Wall clock time and date at job start Tue Mar 31 2020 06:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99982 * 2 1 4 4 H 1.48504 * 109.46730 * 239.99986 * 3 2 1 5 5 H 1.48507 * 109.47027 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47193 * 119.99761 * 3 2 1 7 7 C 1.37879 * 120.00111 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99934 * 173.49274 * 7 2 1 9 9 C 1.50703 * 119.99842 * 353.49312 * 7 2 1 10 10 C 1.53006 * 115.54758 * 85.33772 * 9 7 2 11 11 N 1.46893 * 109.47080 * 65.05144 * 10 9 7 12 12 C 1.46899 * 111.00131 * 185.40239 * 11 10 9 13 13 H 1.09001 * 109.61392 * 34.78076 * 12 11 10 14 14 C 1.53167 * 109.54482 * 274.55637 * 12 11 10 15 15 C 1.53098 * 109.16294 * 183.15064 * 14 12 11 16 16 O 1.42894 * 109.41463 * 57.60792 * 15 14 12 17 17 C 1.42904 * 114.10191 * 298.83960 * 16 15 14 18 18 H 1.08997 * 109.49127 * 301.17320 * 17 16 15 19 19 C 1.52998 * 109.48202 * 181.13952 * 17 16 15 20 20 F 1.39894 * 109.47296 * 300.05630 * 19 17 16 21 21 F 1.39895 * 109.47173 * 60.06436 * 19 17 16 22 22 F 1.39905 * 109.46571 * 180.02562 * 19 17 16 23 23 C 1.53098 * 109.41021 * 61.16040 * 17 16 15 24 24 C 1.52994 * 117.49976 * 231.00915 * 9 7 2 25 25 C 1.52996 * 117.49880 * 299.67114 * 9 7 2 26 26 H 0.97003 * 120.00222 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47193 * 305.05034 * 10 9 7 28 28 H 1.09004 * 109.46689 * 185.04958 * 10 9 7 29 29 H 1.00897 * 111.00087 * 61.44655 * 11 10 9 30 30 H 1.08998 * 109.52661 * 63.24794 * 14 12 11 31 31 H 1.09001 * 109.57661 * 303.08691 * 14 12 11 32 32 H 1.08995 * 109.48245 * 297.62393 * 15 14 12 33 33 H 1.09000 * 109.47881 * 177.58953 * 15 14 12 34 34 H 1.08995 * 109.52235 * 62.30065 * 23 17 16 35 35 H 1.09002 * 109.52086 * 182.49136 * 23 17 16 36 36 H 1.09005 * 117.49967 * 215.00787 * 24 9 7 37 37 H 1.09000 * 117.49683 * 0.02562 * 24 9 7 38 38 H 1.08999 * 117.50035 * 359.97145 * 25 9 7 39 39 H 1.09003 * 117.50158 * 144.99830 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0792 -1.1971 -0.1055 9 6 1.2583 -2.4949 0.1490 10 6 0.6997 -3.0868 -1.1466 11 7 1.8099 -3.4589 -2.0335 12 6 1.3117 -3.9124 -3.3389 13 1 0.4193 -3.3465 -3.6067 14 6 0.9703 -5.4038 -3.2672 15 6 0.5271 -5.8850 -4.6514 16 8 1.5655 -5.6280 -5.5987 17 6 1.8945 -4.2448 -5.7430 18 1 1.0091 -3.6911 -6.0551 19 6 2.9920 -4.0887 -6.7975 20 9 4.1282 -4.7998 -6.3970 21 9 2.5366 -4.5886 -8.0222 22 9 3.3142 -2.7345 -6.9382 23 6 2.3927 -3.6978 -4.4028 24 6 1.7491 -3.4728 1.2184 25 6 0.4443 -2.7003 1.4281 26 1 -0.4850 0.8401 0.0004 27 1 0.0708 -2.3473 -1.6424 28 1 0.1067 -3.9718 -0.9157 29 1 2.3945 -4.1613 -1.6058 30 1 0.1626 -5.5587 -2.5519 31 1 1.8496 -5.9649 -2.9509 32 1 -0.3764 -5.3529 -4.9491 33 1 0.3238 -6.9553 -4.6162 34 1 3.3015 -4.2236 -4.1099 35 1 2.6023 -2.6324 -4.4994 36 1 1.6741 -4.5379 0.9989 37 1 2.6115 -3.1751 1.8148 38 1 0.4489 -1.8948 2.1624 39 1 -0.4892 -3.2572 1.3466 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348274648.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:50 Heat of formation + Delta-G solvation = -179.464989 kcal Electronic energy + Delta-G solvation = -24566.178428 eV Core-core repulsion = 20480.238968 eV Total energy + Delta-G solvation = -4085.939460 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.134 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.15302 -47.68254 -47.61496 -39.73995 -37.10801 -35.17569 -32.24258 -31.86408 -30.86568 -27.00450 -25.66635 -24.53129 -23.39670 -22.28726 -21.10370 -20.50430 -19.03763 -18.61262 -18.32426 -17.98184 -16.33151 -16.14935 -15.67643 -15.05384 -14.66438 -14.51262 -14.46928 -14.36972 -14.17838 -14.05841 -13.83257 -13.76338 -13.72800 -13.41552 -12.90920 -12.64288 -12.23709 -11.78162 -11.54738 -11.48291 -11.21523 -11.00422 -10.91783 -10.72670 -10.47011 -10.43685 -10.20296 -9.97339 -9.45357 -8.82727 -8.38610 -8.08971 -7.64610 -5.97281 -3.98671 2.40117 3.22551 3.35612 3.39549 3.43321 3.67999 3.90010 4.39677 4.46049 4.52877 4.68844 4.78143 4.80529 5.00390 5.15047 5.28143 5.32823 5.38527 5.53338 5.61383 5.73368 5.84970 6.07947 6.17879 6.19006 6.32208 6.45255 6.56822 6.70738 6.71292 6.83232 7.09346 7.44955 7.52880 7.85610 7.96016 8.05929 8.53504 9.00419 9.64738 11.12601 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.017770 B = 0.004411 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.328984 B = 6345.548172 C = 7364.686316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.068 3.932 3 Si 0.888 3.112 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.470 4.470 8 H 0.059 0.941 9 C 0.051 3.949 10 C 0.109 3.891 11 N -0.660 5.660 12 C 0.093 3.907 13 H 0.080 0.920 14 C -0.190 4.190 15 C 0.070 3.930 16 O -0.368 6.368 17 C 0.050 3.950 18 H 0.101 0.899 19 C 0.466 3.534 20 F -0.175 7.175 21 F -0.180 7.180 22 F -0.173 7.173 23 C -0.141 4.141 24 C -0.215 4.215 25 C -0.158 4.158 26 H 0.258 0.742 27 H 0.076 0.924 28 H -0.005 1.005 29 H 0.334 0.666 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.846 -10.604 -11.141 15.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.134 4.134 3 Si 0.716 3.284 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.508 4.508 8 H 0.077 0.923 9 C 0.051 3.949 10 C -0.019 4.019 11 N -0.288 5.288 12 C -0.018 4.018 13 H 0.098 0.902 14 C -0.230 4.230 15 C -0.007 4.007 16 O -0.287 6.287 17 C -0.010 4.010 18 H 0.119 0.881 19 C 0.411 3.589 20 F -0.156 7.156 21 F -0.162 7.162 22 F -0.155 7.155 23 C -0.179 4.179 24 C -0.253 4.253 25 C -0.196 4.196 26 H 0.067 0.933 27 H 0.095 0.905 28 H 0.013 0.987 29 H 0.152 0.848 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.119 0.881 34 H 0.103 0.897 35 H 0.115 0.885 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.911 -9.943 -11.460 15.200 hybrid contribution 0.023 0.237 0.281 0.368 sum 0.934 -9.706 -11.179 14.835 Atomic orbital electron populations 1.69991 1.05814 1.26299 1.50355 1.24927 0.94750 0.98715 0.94998 0.86738 0.79665 0.83405 0.78623 1.20227 1.21538 1.20440 1.20262 0.92824 0.88373 1.49353 0.92303 1.18823 0.97169 0.93762 0.85183 1.21586 0.90507 0.95710 0.94146 1.60269 1.21717 1.44488 1.02364 1.21481 0.96436 0.92120 0.91770 0.90225 1.23067 1.03011 0.99108 0.97796 1.22638 0.88875 1.01649 0.87510 1.87893 1.57438 1.21237 1.62141 1.23171 0.96120 0.86705 0.95053 0.88106 1.20164 0.83065 0.73827 0.81820 1.93193 1.53602 1.78448 1.90368 1.93188 1.88781 1.87479 1.46739 1.93219 1.93393 1.32828 1.96012 1.22249 1.00591 1.03536 0.91568 1.22992 0.98539 0.95359 1.08387 1.22517 0.91951 1.01163 1.03983 0.93261 0.90524 0.98661 0.84848 0.90380 0.90629 0.92480 0.88115 0.89721 0.88525 0.92239 0.90513 0.90067 0.92204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.64 12.92 55.43 0.72 -23.93 16 2 C 0.07 1.83 5.39 -17.82 -0.10 1.73 16 3 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.47 -12.47 8.74 -34.44 -0.30 -12.77 16 8 H 0.06 1.59 7.82 -52.49 -0.41 1.18 16 9 C 0.05 1.20 1.55 -155.66 -0.24 0.96 16 10 C 0.11 2.25 5.35 -3.83 -0.02 2.23 16 11 N -0.66 -11.74 6.13 -106.54 -0.65 -12.40 16 12 C 0.09 1.32 2.55 -67.53 -0.17 1.15 16 13 H 0.08 1.17 7.72 -51.93 -0.40 0.77 16 14 C -0.19 -2.22 5.40 -26.59 -0.14 -2.36 16 15 C 0.07 0.71 6.84 37.21 0.25 0.96 16 16 O -0.37 -4.46 10.29 -35.23 -0.36 -4.83 16 17 C 0.05 0.59 2.62 -26.68 -0.07 0.52 16 18 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 19 C 0.47 5.78 2.85 37.16 0.11 5.88 16 20 F -0.17 -2.34 16.70 2.25 0.04 -2.30 16 21 F -0.18 -2.27 17.26 2.25 0.04 -2.23 16 22 F -0.17 -2.20 16.85 2.25 0.04 -2.16 16 23 C -0.14 -1.87 4.78 -26.59 -0.13 -2.00 16 24 C -0.22 -4.51 9.96 -26.70 -0.27 -4.78 16 25 C -0.16 -3.61 9.42 -26.70 -0.25 -3.86 16 26 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 27 H 0.08 1.79 7.92 -51.93 -0.41 1.38 16 28 H 0.00 -0.09 7.64 -51.93 -0.40 -0.49 16 29 H 0.33 5.63 8.49 -39.29 -0.33 5.29 16 30 H 0.08 0.91 7.69 -51.93 -0.40 0.51 16 31 H 0.08 0.89 8.09 -51.93 -0.42 0.47 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 1.15 7.74 -51.93 -0.40 0.75 16 35 H 0.10 1.37 7.88 -51.93 -0.41 0.96 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 38 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 39 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 332.77 15.07 5.01 5.01 Total: -1.00 -27.83 332.77 -7.20 -35.03 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -5.68 Total: 4.02 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: -1.33 Total: -12.33 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: 0.06 Total: -36.32 kcal Atomic # 8 Polarization: -4.46 SS G_CDS: -0.36 Total: -4.83 kcal Atomic # 9 Polarization: -6.82 SS G_CDS: 0.11 Total: -6.70 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -27.83 -7.20 -35.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348274648.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.438 kcal (2) G-P(sol) polarization free energy of solvation -27.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds