Wall clock time and date at job start Tue Mar 31 2020 06:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99839 * 2 1 4 4 H 1.48506 * 109.47259 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.47051 * 119.99996 * 3 2 1 6 6 H 1.48498 * 109.47167 * 239.99730 * 3 2 1 7 7 C 1.37878 * 119.99978 * 180.27696 * 2 1 3 8 8 H 1.07999 * 119.99939 * 175.04780 * 7 2 1 9 9 C 1.50699 * 120.00340 * 355.04306 * 7 2 1 10 10 C 1.52997 * 115.55109 * 279.48070 * 9 7 2 11 11 N 1.46900 * 109.47003 * 294.91318 * 10 9 7 12 12 C 1.46904 * 111.00059 * 174.84805 * 11 10 9 13 13 H 1.09004 * 109.54159 * 324.99821 * 12 11 10 14 14 C 1.53173 * 109.54411 * 85.18054 * 12 11 10 15 15 C 1.53102 * 109.15580 * 176.75802 * 14 12 11 16 16 O 1.42896 * 109.48925 * 302.52235 * 15 14 12 17 17 C 1.42902 * 114.09775 * 61.11094 * 16 15 14 18 18 H 1.09002 * 109.48876 * 58.83176 * 17 16 15 19 19 C 1.52997 * 109.48374 * 178.85887 * 17 16 15 20 20 F 1.39897 * 109.47412 * 179.97438 * 19 17 16 21 21 F 1.39906 * 109.47291 * 299.94745 * 19 17 16 22 22 F 1.39904 * 109.47005 * 59.94221 * 19 17 16 23 23 C 1.53090 * 109.41622 * 298.84555 * 17 16 15 24 24 C 1.52994 * 117.49910 * 133.76634 * 9 7 2 25 25 C 1.53001 * 60.00284 * 252.51288 * 24 9 7 26 26 H 0.96994 * 119.99843 * 359.72456 * 1 2 3 27 27 H 1.09008 * 109.47263 * 54.91201 * 10 9 7 28 28 H 1.09001 * 109.47573 * 174.91426 * 10 9 7 29 29 H 1.00894 * 111.00245 * 298.80649 * 11 10 9 30 30 H 1.09005 * 109.51876 * 296.75313 * 14 12 11 31 31 H 1.09001 * 109.52464 * 56.93942 * 14 12 11 32 32 H 1.09010 * 109.48009 * 182.49509 * 15 14 12 33 33 H 1.08994 * 109.41625 * 62.51366 * 15 14 12 34 34 H 1.08998 * 109.52020 * 297.69746 * 23 17 16 35 35 H 1.09001 * 109.52291 * 177.51119 * 23 17 16 36 36 H 1.08999 * 117.50225 * 0.02562 * 24 9 7 37 37 H 1.09008 * 117.49915 * 145.02511 * 24 9 7 38 38 H 1.08998 * 117.49896 * 252.51596 * 25 24 9 39 39 H 1.09002 * 117.51659 * 107.47795 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2126 6 1 3.1029 1.6964 -1.2124 7 6 2.0045 -1.1940 -0.0058 8 1 3.0815 -1.1954 -0.0865 9 6 1.2553 -2.4973 0.1007 10 6 0.8326 -2.9018 1.5144 11 7 2.0282 -3.1582 2.3284 12 6 1.6653 -3.4307 3.7256 13 1 0.8018 -2.8259 4.0026 14 6 1.3241 -4.9153 3.8862 15 6 1.0262 -5.2057 5.3596 16 8 2.1529 -4.8340 6.1561 17 6 2.4875 -3.4467 6.0822 18 1 1.6348 -2.8493 6.4050 19 6 3.6841 -3.1612 6.9919 20 9 4.0118 -1.8031 6.9189 21 9 3.3560 -3.4909 8.3113 22 9 4.7782 -3.9284 6.5778 23 6 2.8462 -3.0860 4.6383 24 6 1.6423 -3.6158 -0.8688 25 6 0.3189 -2.8698 -1.0505 26 1 -0.4849 0.8400 0.0040 27 1 0.2523 -2.0964 1.9646 28 1 0.2246 -3.8053 1.4673 29 1 2.5733 -3.9144 1.9423 30 1 0.4492 -5.1553 3.2820 31 1 2.1700 -5.5208 3.5607 32 1 0.8260 -6.2697 5.4872 33 1 0.1543 -4.6317 5.6730 34 1 3.7239 -3.6533 4.3285 35 1 3.0589 -2.0190 4.5715 36 1 2.4390 -3.4093 -1.5834 37 1 1.5959 -4.6404 -0.4995 38 1 -0.5981 -3.4035 -0.8007 39 1 0.2444 -2.1721 -1.8846 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348274647.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:48 Heat of formation + Delta-G solvation = -195.931427 kcal Electronic energy + Delta-G solvation = -24595.339939 eV Core-core repulsion = 20508.686441 eV Total energy + Delta-G solvation = -4086.653498 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.134 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -51.15705 -48.68626 -48.62907 -40.73312 -38.73084 -36.50462 -33.90770 -33.20292 -32.08648 -28.14979 -27.52227 -25.99410 -24.41721 -23.42035 -22.78969 -21.61029 -20.84182 -19.60396 -19.37301 -18.97928 -18.02837 -17.18594 -16.71905 -16.59689 -16.27592 -15.73352 -15.52873 -15.50258 -15.41395 -15.11349 -15.07054 -14.87139 -14.79725 -14.75257 -14.33741 -14.01743 -13.55489 -13.19332 -13.11437 -12.78838 -12.69035 -12.49106 -12.37584 -12.33462 -12.07980 -11.97505 -11.50144 -11.21546 -10.91983 -10.79858 -10.31606 -9.88931 -9.03321 -8.02185 -6.08003 1.43996 1.44426 1.45755 1.52071 2.28435 2.48862 2.67361 2.90915 3.27771 3.31049 3.44009 3.62358 3.71686 3.82542 3.88559 4.02520 4.14392 4.40335 4.41643 4.44275 4.56458 4.69044 4.71000 4.78801 4.81993 4.94866 5.01809 5.08745 5.14014 5.19310 5.32038 5.68247 5.73754 5.83148 5.90916 6.36541 6.51845 6.74137 6.94790 7.57131 9.06222 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.017348 B = 0.004537 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.663464 B = 6169.787382 C = 7227.993054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.025 3.975 3 Si 0.939 3.061 4 H -0.288 1.288 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.478 4.478 8 H 0.045 0.955 9 C 0.023 3.977 10 C 0.128 3.872 11 N -0.674 5.674 12 C 0.092 3.908 13 H 0.072 0.928 14 C -0.181 4.181 15 C 0.069 3.931 16 O -0.377 6.377 17 C 0.056 3.944 18 H 0.119 0.881 19 C 0.466 3.534 20 F -0.177 7.177 21 F -0.180 7.180 22 F -0.182 7.182 23 C -0.136 4.136 24 C -0.188 4.188 25 C -0.165 4.165 26 H 0.256 0.744 27 H 0.041 0.959 28 H 0.014 0.986 29 H 0.340 0.660 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.125 0.875 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.072 0.928 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.100 -10.301 13.396 17.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.174 4.174 3 Si 0.766 3.234 4 H -0.214 1.214 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.516 4.516 8 H 0.063 0.937 9 C 0.022 3.978 10 C -0.001 4.001 11 N -0.304 5.304 12 C -0.018 4.018 13 H 0.090 0.910 14 C -0.220 4.220 15 C -0.007 4.007 16 O -0.296 6.296 17 C -0.004 4.004 18 H 0.137 0.863 19 C 0.412 3.588 20 F -0.158 7.158 21 F -0.162 7.162 22 F -0.163 7.163 23 C -0.174 4.174 24 C -0.225 4.225 25 C -0.203 4.203 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.032 0.968 29 H 0.159 0.841 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.143 0.857 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.109 0.891 38 H 0.090 0.910 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.205 -9.615 13.617 16.815 hybrid contribution 0.025 0.584 -0.413 0.716 sum 2.230 -9.031 13.204 16.152 Atomic orbital electron populations 1.70087 1.06728 1.26584 1.51703 1.25501 0.95435 1.01295 0.95184 0.85916 0.78570 0.80379 0.78489 1.21383 1.20095 1.20235 1.20497 0.92136 0.90196 1.48817 0.93706 1.18980 0.98253 0.92827 0.87752 1.21147 0.89772 0.96041 0.93112 1.60135 1.21727 1.47707 1.00815 1.21504 0.96298 0.94851 0.89183 0.90966 1.22946 1.03398 0.97149 0.98514 1.22814 0.86856 1.02744 0.88298 1.87899 1.51573 1.21517 1.68642 1.23107 0.95071 0.87309 0.94882 0.86300 1.20253 0.84742 0.74016 0.79793 1.93211 1.93432 1.32933 1.96227 1.93189 1.92441 1.92316 1.38213 1.93181 1.57497 1.75624 1.90005 1.22132 1.00197 1.03533 0.91539 1.22935 0.98030 0.96426 1.05109 1.22425 0.92531 1.02395 1.02986 0.93545 0.94014 0.96766 0.84115 0.89978 0.90513 0.85731 0.91188 0.90132 0.89924 0.91017 0.89069 0.90962 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.41 12.86 21.45 0.28 -51.13 16 2 C 0.02 1.35 5.44 84.65 0.46 1.81 16 3 Si 0.94 43.82 29.54 68.60 2.03 45.84 16 4 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 6 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 7 C -0.48 -25.55 8.72 25.60 0.22 -25.33 16 8 H 0.04 2.45 7.82 -2.91 -0.02 2.42 16 9 C 0.02 1.05 1.55 -52.93 -0.08 0.97 16 10 C 0.13 5.20 5.34 86.30 0.46 5.66 16 11 N -0.67 -23.28 6.13 -490.94 -3.01 -26.29 16 12 C 0.09 2.48 2.55 45.03 0.11 2.60 16 13 H 0.07 2.05 7.72 -2.38 -0.02 2.03 16 14 C -0.18 -3.73 5.41 30.69 0.17 -3.57 16 15 C 0.07 1.17 6.84 72.02 0.49 1.67 16 16 O -0.38 -8.15 10.30 -148.98 -1.53 -9.69 16 17 C 0.06 1.23 2.62 30.62 0.08 1.31 16 18 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 19 C 0.47 10.93 2.85 71.98 0.21 11.14 16 20 F -0.18 -4.33 16.85 44.97 0.76 -3.57 16 21 F -0.18 -4.25 17.26 44.97 0.78 -3.47 16 22 F -0.18 -4.66 16.70 44.97 0.75 -3.91 16 23 C -0.14 -3.44 4.78 30.68 0.15 -3.30 16 24 C -0.19 -7.55 9.95 30.59 0.30 -7.25 16 25 C -0.17 -7.48 9.40 30.60 0.29 -7.19 16 26 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 27 H 0.04 1.95 7.93 -2.38 -0.02 1.93 16 28 H 0.01 0.52 7.61 -2.39 -0.02 0.50 16 29 H 0.34 10.91 8.50 -89.70 -0.76 10.15 16 30 H 0.08 1.67 7.67 -2.38 -0.02 1.65 16 31 H 0.08 1.59 8.09 -2.39 -0.02 1.57 16 32 H 0.12 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.08 2.11 7.74 -2.39 -0.02 2.09 16 35 H 0.08 2.32 7.88 -2.39 -0.02 2.30 16 36 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 37 H 0.09 3.09 8.14 -2.38 -0.02 3.07 16 38 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 39 H 0.05 2.75 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -59.17 332.68 3.20 -55.96 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: 0.30 Total: 17.76 kcal Atomic # 6 Polarization: -24.36 SS G_CDS: 2.86 Total: -21.50 kcal Atomic # 7 Polarization: -74.69 SS G_CDS: -2.73 Total: -77.43 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: -1.53 Total: -9.69 kcal Atomic # 9 Polarization: -13.24 SS G_CDS: 2.28 Total: -10.95 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -59.17 3.20 -55.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348274647.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.967 kcal (2) G-P(sol) polarization free energy of solvation -59.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds