Wall clock time and date at job start Tue Mar 31 2020 06:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35996 * 116.99963 * 2 1 4 4 C 1.38561 * 120.06955 * 0.02562 * 3 2 1 5 5 C 1.38247 * 119.99676 * 179.97438 * 4 3 2 6 6 C 1.50695 * 119.92714 * 179.97438 * 5 4 3 7 7 C 1.38254 * 120.14245 * 359.74288 * 5 4 3 8 8 C 1.38238 * 120.15025 * 0.51541 * 7 5 4 9 9 C 1.38570 * 119.99772 * 359.48447 * 8 7 5 10 10 O 1.35986 * 120.07459 * 180.23600 * 9 8 7 11 11 C 1.42902 * 116.99897 * 359.97438 * 10 9 8 12 12 C 1.50708 * 109.46970 * 180.02562 * 11 10 9 13 13 O 1.21279 * 120.00211 * 359.97438 * 12 11 10 14 14 N 1.34781 * 119.99858 * 180.02562 * 12 11 10 15 15 C 1.46492 * 119.99984 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.47421 * 179.97438 * 15 14 12 17 17 C 1.50699 * 109.47436 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99852 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99969 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00227 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99958 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47139 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47096 * 119.99849 * 21 19 17 24 24 H 1.48502 * 109.46961 * 239.99532 * 21 19 17 25 25 H 1.09000 * 109.46792 * 299.99909 * 1 2 3 26 26 H 1.08998 * 109.46848 * 60.00277 * 1 2 3 27 27 H 1.09000 * 109.47018 * 179.97438 * 1 2 3 28 28 H 1.08001 * 120.00615 * 359.95566 * 4 3 2 29 29 H 1.09009 * 109.47236 * 89.99812 * 6 5 4 30 30 H 1.09003 * 109.47238 * 209.99668 * 6 5 4 31 31 H 1.09000 * 109.47485 * 330.00048 * 6 5 4 32 32 H 1.08000 * 119.92248 * 180.25193 * 7 5 4 33 33 H 1.08002 * 120.00519 * 179.76978 * 8 7 5 34 34 H 1.08995 * 109.47254 * 300.00109 * 11 10 9 35 35 H 1.08999 * 109.47402 * 60.00178 * 11 10 9 36 36 H 0.96998 * 119.99589 * 359.97438 * 14 12 11 37 37 H 1.09000 * 109.47507 * 300.00035 * 15 14 12 38 38 H 1.09004 * 109.47036 * 60.00255 * 15 14 12 39 39 H 1.09000 * 109.47150 * 300.00672 * 16 15 14 40 40 H 1.09004 * 109.47043 * 59.99577 * 16 15 14 41 41 H 0.96996 * 120.00445 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2932 2.3747 0.0005 5 6 1.9224 3.6057 0.0011 6 6 1.1017 4.8695 0.0011 7 6 3.3030 3.6798 0.0064 8 6 4.0603 2.5233 0.0005 9 6 3.4360 1.2863 0.0000 10 8 4.1795 0.1477 -0.0009 11 6 5.6003 0.3007 -0.0019 12 6 6.2519 -1.0583 -0.0035 13 8 5.5670 -2.0592 -0.0033 14 7 7.5958 -1.1613 -0.0041 15 6 8.2291 -2.4822 -0.0051 16 6 9.7503 -2.3185 -0.0063 17 6 10.4019 -3.6773 -0.0079 18 1 9.7920 -4.5686 -0.0085 19 6 11.7766 -3.7827 -0.0087 20 7 12.5193 -2.6973 -0.0085 21 14 12.5843 -5.4670 -0.0100 22 1 11.5358 -6.5187 -0.0094 23 1 13.4289 -5.6101 -1.2231 24 1 13.4302 -5.6113 1.2020 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2146 2.3196 0.0002 29 1 0.9033 5.1740 1.0288 30 1 1.6504 5.6592 -0.5123 31 1 0.1576 4.6897 -0.5131 32 1 3.7908 4.6433 0.0110 33 1 5.1387 2.5839 0.0010 34 1 5.9059 0.8508 -0.8919 35 1 5.9073 0.8501 0.8880 36 1 8.1435 -0.3607 -0.0039 37 1 7.9233 -3.0325 0.8847 38 1 7.9226 -3.0315 -0.8953 39 1 10.0559 -1.7683 -0.8963 40 1 10.0573 -1.7689 0.8836 41 1 13.4865 -2.7714 -0.0093 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342666524.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:33 Heat of formation + Delta-G solvation = -96.014213 kcal Electronic energy + Delta-G solvation = -22260.427444 eV Core-core repulsion = 18719.963421 eV Total energy + Delta-G solvation = -3540.464022 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.81058 -39.43807 -38.23201 -37.31947 -34.87330 -32.88863 -32.20831 -30.66860 -30.09907 -28.43778 -27.69912 -26.14132 -24.59289 -22.61203 -21.70122 -21.00847 -20.19083 -18.71041 -17.30375 -17.16621 -16.49323 -16.49045 -16.09508 -15.74517 -15.23827 -14.75605 -14.52430 -14.51595 -14.45721 -14.09713 -13.90470 -13.45281 -13.11117 -12.85456 -12.42553 -12.34863 -12.31574 -12.13075 -11.49212 -11.36109 -11.31190 -11.22036 -11.06188 -10.92312 -10.63820 -10.36250 -9.81187 -9.48678 -9.20371 -8.93938 -8.59302 -8.39126 -7.92012 -6.11076 -4.13796 1.03330 1.19618 2.69527 2.88494 3.09256 3.27948 3.35629 3.41045 3.45208 3.87373 4.40707 4.46544 4.57699 4.69487 4.80129 4.89806 4.93471 4.99337 5.02512 5.03232 5.13581 5.26243 5.26379 5.28411 5.29190 5.40583 5.61649 5.90904 6.00681 6.28619 6.30538 6.32225 6.44995 6.70606 6.81799 6.89797 7.40605 7.49883 7.58818 7.87144 7.92109 8.25503 8.56757 8.92379 9.51271 11.00563 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.033735 B = 0.002347 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.793787 B =11927.593098 C =12721.032551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.301 6.301 3 C 0.105 3.895 4 C -0.174 4.174 5 C -0.090 4.090 6 C -0.109 4.109 7 C -0.116 4.116 8 C -0.172 4.172 9 C 0.099 3.901 10 O -0.277 6.277 11 C 0.039 3.961 12 C 0.507 3.493 13 O -0.524 6.524 14 N -0.719 5.719 15 C 0.123 3.877 16 C 0.012 3.988 17 C -0.521 4.521 18 H 0.060 0.940 19 C 0.058 3.942 20 N -0.894 5.894 21 Si 0.897 3.103 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.283 1.283 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.100 0.900 28 H 0.134 0.866 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.127 0.873 33 H 0.137 0.863 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.399 0.601 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.460 16.939 0.043 28.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.214 6.214 3 C 0.059 3.941 4 C -0.193 4.193 5 C -0.090 4.090 6 C -0.166 4.166 7 C -0.135 4.135 8 C -0.191 4.191 9 C 0.053 3.947 10 O -0.189 6.189 11 C -0.040 4.040 12 C 0.291 3.709 13 O -0.400 6.400 14 N -0.371 5.371 15 C 0.001 3.999 16 C -0.025 4.025 17 C -0.560 4.560 18 H 0.079 0.921 19 C -0.143 4.143 20 N -0.533 5.533 21 Si 0.725 3.275 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.209 1.209 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.119 0.881 28 H 0.151 0.849 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.145 0.855 33 H 0.155 0.845 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.232 0.768 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.041 0.959 40 H 0.042 0.958 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -22.759 15.832 0.042 27.724 hybrid contribution 0.834 -0.104 0.004 0.840 sum -21.926 15.728 0.046 26.983 Atomic orbital electron populations 1.23069 0.78744 1.04099 1.00931 1.86276 1.20839 1.25595 1.88707 1.18246 0.89095 0.85330 1.01402 1.20909 0.99744 0.90943 1.07722 1.19595 0.93910 0.94508 1.00976 1.20730 0.99169 0.94439 1.02261 1.20728 0.92939 0.97893 1.01901 1.21120 1.00611 0.90998 1.06324 1.18336 0.88430 0.86138 1.01794 1.86283 1.16647 1.27412 1.88580 1.22574 0.80460 0.97465 1.03511 1.19932 0.83127 0.89924 0.77951 1.90736 1.62876 1.38015 1.48386 1.46186 1.05150 1.11469 1.74282 1.21774 0.95824 0.81206 1.01057 1.19339 0.86955 0.98304 0.97924 1.21088 0.91482 0.92170 1.51229 0.92133 1.25000 0.97420 0.96949 0.94973 1.69960 1.05178 1.27712 1.50471 0.86448 0.79390 0.84070 0.77612 1.19556 1.20926 1.20931 0.92830 0.92835 0.88121 0.84857 0.91239 0.91437 0.91739 0.85534 0.84497 0.89178 0.89170 0.76789 0.92343 0.92349 0.95852 0.95850 0.92883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.30 -4.09 10.28 -34.23 -0.35 -4.44 16 3 C 0.11 1.35 6.70 -39.12 -0.26 1.09 16 4 C -0.17 -1.71 8.69 -39.46 -0.34 -2.05 16 5 C -0.09 -0.79 5.88 -104.61 -0.62 -1.41 16 6 C -0.11 -0.64 10.01 36.00 0.36 -0.28 16 7 C -0.12 -1.05 9.69 -39.58 -0.38 -1.43 16 8 C -0.17 -1.79 9.04 -39.46 -0.36 -2.15 16 9 C 0.10 1.34 6.70 -39.12 -0.26 1.07 16 10 O -0.28 -4.43 9.45 -47.32 -0.45 -4.88 16 11 C 0.04 0.51 5.22 36.01 0.19 0.69 16 12 C 0.51 8.91 7.91 -10.98 -0.09 8.82 16 13 O -0.52 -11.73 16.50 -14.35 -0.24 -11.97 16 14 N -0.72 -12.32 5.56 -60.29 -0.33 -12.66 16 15 C 0.12 2.62 5.61 -4.05 -0.02 2.59 16 16 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 17 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 18 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -25.97 13.29 55.43 0.74 -25.24 16 21 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 26 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 27 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.13 0.98 6.30 -52.49 -0.33 0.65 16 29 H 0.07 0.36 8.14 -51.92 -0.42 -0.07 16 30 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 31 H 0.06 0.32 8.08 -51.93 -0.42 -0.10 16 32 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.14 1.12 6.30 -52.49 -0.33 0.79 16 34 H 0.09 0.92 7.66 -51.93 -0.40 0.52 16 35 H 0.09 0.92 7.66 -51.93 -0.40 0.52 16 36 H 0.40 5.60 8.47 -40.82 -0.35 5.25 16 37 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 351.70 15.07 5.30 5.30 Total: -1.00 -35.08 351.70 -7.64 -42.72 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -5.94 Total: -0.32 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -1.34 Total: -4.87 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.40 Total: -37.89 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -1.04 Total: -21.29 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.08 -7.64 -42.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342666524.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.295 kcal (2) G-P(sol) polarization free energy of solvation -35.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds