Wall clock time and date at job start Tue Mar 31 2020 06:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99843 * 2 1 4 4 H 1.48503 * 109.47128 * 240.00122 * 3 2 1 5 5 H 1.48500 * 109.47139 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47156 * 119.99874 * 3 2 1 7 7 C 1.37874 * 120.00209 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00342 * 172.18051 * 7 2 1 9 9 C 1.50700 * 119.99937 * 352.17876 * 7 2 1 10 10 C 1.53005 * 115.55250 * 86.22863 * 9 7 2 11 11 N 1.46903 * 109.46390 * 34.68463 * 10 9 7 12 12 C 1.46907 * 110.99574 * 184.11609 * 11 10 9 13 13 H 1.09003 * 109.54164 * 31.70478 * 12 11 10 14 14 C 1.53168 * 109.54566 * 271.52529 * 12 11 10 15 15 C 1.53094 * 109.16507 * 297.11547 * 14 12 11 16 16 O 1.42909 * 109.41069 * 302.39206 * 15 14 12 17 17 C 1.42898 * 114.10107 * 61.15946 * 16 15 14 18 18 H 1.08994 * 109.47993 * 58.82841 * 17 16 15 19 19 C 1.52989 * 109.48313 * 178.85749 * 17 16 15 20 20 F 1.39905 * 109.47050 * 59.99917 * 19 17 16 21 21 F 1.39903 * 109.47583 * 179.97438 * 19 17 16 22 22 F 1.39895 * 109.47194 * 299.99850 * 19 17 16 23 23 C 1.53176 * 109.53825 * 151.87741 * 12 11 10 24 24 C 1.53009 * 117.52029 * 231.93281 * 9 7 2 25 25 C 1.53006 * 60.00007 * 107.48191 * 24 9 7 26 26 H 0.96997 * 120.00014 * 5.02467 * 1 2 3 27 27 H 1.08998 * 109.47220 * 154.68073 * 10 9 7 28 28 H 1.08997 * 109.47251 * 274.68688 * 10 9 7 29 29 H 1.00901 * 111.00411 * 60.16791 * 11 10 9 30 30 H 1.09003 * 109.52471 * 57.01873 * 14 12 11 31 31 H 1.09001 * 109.52694 * 177.20746 * 14 12 11 32 32 H 1.08997 * 109.48457 * 62.36951 * 15 14 12 33 33 H 1.09000 * 109.48042 * 182.40191 * 15 14 12 34 34 H 1.09008 * 109.52070 * 182.79658 * 23 12 11 35 35 H 1.09003 * 109.52797 * 302.97695 * 23 12 11 36 36 H 1.08995 * 117.49728 * 214.97034 * 24 9 7 37 37 H 1.08997 * 117.49288 * 359.97438 * 24 9 7 38 38 H 1.08996 * 117.49739 * 252.51018 * 25 24 9 39 39 H 1.09002 * 117.49699 * 107.48985 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0771 -1.1983 -0.1278 9 6 1.2617 -2.4931 0.1765 10 6 0.6957 -3.1096 -1.1044 11 7 1.6074 -2.8364 -2.2234 12 6 1.0491 -3.3293 -3.4897 13 1 -0.0384 -3.2615 -3.4596 14 6 1.4659 -4.7881 -3.7001 15 6 2.9905 -4.8633 -3.8176 16 8 3.4254 -4.0312 -4.8950 17 6 3.1051 -2.6483 -4.7303 18 1 3.5602 -2.2766 -3.8123 19 6 3.6412 -1.8548 -5.9234 20 9 3.0563 -2.3317 -7.1014 21 9 3.3270 -0.5010 -5.7622 22 9 5.0299 -2.0059 -5.9978 23 6 1.5833 -2.4828 -4.6491 24 6 1.7602 -3.4506 1.2608 25 6 0.4562 -2.6766 1.4644 26 1 -0.4850 0.8368 -0.0736 27 1 0.5926 -4.1869 -0.9744 28 1 -0.2807 -2.6740 -1.3166 29 1 2.5194 -3.2327 -2.0519 30 1 1.1360 -5.3873 -2.8514 31 1 1.0109 -5.1687 -4.6146 32 1 3.4441 -4.5205 -2.8877 33 1 3.2898 -5.8935 -4.0101 34 1 1.1307 -2.8169 -5.5828 35 1 1.3373 -1.4347 -4.4786 36 1 1.6851 -4.5196 1.0616 37 1 2.6261 -3.1411 1.8461 38 1 0.4640 -1.8578 2.1838 39 1 -0.4768 -3.2364 1.3991 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348274645.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:45 Heat of formation + Delta-G solvation = -189.109802 kcal Electronic energy + Delta-G solvation = -25237.615916 eV Core-core repulsion = 21151.258226 eV Total energy + Delta-G solvation = -4086.357690 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.134 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -51.15123 -48.67936 -48.62271 -40.89728 -38.58266 -36.35055 -33.81871 -33.16733 -31.94726 -28.05784 -27.42630 -25.81544 -25.04168 -23.74044 -22.85432 -20.94017 -20.61921 -19.58000 -19.31528 -19.06631 -17.88181 -17.09612 -16.75909 -16.59330 -16.32481 -15.92599 -15.56603 -15.43286 -15.39478 -15.07133 -14.88536 -14.83091 -14.77468 -14.69964 -14.39914 -13.66866 -13.57457 -13.15745 -13.05911 -12.86327 -12.80654 -12.61857 -12.43034 -12.34553 -12.02859 -11.89780 -11.52068 -11.19407 -10.71860 -10.61247 -10.27663 -9.83318 -8.93688 -7.94776 -5.98631 1.45789 1.47482 1.47722 1.52087 2.30316 2.52247 2.77096 2.95854 3.30202 3.37042 3.49236 3.59806 3.69438 3.89868 3.96278 4.02279 4.13034 4.38064 4.46053 4.55819 4.66348 4.71220 4.76136 4.81534 4.89041 4.97154 5.02944 5.07365 5.14374 5.22752 5.34113 5.68006 5.71716 5.85643 5.93291 6.40809 6.61139 6.78999 7.02569 7.65171 9.13571 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.015265 B = 0.006007 C = 0.004806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.868769 B = 4660.104920 C = 5824.175782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.033 3.967 3 Si 0.930 3.070 4 H -0.275 1.275 5 H -0.294 1.294 6 H -0.279 1.279 7 C -0.466 4.466 8 H 0.048 0.952 9 C 0.020 3.980 10 C 0.127 3.873 11 N -0.667 5.667 12 C 0.087 3.913 13 H 0.078 0.922 14 C -0.178 4.178 15 C 0.062 3.938 16 O -0.375 6.375 17 C 0.057 3.943 18 H 0.104 0.896 19 C 0.465 3.535 20 F -0.178 7.178 21 F -0.179 7.179 22 F -0.183 7.183 23 C -0.132 4.132 24 C -0.192 4.192 25 C -0.167 4.167 26 H 0.252 0.748 27 H 0.019 0.981 28 H 0.040 0.960 29 H 0.335 0.665 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.057 0.943 33 H 0.128 0.872 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.052 0.948 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.110 -9.925 -10.132 14.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.166 4.166 3 Si 0.758 3.242 4 H -0.200 1.200 5 H -0.220 1.220 6 H -0.204 1.204 7 C -0.505 4.505 8 H 0.066 0.934 9 C 0.019 3.981 10 C -0.002 4.002 11 N -0.299 5.299 12 C -0.024 4.024 13 H 0.097 0.903 14 C -0.217 4.217 15 C -0.014 4.014 16 O -0.295 6.295 17 C -0.003 4.003 18 H 0.122 0.878 19 C 0.411 3.589 20 F -0.159 7.159 21 F -0.160 7.160 22 F -0.164 7.164 23 C -0.170 4.170 24 C -0.229 4.229 25 C -0.206 4.206 26 H 0.061 0.939 27 H 0.037 0.963 28 H 0.058 0.942 29 H 0.155 0.845 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.075 0.925 33 H 0.146 0.854 34 H 0.111 0.889 35 H 0.096 0.904 36 H 0.110 0.890 37 H 0.091 0.909 38 H 0.071 0.929 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.841 -9.197 -10.338 14.360 hybrid contribution 0.231 0.684 0.351 0.803 sum 4.072 -8.513 -9.987 13.740 Atomic orbital electron populations 1.70057 1.06717 1.26392 1.51607 1.25371 0.95212 1.00794 0.95227 0.86059 0.78647 0.81088 0.78374 1.20024 1.21992 1.20437 1.20301 0.92472 0.89688 1.47991 0.93407 1.19088 0.98089 0.94123 0.86778 1.21175 0.94598 0.94130 0.90339 1.60272 1.05233 1.63366 1.01012 1.21552 0.99462 0.91920 0.89449 0.90330 1.22800 0.97126 0.97580 1.04184 1.22867 0.93833 0.95574 0.89112 1.87867 1.79983 1.15213 1.46415 1.23037 0.98061 0.84593 0.94575 0.87825 1.20308 0.75641 0.78313 0.84651 1.93168 1.83925 1.87988 1.50864 1.93211 1.92730 1.34448 1.95608 1.93176 1.31078 1.95449 1.96693 1.22187 0.92214 1.02633 0.99972 1.23100 0.97036 0.96566 1.06170 1.22387 0.93583 1.01053 1.03530 0.93893 0.96331 0.94196 0.84477 0.89709 0.89281 0.92458 0.85382 0.88936 0.90414 0.89018 0.90861 0.92879 0.91064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.03 12.92 21.45 0.28 -50.75 16 2 C 0.03 1.78 5.37 84.65 0.45 2.23 16 3 Si 0.93 43.61 29.55 68.60 2.03 45.64 16 4 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 5 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 6 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 7 C -0.47 -23.95 8.04 25.60 0.21 -23.74 16 8 H 0.05 2.47 7.83 -2.91 -0.02 2.45 16 9 C 0.02 0.89 1.78 -52.92 -0.09 0.80 16 10 C 0.13 4.97 5.66 86.30 0.49 5.46 16 11 N -0.67 -23.23 4.99 -490.95 -2.45 -25.68 16 12 C 0.09 2.40 2.88 45.03 0.13 2.53 16 13 H 0.08 2.29 7.69 -2.39 -0.02 2.28 16 14 C -0.18 -3.70 5.74 30.68 0.18 -3.52 16 15 C 0.06 1.25 6.59 72.01 0.47 1.73 16 16 O -0.38 -9.44 10.30 -148.98 -1.53 -10.97 16 17 C 0.06 1.55 2.39 30.69 0.07 1.62 16 18 H 0.10 3.03 7.46 -2.39 -0.02 3.01 16 19 C 0.47 12.93 2.85 71.98 0.21 13.14 16 20 F -0.18 -4.83 16.70 44.97 0.75 -4.08 16 21 F -0.18 -5.34 16.85 44.97 0.76 -4.58 16 22 F -0.18 -5.20 17.26 44.97 0.78 -4.43 16 23 C -0.13 -3.59 4.88 30.75 0.15 -3.44 16 24 C -0.19 -7.49 9.88 30.60 0.30 -7.19 16 25 C -0.17 -7.48 9.44 30.60 0.29 -7.19 16 26 H 0.25 13.90 8.32 -92.71 -0.77 13.13 16 27 H 0.02 0.64 7.50 -2.39 -0.02 0.62 16 28 H 0.04 1.79 7.95 -2.39 -0.02 1.77 16 29 H 0.34 10.95 5.98 -89.69 -0.54 10.41 16 30 H 0.08 1.68 7.74 -2.39 -0.02 1.66 16 31 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.06 1.22 6.41 -2.39 -0.02 1.20 16 33 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.09 2.22 7.74 -2.38 -0.02 2.20 16 35 H 0.08 2.43 7.89 -2.39 -0.02 2.41 16 36 H 0.09 3.02 8.05 -2.39 -0.02 3.00 16 37 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 38 H 0.05 2.63 8.14 -2.39 -0.02 2.61 16 39 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 Total: -1.00 -57.58 326.66 3.99 -53.59 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: 0.53 Total: 18.83 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: 2.86 Total: -17.58 kcal Atomic # 7 Polarization: -74.26 SS G_CDS: -2.17 Total: -76.43 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: -1.53 Total: -10.97 kcal Atomic # 9 Polarization: -15.37 SS G_CDS: 2.29 Total: -13.08 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -57.58 3.99 -53.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348274645.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.517 kcal (2) G-P(sol) polarization free energy of solvation -57.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds