Wall clock time and date at job start Tue Mar 31 2020 06:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 110.05514 * 2 1 4 4 C 1.53774 * 109.93242 * 238.96450 * 2 1 3 5 5 H 1.08992 * 110.50368 * 120.59502 * 4 2 1 6 6 C 1.53002 * 110.17131 * 358.36554 * 4 2 1 7 7 F 1.39905 * 109.47186 * 302.59682 * 6 4 2 8 8 F 1.39898 * 109.47188 * 62.59291 * 6 4 2 9 9 F 1.39900 * 109.47456 * 182.59602 * 6 4 2 10 10 C 1.54617 * 105.02090 * 239.56953 * 4 2 1 11 11 C 1.54938 * 102.83750 * 337.95108 * 10 4 2 12 12 N 1.47487 * 109.91160 * 121.18990 * 2 1 3 13 13 C 1.34768 * 127.03484 * 324.84157 * 12 2 1 14 14 O 1.21282 * 120.00451 * 359.71197 * 13 12 2 15 15 C 1.50699 * 120.00183 * 179.70963 * 13 12 2 16 16 C 1.52997 * 109.47563 * 180.02562 * 15 13 12 17 17 C 1.50699 * 109.47563 * 179.97438 * 16 15 13 18 18 H 1.08005 * 119.99852 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00598 * 179.97438 * 17 16 15 20 20 N 1.31523 * 119.99687 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00352 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47042 * 359.97438 * 21 19 17 23 23 H 1.48507 * 109.47039 * 240.00150 * 21 19 17 24 24 H 1.48499 * 109.47132 * 120.00595 * 21 19 17 25 25 H 1.09000 * 109.47151 * 305.72267 * 1 2 3 26 26 H 1.08994 * 109.47555 * 65.72716 * 1 2 3 27 27 H 1.09009 * 109.47289 * 185.72472 * 1 2 3 28 28 H 1.09000 * 109.47172 * 179.74390 * 3 2 1 29 29 H 1.09009 * 109.46888 * 299.73572 * 3 2 1 30 30 H 1.08991 * 109.47466 * 59.73565 * 3 2 1 31 31 H 1.09003 * 110.73372 * 219.61678 * 10 4 2 32 32 H 1.08996 * 110.89840 * 96.36567 * 10 4 2 33 33 H 1.09005 * 110.66518 * 278.94020 * 11 10 4 34 34 H 1.09001 * 110.66209 * 155.82142 * 11 10 4 35 35 H 1.09004 * 109.47154 * 59.99881 * 15 13 12 36 36 H 1.09003 * 109.47072 * 300.00191 * 15 13 12 37 37 H 1.09004 * 109.46993 * 59.99770 * 16 15 13 38 38 H 1.08996 * 109.47421 * 300.00234 * 16 15 13 39 39 H 0.97000 * 119.99635 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0542 -0.7453 -1.2387 5 1 2.6729 -0.0861 -1.8475 6 6 0.8845 -1.2885 -2.0619 7 9 0.1001 -2.1260 -1.2615 8 9 0.1056 -0.2227 -2.5250 9 9 1.3781 -2.0134 -3.1518 10 6 2.9019 -1.9099 -0.6767 11 6 3.2621 -1.4175 0.7475 12 7 2.0323 -0.7181 1.1863 13 6 1.4818 -0.7386 2.4162 14 8 0.4651 -0.1149 2.6360 15 6 2.1294 -1.5364 3.5185 16 6 1.3100 -1.3913 4.8023 17 6 1.9572 -2.1896 5.9045 18 1 2.8629 -2.7447 5.7089 19 6 1.3940 -2.2106 7.1628 20 7 0.2915 -1.5343 7.4011 21 14 2.1968 -3.1996 8.5290 22 1 3.4170 -3.8656 8.0068 23 1 1.2447 -4.2276 9.0212 24 1 2.5664 -2.2926 9.6452 25 1 -0.3633 0.6000 0.8343 26 1 -0.3634 0.4224 -0.9367 27 1 -0.3634 -1.0226 0.1025 28 1 3.1446 1.4261 0.0046 29 1 1.7004 1.9533 -0.8924 30 1 1.6928 1.9561 0.8875 31 1 3.8021 -2.0553 -1.2740 32 1 2.3180 -2.8291 -0.6311 33 1 4.1056 -0.7279 0.7143 34 1 3.4793 -2.2611 1.4027 35 1 3.1406 -1.1667 3.6887 36 1 2.1703 -2.5870 3.2308 37 1 0.2989 -1.7612 4.6318 38 1 1.2686 -0.3408 5.0903 39 1 -0.1251 -1.0204 6.6917 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360453073.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:28 Heat of formation + Delta-G solvation = -187.365924 kcal Electronic energy + Delta-G solvation = -25206.495004 eV Core-core repulsion = 21120.212934 eV Total energy + Delta-G solvation = -4086.282070 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.134 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.52095 -47.94143 -47.85348 -40.41187 -37.69994 -33.88765 -33.00510 -32.15411 -30.62401 -28.05356 -27.12734 -25.26831 -24.06052 -22.99737 -21.86626 -20.42023 -18.80627 -18.78002 -18.18060 -17.37321 -16.98199 -16.21027 -16.00759 -15.46949 -14.88607 -14.67733 -14.44999 -14.41257 -14.18013 -13.96767 -13.72821 -13.50095 -13.45254 -13.24834 -13.10405 -12.85182 -12.24982 -12.20381 -11.92084 -11.71537 -11.46312 -11.38931 -11.35623 -11.09327 -10.84773 -10.81191 -10.12737 -10.12395 -9.96224 -9.13302 -8.63699 -8.53592 -8.28322 -6.32353 -4.02658 2.44713 3.04185 3.07370 3.44852 3.49794 3.51051 3.55711 3.61875 3.70722 4.23997 4.31802 4.56650 4.63110 4.79809 4.90249 4.97665 5.13844 5.24386 5.30830 5.44526 5.45546 5.49891 5.65740 5.71090 5.74448 5.89442 6.03079 6.07114 6.12277 6.34654 6.60504 6.72910 7.50667 7.55787 7.73835 8.18755 8.49631 8.62063 8.91789 9.71149 11.08706 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.029914 B = 0.003726 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.792131 B = 7513.374959 C = 7675.634149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.171 3.829 3 C -0.151 4.151 4 C -0.145 4.145 5 H 0.127 0.873 6 C 0.463 3.537 7 F -0.171 7.171 8 F -0.177 7.177 9 F -0.184 7.184 10 C -0.129 4.129 11 C 0.103 3.897 12 N -0.623 5.623 13 C 0.533 3.467 14 O -0.526 6.526 15 C -0.117 4.117 16 C 0.024 3.976 17 C -0.608 4.608 18 H 0.050 0.950 19 C 0.015 3.985 20 N -0.912 5.912 21 Si 1.075 2.925 22 H -0.290 1.290 23 H -0.287 1.287 24 H -0.287 1.287 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.015 0.985 38 H 0.014 0.986 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.219 1.410 -22.604 23.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C 0.086 3.914 3 C -0.210 4.210 4 C -0.166 4.166 5 H 0.145 0.855 6 C 0.409 3.591 7 F -0.152 7.152 8 F -0.158 7.158 9 F -0.165 7.165 10 C -0.167 4.167 11 C -0.021 4.021 12 N -0.360 5.360 13 C 0.325 3.675 14 O -0.401 6.401 15 C -0.157 4.157 16 C -0.013 4.013 17 C -0.646 4.646 18 H 0.068 0.932 19 C -0.189 4.189 20 N -0.548 5.548 21 Si 0.904 3.096 22 H -0.216 1.216 23 H -0.214 1.214 24 H -0.214 1.214 25 H 0.108 0.892 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.114 0.886 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.111 0.889 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.033 0.967 38 H 0.033 0.967 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.427 1.321 -20.767 21.779 hybrid contribution 0.074 0.326 -1.936 1.965 sum 6.501 1.647 -22.704 23.673 Atomic orbital electron populations 1.23289 0.92835 1.05844 1.05293 1.20701 0.95774 0.91809 0.83114 1.22153 1.01103 0.94554 1.03142 1.23539 0.94655 1.00691 0.97666 0.85484 1.20312 0.84481 0.75887 0.78448 1.93134 1.76521 1.72914 1.72646 1.93060 1.77140 1.56174 1.89419 1.93181 1.87505 1.78873 1.56939 1.22818 1.00280 0.96785 0.96834 1.22478 0.88014 0.97424 0.94146 1.49135 1.26804 1.50898 1.09197 1.21271 0.84052 0.81036 0.81177 1.90637 1.24390 1.44008 1.81018 1.21720 1.00914 0.98684 0.94343 1.19032 0.94990 0.97368 0.89941 1.22067 1.12650 1.33104 0.96815 0.93210 1.25842 0.95887 0.97605 0.99560 1.70678 1.18225 1.28830 1.37027 0.83468 0.75100 0.75868 0.75186 1.21562 1.21356 1.21357 0.89221 0.90044 0.89986 0.92128 0.91490 0.91185 0.88587 0.89482 0.90571 0.88850 0.90146 0.90142 0.96704 0.96725 0.91671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.10 6.40 37.16 0.24 -2.86 16 2 C 0.17 2.09 0.92 -130.88 -0.12 1.97 16 3 C -0.15 -1.63 8.60 37.16 0.32 -1.31 16 4 C -0.15 -1.31 2.65 -89.37 -0.24 -1.55 16 5 H 0.13 0.81 7.68 -51.93 -0.40 0.41 16 6 C 0.46 4.82 2.32 37.16 0.09 4.91 16 7 F -0.17 -2.17 13.39 2.25 0.03 -2.14 16 8 F -0.18 -1.90 14.31 2.25 0.03 -1.87 16 9 F -0.18 -1.82 17.12 2.25 0.04 -1.79 16 10 C -0.13 -1.04 6.34 -24.86 -0.16 -1.19 16 11 C 0.10 1.01 6.94 -2.13 -0.01 1.00 16 12 N -0.62 -8.85 2.83 -155.23 -0.44 -9.29 16 13 C 0.53 10.22 7.67 -10.99 -0.08 10.14 16 14 O -0.53 -12.02 13.86 5.56 0.08 -11.94 16 15 C -0.12 -2.38 4.57 -27.89 -0.13 -2.51 16 16 C 0.02 0.65 3.57 -27.89 -0.10 0.55 16 17 C -0.61 -17.42 9.11 -34.44 -0.31 -17.73 16 18 H 0.05 1.36 7.74 -52.48 -0.41 0.96 16 19 C 0.02 0.45 5.46 -17.82 -0.10 0.36 16 20 N -0.91 -28.84 13.65 55.43 0.76 -28.08 16 21 Si 1.08 25.52 29.90 -169.99 -5.08 20.43 16 22 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 25 H 0.09 1.54 6.34 -51.93 -0.33 1.21 16 26 H 0.08 1.02 5.15 -51.93 -0.27 0.75 16 27 H 0.08 1.30 5.57 -51.92 -0.29 1.01 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.78 7.35 -51.93 -0.38 0.40 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 0.91 7.23 -51.93 -0.38 0.53 16 35 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 36 H 0.08 1.52 7.91 -51.93 -0.41 1.11 16 37 H 0.01 0.43 7.97 -51.93 -0.41 0.01 16 38 H 0.01 0.42 7.96 -51.93 -0.41 0.00 16 39 H 0.27 8.76 7.22 -40.82 -0.29 8.47 16 LS Contribution 317.91 15.07 4.79 4.79 Total: -1.00 -33.95 317.91 -5.72 -39.67 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -5.31 Total: -1.56 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -0.61 Total: -8.22 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.32 Total: -37.37 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.08 Total: -11.94 kcal Atomic # 9 Polarization: -5.90 SS G_CDS: 0.10 Total: -5.79 kcal Atomic # 14 Polarization: 25.52 SS G_CDS: -5.08 Total: 20.43 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.95 -5.72 -39.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360453073.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.697 kcal (2) G-P(sol) polarization free energy of solvation -33.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds