 * 12 10 9 25 25 H 1.08997 * 109.47089 * 270.14694 * 1 2 3 26 26 H 1.09000 * 109.46570 * 30.14656 * 1 2 3 27 27 H 1.09000 * 109.46755 * 150.14021 * 1 2 3 28 28 H 1.08992 * 109.47229 * 179.97438 * 5 4 3 29 29 H 1.09000 * 109.47716 * 59.99185 * 6 5 4 30 30 H 1.08998 * 109.46798 * 179.97438 * 6 5 4 31 31 H 1.09003 * 109.46725 * 299.99283 * 6 5 4 32 32 H 1.09000 * 109.46888 * 300.00108 * 7 5 4 33 33 H 1.08996 * 109.46941 * 60.00079 * 7 5 4 34 34 H 1.08998 * 109.46591 * 180.02562 * 7 5 4 35 35 H 1.08000 * 127.02382 * 179.97438 * 8 4 3 36 36 H 1.09007 * 113.76850 * 90.36997 * 13 12 10 37 37 H 1.08994 * 113.87568 * 318.97975 * 13 12 10 38 38 H 0.96696 * 114.00036 * 181.92461 * 15 14 13 39 39 H 0.97000 * 119.99411 * 179.97438 * 19 18 16 40 40 H 1.09003 * 113.86941 * 41.06551 * 24 12 10 41 41 H 1.09003 * 113.76390 * 269.57872 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0840 0.0000 4 6 3.5860 0.7390 -0.0058 5 6 4.7460 1.7009 -0.0127 6 6 4.6721 2.5800 -1.2627 7 6 4.6842 2.5833 1.2357 8 6 3.6849 -0.5992 -0.0045 9 6 2.3050 -1.1064 0.0028 10 6 1.8739 -2.5157 0.0059 11 8 0.6889 -2.7892 0.0115 12 7 2.7929 -3.5016 0.0025 13 6 2.7281 -4.9760 0.0044 14 6 4.1303 -4.9324 0.6384 15 8 4.1151 -4.9078 2.0672 16 6 5.0815 -5.9585 0.0786 17 1 4.7424 -6.6556 -0.6735 18 6 6.3845 -6.0074 0.5265 19 7 7.2147 -6.9026 0.0375 20 14 6.9711 -4.8014 1.8267 21 1 6.7476 -5.3804 3.1758 22 1 8.4194 -4.5341 1.6366 23 1 6.2127 -3.5308 1.7015 24 6 4.2717 -3.5406 -0.0036 25 1 -0.3633 0.0026 1.0276 26 1 -0.3632 0.8887 -0.5161 27 1 -0.3633 -0.8913 -0.5117 28 1 5.6816 1.1418 -0.0160 29 1 3.7364 3.1391 -1.2590 30 1 5.5109 3.2760 -1.2675 31 1 4.7162 1.9513 -2.1521 32 1 3.7485 3.1424 1.2394 33 1 4.7368 1.9571 2.1263 34 1 5.5230 3.2794 1.2305 35 1 4.5928 -1.1841 -0.0085 36 1 2.7103 -5.4162 -0.9926 37 1 1.9607 -5.3829 0.6628 38 1 4.9929 -4.8508 2.4689 39 1 8.1316 -6.9368 0.3524 40 1 4.7351 -2.8008 0.6491 41 1 4.7065 -3.5599 -1.0029 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336175584.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:31 Heat of formation + Delta-G solvation = -52.982722 kcal Electronic energy + Delta-G solvation = -24117.865899 eV Core-core repulsion = 20579.267862 eV Total energy + Delta-G solvation = -3538.598037 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.70883 -41.30527 -39.21163 -36.64464 -36.24340 -34.56689 -34.11915 -32.37501 -30.71084 -28.15373 -28.06007 -27.34548 -26.93900 -24.07217 -22.77018 -22.20519 -21.32838 -19.68778 -19.22381 -18.12063 -18.03428 -17.48159 -17.24426 -16.63259 -16.34005 -15.90516 -15.52539 -15.33118 -15.11184 -14.89569 -14.44786 -14.25170 -14.18109 -14.07108 -13.93998 -13.79723 -13.69415 -13.05904 -13.03427 -12.89494 -12.66455 -12.47163 -12.18819 -12.16223 -11.96092 -11.88775 -11.49297 -11.12087 -10.91806 -10.87371 -10.50767 -9.77202 -9.40189 -8.43641 -6.56356 0.25891 0.95665 1.24624 1.26751 1.38892 1.59776 1.87784 2.16802 2.24532 2.75693 3.17332 3.32714 3.54697 3.71648 3.80196 3.96380 4.10573 4.14652 4.26771 4.34335 4.36745 4.47006 4.56856 4.58172 4.62626 4.64131 4.77231 4.79454 4.83789 4.88583 4.92703 4.97987 5.06132 5.16006 5.25594 5.30638 5.32508 5.34969 6.00657 6.03160 6.51268 6.63260 6.70917 7.05285 7.12322 8.71715 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015500 B = 0.005359 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.047031 B = 5223.310519 C = 6498.300913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.073 3.927 3 O -0.168 6.168 4 C 0.003 3.997 5 C -0.016 4.016 6 C -0.145 4.145 7 C -0.146 4.146 8 C -0.204 4.204 9 C -0.263 4.263 10 C 0.599 3.401 11 O -0.585 6.585 12 N -0.630 5.630 13 C 0.127 3.873 14 C 0.187 3.813 15 O -0.561 6.561 16 C -0.544 4.544 17 H 0.057 0.943 18 C 0.031 3.969 19 N -0.922 5.922 20 Si 0.914 3.086 21 H -0.258 1.258 22 H -0.278 1.278 23 H -0.231 1.231 24 C 0.078 3.922 25 H 0.097 0.903 26 H 0.106 0.894 27 H 0.091 0.909 28 H 0.113 0.887 29 H 0.057 0.943 30 H 0.088 0.912 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.088 0.912 35 H 0.160 0.840 36 H 0.104 0.896 37 H 0.073 0.927 38 H 0.357 0.643 39 H 0.274 0.726 40 H 0.085 0.915 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.283 21.084 0.431 21.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.020 3.980 3 O -0.064 6.064 4 C -0.046 4.046 5 C -0.034 4.034 6 C -0.202 4.202 7 C -0.203 4.203 8 C -0.223 4.223 9 C -0.267 4.267 10 C 0.392 3.608 11 O -0.469 6.469 12 N -0.362 5.362 13 C 0.005 3.995 14 C 0.146 3.854 15 O -0.372 6.372 16 C -0.582 4.582 17 H 0.076 0.924 18 C -0.170 4.170 19 N -0.559 5.559 20 Si 0.738 3.262 21 H -0.184 1.184 22 H -0.204 1.204 23 H -0.154 1.154 24 C -0.045 4.045 25 H 0.116 0.884 26 H 0.124 0.876 27 H 0.109 0.891 28 H 0.131 0.869 29 H 0.076 0.924 30 H 0.107 0.893 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.107 0.893 35 H 0.178 0.822 36 H 0.122 0.878 37 H 0.091 0.909 38 H 0.209 0.791 39 H 0.084 0.916 40 H 0.103 0.897 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.570 21.274 0.327 21.761 hybrid contribution 1.154 -0.660 0.462 1.407 sum -3.416 20.614 0.789 20.910 Atomic orbital electron populations 1.20633 0.82017 1.05408 1.05093 1.23140 0.94942 0.82571 0.97347 1.83673 1.16891 1.34361 1.71469 1.22794 0.82903 0.94475 1.04404 1.20046 0.91013 0.94122 0.98219 1.21856 1.03367 0.99441 0.95534 1.21866 1.03401 0.99442 0.95596 1.22993 0.96586 0.94384 1.08350 1.21114 0.94920 0.92840 1.17859 1.17222 0.84060 0.84013 0.75509 1.90663 1.17060 1.84524 1.54619 1.49911 1.08254 1.06823 1.71243 1.23279 0.96682 0.78749 1.00806 1.20576 0.94084 0.92189 0.78570 1.86468 1.32992 1.96850 1.20919 1.21320 0.95164 1.17406 1.24325 0.92435 1.25788 0.96489 0.96752 0.98001 1.69994 1.06480 1.35571 1.43861 0.86401 0.78852 0.81026 0.79871 1.18364 1.20379 1.15448 1.24613 0.78703 0.98940 1.02226 0.88442 0.87576 0.89092 0.86925 0.92418 0.89347 0.92758 0.92401 0.92949 0.89298 0.82223 0.87814 0.90873 0.79105 0.91640 0.89684 0.87906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.76 9.89 71.24 0.70 -1.05 16 2 C 0.07 2.16 7.37 25.26 0.19 2.34 16 3 O -0.17 -4.43 10.52 4.39 0.05 -4.38 16 4 C 0.00 0.07 5.79 24.76 0.14 0.21 16 5 C -0.02 -0.27 3.32 -11.54 -0.04 -0.31 16 6 C -0.14 -2.04 9.18 71.98 0.66 -1.38 16 7 C -0.15 -2.11 9.18 71.98 0.66 -1.45 16 8 C -0.20 -6.18 9.93 23.65 0.23 -5.95 16 9 C -0.26 -9.20 6.30 -18.99 -0.12 -9.32 16 10 C 0.60 24.69 8.04 86.65 0.70 25.39 16 11 O -0.58 -26.05 15.58 -4.09 -0.06 -26.11 16 12 N -0.63 -26.14 3.62 -843.29 -3.05 -29.19 16 13 C 0.13 5.43 8.23 86.49 0.71 6.14 16 14 C 0.19 8.48 1.05 -10.89 -0.01 8.47 16 15 O -0.56 -26.00 13.35 -148.98 -1.99 -27.98 16 16 C -0.54 -28.47 9.20 25.60 0.24 -28.23 16 17 H 0.06 3.31 8.06 -2.91 -0.02 3.28 16 18 C 0.03 1.62 5.47 84.65 0.46 2.09 16 19 N -0.92 -52.12 13.96 21.45 0.30 -51.82 16 20 Si 0.91 37.44 24.31 68.60 1.67 39.11 16 21 H -0.26 -10.21 7.05 99.48 0.70 -9.51 16 22 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 23 H -0.23 -8.43 5.16 99.48 0.51 -7.91 16 24 C 0.08 3.08 5.75 86.41 0.50 3.57 16 25 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.09 2.50 6.49 -2.39 -0.02 2.48 16 28 H 0.11 1.70 8.09 -2.39 -0.02 1.68 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.16 4.66 5.49 -2.91 -0.02 4.64 16 36 H 0.10 4.18 8.09 -2.38 -0.02 4.16 16 37 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 38 H 0.36 15.31 3.57 -74.06 -0.26 15.04 16 39 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 40 H 0.09 3.13 4.94 -2.39 -0.01 3.12 16 41 H 0.10 3.89 8.09 -2.39 -0.02 3.87 16 Total: -1.00 -66.46 333.73 2.52 -63.94 By element: Atomic # 1 Polarization: 35.35 SS G_CDS: 0.59 Total: 35.93 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: 5.02 Total: 0.51 kcal Atomic # 7 Polarization: -78.26 SS G_CDS: -2.75 Total: -81.01 kcal Atomic # 8 Polarization: -56.48 SS G_CDS: -2.01 Total: -58.48 kcal Atomic # 14 Polarization: 37.44 SS G_CDS: 1.67 Total: 39.11 kcal Total: -66.46 2.52 -63.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336175584.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.952 kcal (2) G-P(sol) polarization free energy of solvation -66.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds