Wall clock time and date at job start Tue Mar 31 2020 06:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35996 * 116.99963 * 2 1 4 4 C 1.38561 * 120.06955 * 0.02562 * 3 2 1 5 5 C 1.38247 * 119.99676 * 179.97438 * 4 3 2 6 6 C 1.50695 * 119.92714 * 179.97438 * 5 4 3 7 7 C 1.38254 * 120.14245 * 359.74288 * 5 4 3 8 8 C 1.38238 * 120.15025 * 0.51541 * 7 5 4 9 9 C 1.38570 * 119.99772 * 359.48447 * 8 7 5 10 10 O 1.35986 * 120.07459 * 180.23600 * 9 8 7 11 11 C 1.42902 * 116.99897 * 359.97438 * 10 9 8 12 12 C 1.50708 * 109.46970 * 180.02562 * 11 10 9 13 13 O 1.21279 * 120.00211 * 359.97438 * 12 11 10 14 14 N 1.34781 * 119.99858 * 180.02562 * 12 11 10 15 15 C 1.46492 * 119.99984 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.47421 * 179.97438 * 15 14 12 17 17 C 1.50699 * 109.47436 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99852 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99969 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00227 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99958 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47139 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47096 * 119.99849 * 21 19 17 24 24 H 1.48502 * 109.46961 * 239.99532 * 21 19 17 25 25 H 1.09000 * 109.46792 * 299.99909 * 1 2 3 26 26 H 1.08998 * 109.46848 * 60.00277 * 1 2 3 27 27 H 1.09000 * 109.47018 * 179.97438 * 1 2 3 28 28 H 1.08001 * 120.00615 * 359.95566 * 4 3 2 29 29 H 1.09009 * 109.47236 * 89.99812 * 6 5 4 30 30 H 1.09003 * 109.47238 * 209.99668 * 6 5 4 31 31 H 1.09000 * 109.47485 * 330.00048 * 6 5 4 32 32 H 1.08000 * 119.92248 * 180.25193 * 7 5 4 33 33 H 1.08002 * 120.00519 * 179.76978 * 8 7 5 34 34 H 1.08995 * 109.47254 * 300.00109 * 11 10 9 35 35 H 1.08999 * 109.47402 * 60.00178 * 11 10 9 36 36 H 0.96998 * 119.99589 * 359.97438 * 14 12 11 37 37 H 1.09000 * 109.47507 * 300.00035 * 15 14 12 38 38 H 1.09004 * 109.47036 * 60.00255 * 15 14 12 39 39 H 1.09000 * 109.47150 * 300.00672 * 16 15 14 40 40 H 1.09004 * 109.47043 * 59.99577 * 16 15 14 41 41 H 0.96996 * 120.00445 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2932 2.3747 0.0005 5 6 1.9224 3.6057 0.0011 6 6 1.1017 4.8695 0.0011 7 6 3.3030 3.6798 0.0064 8 6 4.0603 2.5233 0.0005 9 6 3.4360 1.2863 0.0000 10 8 4.1795 0.1477 -0.0009 11 6 5.6003 0.3007 -0.0019 12 6 6.2519 -1.0583 -0.0035 13 8 5.5670 -2.0592 -0.0033 14 7 7.5958 -1.1613 -0.0041 15 6 8.2291 -2.4822 -0.0051 16 6 9.7503 -2.3185 -0.0063 17 6 10.4019 -3.6773 -0.0079 18 1 9.7920 -4.5686 -0.0085 19 6 11.7766 -3.7827 -0.0087 20 7 12.5193 -2.6973 -0.0085 21 14 12.5843 -5.4670 -0.0100 22 1 11.5358 -6.5187 -0.0094 23 1 13.4289 -5.6101 -1.2231 24 1 13.4302 -5.6113 1.2020 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2146 2.3196 0.0002 29 1 0.9033 5.1740 1.0288 30 1 1.6504 5.6592 -0.5123 31 1 0.1576 4.6897 -0.5131 32 1 3.7908 4.6433 0.0110 33 1 5.1387 2.5839 0.0010 34 1 5.9059 0.8508 -0.8919 35 1 5.9073 0.8501 0.8880 36 1 8.1435 -0.3607 -0.0039 37 1 7.9233 -3.0325 0.8847 38 1 7.9226 -3.0315 -0.8953 39 1 10.0559 -1.7683 -0.8963 40 1 10.0573 -1.7689 0.8836 41 1 13.4865 -2.7714 -0.0093 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342666524.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:32 Heat of formation + Delta-G solvation = -119.174193 kcal Electronic energy + Delta-G solvation = -22261.431736 eV Core-core repulsion = 18719.963421 eV Total energy + Delta-G solvation = -3541.468314 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.67920 -40.72362 -39.27027 -38.13544 -36.61425 -34.86034 -32.93329 -31.99299 -31.24782 -29.57377 -28.49998 -26.93333 -26.36111 -23.54715 -22.88383 -22.39388 -21.55438 -19.62139 -18.58762 -18.27127 -18.07039 -17.52536 -17.25588 -16.66140 -16.59989 -16.41946 -15.93791 -15.61260 -15.24307 -15.03401 -14.78028 -14.53347 -14.34560 -14.30135 -13.80784 -13.23058 -13.19297 -13.01628 -12.95062 -12.73616 -12.53955 -12.27966 -12.23173 -12.10943 -12.02864 -11.68803 -11.66290 -11.45022 -10.90331 -10.61538 -10.10227 -9.67305 -8.74419 -8.24976 -6.34905 0.29272 0.42932 1.40517 1.41590 1.49807 1.53741 1.59745 2.38922 2.39669 2.70789 2.71862 3.09931 3.60081 3.82987 3.95387 3.98120 4.10255 4.11837 4.25636 4.36208 4.37480 4.42795 4.47333 4.47559 4.65524 4.69630 4.83680 4.84590 4.90530 5.10798 5.22353 5.28037 5.29710 5.46565 5.57771 5.63009 5.77114 5.79585 6.05223 6.15459 6.51689 6.63601 6.78173 7.18456 7.34307 8.86936 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.033735 B = 0.002347 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.793787 B =11927.593098 C =12721.032551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.341 6.341 3 C 0.078 3.922 4 C -0.175 4.175 5 C -0.088 4.088 6 C -0.108 4.108 7 C -0.119 4.119 8 C -0.169 4.169 9 C 0.061 3.939 10 O -0.317 6.317 11 C 0.047 3.953 12 C 0.506 3.494 13 O -0.579 6.579 14 N -0.708 5.708 15 C 0.141 3.859 16 C 0.023 3.977 17 C -0.547 4.547 18 H 0.057 0.943 19 C 0.008 3.992 20 N -0.925 5.925 21 Si 0.964 3.036 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.276 1.276 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.108 0.892 28 H 0.154 0.846 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.155 0.845 33 H 0.159 0.841 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.416 0.584 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.013 0.987 40 H 0.013 0.987 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.992 19.030 0.041 29.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.255 6.255 3 C 0.033 3.967 4 C -0.194 4.194 5 C -0.088 4.088 6 C -0.165 4.165 7 C -0.137 4.137 8 C -0.188 4.188 9 C 0.016 3.984 10 O -0.230 6.230 11 C -0.031 4.031 12 C 0.292 3.708 13 O -0.459 6.459 14 N -0.361 5.361 15 C 0.017 3.983 16 C -0.014 4.014 17 C -0.586 4.586 18 H 0.075 0.925 19 C -0.191 4.191 20 N -0.564 5.564 21 Si 0.789 3.211 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.202 1.202 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.126 0.874 28 H 0.172 0.828 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.173 0.827 33 H 0.176 0.824 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.253 0.747 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.031 0.969 40 H 0.031 0.969 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -23.292 17.976 0.040 29.422 hybrid contribution 0.916 -0.657 0.005 1.128 sum -22.376 17.319 0.045 28.295 Atomic orbital electron populations 1.23319 0.76626 1.05191 1.02373 1.86208 1.23343 1.26832 1.89166 1.18669 0.89489 0.85967 1.02612 1.21196 1.00742 0.90428 1.07032 1.20061 0.94453 0.95291 0.99043 1.20804 0.99289 0.93129 1.03259 1.21136 0.93187 0.98593 1.00821 1.21419 1.01865 0.90257 1.05226 1.18735 0.88764 0.86391 1.04514 1.86201 1.17690 1.29533 1.89620 1.22590 0.79638 0.94234 1.06608 1.20754 0.82594 0.91358 0.76073 1.90709 1.63971 1.40398 1.50798 1.45921 1.05578 1.10633 1.73964 1.21269 0.93981 0.83123 0.99916 1.19142 0.88762 0.96804 0.96712 1.21492 0.92199 0.93371 1.51493 0.92492 1.25845 0.98015 1.00817 0.94445 1.70048 1.05641 1.29731 1.51014 0.85409 0.78348 0.79427 0.77934 1.19174 1.20162 1.20174 0.91315 0.91317 0.87366 0.82804 0.90186 0.90125 0.90761 0.82719 0.82370 0.85856 0.85842 0.74696 0.93549 0.93559 0.96903 0.96899 0.92497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.42 16 2 O -0.34 -9.62 10.28 -79.63 -0.82 -10.43 16 3 C 0.08 2.01 6.70 22.57 0.15 2.16 16 4 C -0.18 -3.19 8.69 22.35 0.19 -3.00 16 5 C -0.09 -1.33 5.88 -19.86 -0.12 -1.44 16 6 C -0.11 -0.89 10.01 71.23 0.71 -0.17 16 7 C -0.12 -1.80 9.69 22.27 0.22 -1.58 16 8 C -0.17 -3.19 9.04 22.35 0.20 -2.98 16 9 C 0.06 1.63 6.70 22.57 0.15 1.78 16 10 O -0.32 -10.28 9.45 -66.98 -0.63 -10.91 16 11 C 0.05 1.18 5.22 71.24 0.37 1.55 16 12 C 0.51 17.85 7.91 87.66 0.69 18.54 16 13 O -0.58 -26.86 16.50 16.01 0.26 -26.60 16 14 N -0.71 -24.16 5.56 -463.06 -2.57 -26.73 16 15 C 0.14 6.10 5.61 86.38 0.48 6.58 16 16 C 0.02 1.16 5.09 29.85 0.15 1.31 16 17 C -0.55 -30.62 9.11 25.60 0.23 -30.39 16 18 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 19 C 0.01 0.43 5.46 84.65 0.46 0.89 16 20 N -0.92 -53.78 13.29 21.45 0.28 -53.49 16 21 Si 0.96 43.76 29.54 68.60 2.03 45.79 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 23 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 24 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 25 H 0.07 0.85 7.66 -2.39 -0.02 0.83 16 26 H 0.07 0.85 7.66 -2.39 -0.02 0.83 16 27 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.15 1.97 6.30 -2.91 -0.02 1.95 16 29 H 0.08 0.53 8.14 -2.38 -0.02 0.52 16 30 H 0.08 0.48 8.09 -2.39 -0.02 0.46 16 31 H 0.07 0.48 8.08 -2.39 -0.02 0.47 16 32 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 33 H 0.16 2.10 6.30 -2.91 -0.02 2.08 16 34 H 0.12 2.22 7.66 -2.39 -0.02 2.20 16 35 H 0.12 2.22 7.66 -2.39 -0.02 2.20 16 36 H 0.42 11.24 8.47 -92.71 -0.79 10.45 16 37 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -78.47 351.70 3.82 -74.64 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 0.25 Total: 13.07 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: 5.02 Total: -5.33 kcal Atomic # 7 Polarization: -77.93 SS G_CDS: -2.29 Total: -80.22 kcal Atomic # 8 Polarization: -46.75 SS G_CDS: -1.19 Total: -47.94 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -78.47 3.82 -74.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342666524.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.532 kcal (2) G-P(sol) polarization free energy of solvation -78.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds