Wall clock time and date at job start Tue Mar 31 2020 06:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99982 * 2 1 4 4 H 1.48504 * 109.46730 * 239.99986 * 3 2 1 5 5 H 1.48507 * 109.47027 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47193 * 119.99761 * 3 2 1 7 7 C 1.37879 * 120.00111 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99934 * 173.49274 * 7 2 1 9 9 C 1.50703 * 119.99842 * 353.49312 * 7 2 1 10 10 C 1.53006 * 115.54758 * 85.33772 * 9 7 2 11 11 N 1.46893 * 109.47080 * 65.05144 * 10 9 7 12 12 C 1.46899 * 111.00131 * 185.40239 * 11 10 9 13 13 H 1.09001 * 109.61392 * 34.78076 * 12 11 10 14 14 C 1.53167 * 109.54482 * 274.55637 * 12 11 10 15 15 C 1.53098 * 109.16294 * 183.15064 * 14 12 11 16 16 O 1.42894 * 109.41463 * 57.60792 * 15 14 12 17 17 C 1.42904 * 114.10191 * 298.83960 * 16 15 14 18 18 H 1.08997 * 109.49127 * 301.17320 * 17 16 15 19 19 C 1.52998 * 109.48202 * 181.13952 * 17 16 15 20 20 F 1.39894 * 109.47296 * 300.05630 * 19 17 16 21 21 F 1.39895 * 109.47173 * 60.06436 * 19 17 16 22 22 F 1.39905 * 109.46571 * 180.02562 * 19 17 16 23 23 C 1.53098 * 109.41021 * 61.16040 * 17 16 15 24 24 C 1.52994 * 117.49976 * 231.00915 * 9 7 2 25 25 C 1.52996 * 117.49880 * 299.67114 * 9 7 2 26 26 H 0.97003 * 120.00222 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47193 * 305.05034 * 10 9 7 28 28 H 1.09004 * 109.46689 * 185.04958 * 10 9 7 29 29 H 1.00897 * 111.00087 * 61.44655 * 11 10 9 30 30 H 1.08998 * 109.52661 * 63.24794 * 14 12 11 31 31 H 1.09001 * 109.57661 * 303.08691 * 14 12 11 32 32 H 1.08995 * 109.48245 * 297.62393 * 15 14 12 33 33 H 1.09000 * 109.47881 * 177.58953 * 15 14 12 34 34 H 1.08995 * 109.52235 * 62.30065 * 23 17 16 35 35 H 1.09002 * 109.52086 * 182.49136 * 23 17 16 36 36 H 1.09005 * 117.49967 * 215.00787 * 24 9 7 37 37 H 1.09000 * 117.49683 * 0.02562 * 24 9 7 38 38 H 1.08999 * 117.50035 * 359.97145 * 25 9 7 39 39 H 1.09003 * 117.50158 * 144.99830 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0792 -1.1971 -0.1055 9 6 1.2583 -2.4949 0.1490 10 6 0.6997 -3.0868 -1.1466 11 7 1.8099 -3.4589 -2.0335 12 6 1.3117 -3.9124 -3.3389 13 1 0.4193 -3.3465 -3.6067 14 6 0.9703 -5.4038 -3.2672 15 6 0.5271 -5.8850 -4.6514 16 8 1.5655 -5.6280 -5.5987 17 6 1.8945 -4.2448 -5.7430 18 1 1.0091 -3.6911 -6.0551 19 6 2.9920 -4.0887 -6.7975 20 9 4.1282 -4.7998 -6.3970 21 9 2.5366 -4.5886 -8.0222 22 9 3.3142 -2.7345 -6.9382 23 6 2.3927 -3.6978 -4.4028 24 6 1.7491 -3.4728 1.2184 25 6 0.4443 -2.7003 1.4281 26 1 -0.4850 0.8401 0.0004 27 1 0.0708 -2.3473 -1.6424 28 1 0.1067 -3.9718 -0.9157 29 1 2.3945 -4.1613 -1.6058 30 1 0.1626 -5.5587 -2.5519 31 1 1.8496 -5.9649 -2.9509 32 1 -0.3764 -5.3529 -4.9491 33 1 0.3238 -6.9553 -4.6162 34 1 3.3015 -4.2236 -4.1099 35 1 2.6023 -2.6324 -4.4994 36 1 1.6741 -4.5379 0.9989 37 1 2.6115 -3.1751 1.8148 38 1 0.4489 -1.8948 2.1624 39 1 -0.4892 -3.2572 1.3466 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348274648.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:50 Heat of formation + Delta-G solvation = -195.835623 kcal Electronic energy + Delta-G solvation = -24566.888312 eV Core-core repulsion = 20480.238968 eV Total energy + Delta-G solvation = -4086.649344 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.134 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -51.15532 -48.68275 -48.62890 -40.73102 -38.72899 -36.50587 -33.90104 -33.19893 -32.08397 -28.14097 -27.51576 -25.99842 -24.41240 -23.41817 -22.80505 -21.60906 -20.83414 -19.60171 -19.36951 -18.97649 -18.01791 -17.18341 -16.71932 -16.59468 -16.28132 -15.73247 -15.52565 -15.50499 -15.41100 -15.10746 -15.06797 -14.87121 -14.79495 -14.75059 -14.34341 -14.01305 -13.51290 -13.19989 -13.10906 -12.85103 -12.65089 -12.48909 -12.37699 -12.33119 -12.07705 -11.98282 -11.51624 -11.27986 -10.89588 -10.70070 -10.34393 -9.89627 -9.02795 -8.02715 -6.07979 1.44392 1.44724 1.45024 1.51532 2.28686 2.48624 2.67649 2.91264 3.27680 3.30753 3.44271 3.62260 3.71902 3.82948 3.88861 4.02800 4.14759 4.40603 4.41751 4.44712 4.57331 4.69313 4.71102 4.79002 4.82220 4.95122 5.01634 5.08277 5.14246 5.19347 5.30851 5.66483 5.77485 5.83401 5.90506 6.36697 6.52391 6.74714 6.95151 7.57149 9.06001 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.017770 B = 0.004411 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.328984 B = 6345.548172 C = 7364.686316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.024 3.976 3 Si 0.939 3.061 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.479 4.479 8 H 0.046 0.954 9 C 0.023 3.977 10 C 0.128 3.872 11 N -0.674 5.674 12 C 0.092 3.908 13 H 0.072 0.928 14 C -0.181 4.181 15 C 0.069 3.931 16 O -0.377 6.377 17 C 0.056 3.944 18 H 0.119 0.881 19 C 0.466 3.534 20 F -0.182 7.182 21 F -0.180 7.180 22 F -0.177 7.177 23 C -0.135 4.135 24 C -0.188 4.188 25 C -0.166 4.166 26 H 0.256 0.744 27 H 0.042 0.958 28 H 0.013 0.987 29 H 0.340 0.660 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.125 0.875 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.054 0.946 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.845 -11.987 -11.736 16.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.175 4.175 3 Si 0.766 3.234 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.518 4.518 8 H 0.064 0.936 9 C 0.022 3.978 10 C -0.001 4.001 11 N -0.304 5.304 12 C -0.018 4.018 13 H 0.090 0.910 14 C -0.220 4.220 15 C -0.007 4.007 16 O -0.296 6.296 17 C -0.004 4.004 18 H 0.137 0.863 19 C 0.412 3.588 20 F -0.163 7.163 21 F -0.162 7.162 22 F -0.158 7.158 23 C -0.174 4.174 24 C -0.225 4.225 25 C -0.204 4.204 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.031 0.969 29 H 0.158 0.842 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.143 0.857 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.109 0.891 37 H 0.091 0.909 38 H 0.073 0.927 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.922 -11.337 -12.059 16.577 hybrid contribution 0.058 0.642 0.469 0.797 sum 0.980 -10.696 -11.590 15.801 Atomic orbital electron populations 1.70083 1.06747 1.26606 1.51572 1.25513 0.95440 1.01311 0.95191 0.85920 0.78588 0.80406 0.78477 1.20172 1.21358 1.20163 1.20501 0.92456 0.90149 1.48649 0.93602 1.18974 0.98117 0.93873 0.86786 1.21167 0.90800 0.95253 0.92896 1.60127 1.21285 1.45723 1.03241 1.21497 0.96285 0.93977 0.90041 0.90979 1.22943 1.03204 0.96747 0.99114 1.22817 0.88660 1.03282 0.85947 1.87897 1.58165 1.20986 1.62597 1.23109 0.96402 0.87059 0.93795 0.86312 1.20249 0.82992 0.73561 0.81995 1.93178 1.54087 1.78601 1.90440 1.93187 1.88739 1.87463 1.46769 1.93214 1.93445 1.33097 1.96046 1.22133 1.00207 1.02721 0.92316 1.22969 0.97042 0.96513 1.05985 1.22431 0.93534 1.01255 1.03212 0.93540 0.93897 0.96903 0.84161 0.90022 0.90506 0.91176 0.85732 0.90157 0.89928 0.89086 0.90940 0.92730 0.90882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.32 12.92 21.45 0.28 -51.05 16 2 C 0.02 1.33 5.39 84.66 0.46 1.79 16 3 Si 0.94 43.74 29.54 68.60 2.03 45.77 16 4 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 5 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 6 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 7 C -0.48 -25.60 8.74 25.60 0.22 -25.37 16 8 H 0.05 2.51 7.82 -2.92 -0.02 2.48 16 9 C 0.02 1.08 1.55 -52.93 -0.08 1.00 16 10 C 0.13 5.20 5.35 86.31 0.46 5.66 16 11 N -0.67 -23.37 6.13 -490.97 -3.01 -26.38 16 12 C 0.09 2.50 2.55 45.03 0.11 2.62 16 13 H 0.07 2.06 7.72 -2.39 -0.02 2.05 16 14 C -0.18 -3.75 5.40 30.68 0.17 -3.59 16 15 C 0.07 1.18 6.84 72.01 0.49 1.67 16 16 O -0.38 -8.19 10.29 -148.98 -1.53 -9.72 16 17 C 0.06 1.23 2.62 30.63 0.08 1.31 16 18 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 19 C 0.47 10.96 2.85 71.98 0.21 11.17 16 20 F -0.18 -4.67 16.70 44.97 0.75 -3.92 16 21 F -0.18 -4.26 17.26 44.97 0.78 -3.48 16 22 F -0.18 -4.34 16.85 44.97 0.76 -3.58 16 23 C -0.14 -3.45 4.78 30.69 0.15 -3.31 16 24 C -0.19 -7.54 9.96 30.62 0.30 -7.23 16 25 C -0.17 -7.50 9.42 30.62 0.29 -7.21 16 26 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 27 H 0.04 2.02 7.92 -2.39 -0.02 2.00 16 28 H 0.01 0.48 7.64 -2.38 -0.02 0.46 16 29 H 0.34 10.93 8.49 -89.70 -0.76 10.17 16 30 H 0.08 1.67 7.69 -2.39 -0.02 1.65 16 31 H 0.08 1.60 8.09 -2.39 -0.02 1.58 16 32 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.08 2.11 7.74 -2.39 -0.02 2.09 16 35 H 0.08 2.33 7.88 -2.39 -0.02 2.31 16 36 H 0.09 3.08 8.14 -2.38 -0.02 3.06 16 37 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 38 H 0.05 2.72 8.14 -2.39 -0.02 2.70 16 39 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 Total: -1.00 -59.07 332.77 3.20 -55.87 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 0.30 Total: 17.98 kcal Atomic # 6 Polarization: -24.36 SS G_CDS: 2.86 Total: -21.50 kcal Atomic # 7 Polarization: -74.70 SS G_CDS: -2.73 Total: -77.43 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: -1.53 Total: -9.72 kcal Atomic # 9 Polarization: -13.26 SS G_CDS: 2.28 Total: -10.98 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -59.07 3.20 -55.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348274648.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.967 kcal (2) G-P(sol) polarization free energy of solvation -59.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds