Wall clock time and date at job start Tue Mar 31 2020 06:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 110.05514 * 2 1 4 4 C 1.53774 * 109.93242 * 238.96450 * 2 1 3 5 5 H 1.08992 * 110.50368 * 120.59502 * 4 2 1 6 6 C 1.53002 * 110.17131 * 358.36554 * 4 2 1 7 7 F 1.39905 * 109.47186 * 302.59682 * 6 4 2 8 8 F 1.39898 * 109.47188 * 62.59291 * 6 4 2 9 9 F 1.39900 * 109.47456 * 182.59602 * 6 4 2 10 10 C 1.54617 * 105.02090 * 239.56953 * 4 2 1 11 11 C 1.54938 * 102.83750 * 337.95108 * 10 4 2 12 12 N 1.47487 * 109.91160 * 121.18990 * 2 1 3 13 13 C 1.34768 * 127.03484 * 324.84157 * 12 2 1 14 14 O 1.21282 * 120.00451 * 359.71197 * 13 12 2 15 15 C 1.50699 * 120.00183 * 179.70963 * 13 12 2 16 16 C 1.52997 * 109.47563 * 180.02562 * 15 13 12 17 17 C 1.50699 * 109.47563 * 179.97438 * 16 15 13 18 18 H 1.08005 * 119.99852 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00598 * 179.97438 * 17 16 15 20 20 N 1.31523 * 119.99687 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00352 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47042 * 359.97438 * 21 19 17 23 23 H 1.48507 * 109.47039 * 240.00150 * 21 19 17 24 24 H 1.48499 * 109.47132 * 120.00595 * 21 19 17 25 25 H 1.09000 * 109.47151 * 305.72267 * 1 2 3 26 26 H 1.08994 * 109.47555 * 65.72716 * 1 2 3 27 27 H 1.09009 * 109.47289 * 185.72472 * 1 2 3 28 28 H 1.09000 * 109.47172 * 179.74390 * 3 2 1 29 29 H 1.09009 * 109.46888 * 299.73572 * 3 2 1 30 30 H 1.08991 * 109.47466 * 59.73565 * 3 2 1 31 31 H 1.09003 * 110.73372 * 219.61678 * 10 4 2 32 32 H 1.08996 * 110.89840 * 96.36567 * 10 4 2 33 33 H 1.09005 * 110.66518 * 278.94020 * 11 10 4 34 34 H 1.09001 * 110.66209 * 155.82142 * 11 10 4 35 35 H 1.09004 * 109.47154 * 59.99881 * 15 13 12 36 36 H 1.09003 * 109.47072 * 300.00191 * 15 13 12 37 37 H 1.09004 * 109.46993 * 59.99770 * 16 15 13 38 38 H 1.08996 * 109.47421 * 300.00234 * 16 15 13 39 39 H 0.97000 * 119.99635 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0542 -0.7453 -1.2387 5 1 2.6729 -0.0861 -1.8475 6 6 0.8845 -1.2885 -2.0619 7 9 0.1001 -2.1260 -1.2615 8 9 0.1056 -0.2227 -2.5250 9 9 1.3781 -2.0134 -3.1518 10 6 2.9019 -1.9099 -0.6767 11 6 3.2621 -1.4175 0.7475 12 7 2.0323 -0.7181 1.1863 13 6 1.4818 -0.7386 2.4162 14 8 0.4651 -0.1149 2.6360 15 6 2.1294 -1.5364 3.5185 16 6 1.3100 -1.3913 4.8023 17 6 1.9572 -2.1896 5.9045 18 1 2.8629 -2.7447 5.7089 19 6 1.3940 -2.2106 7.1628 20 7 0.2915 -1.5343 7.4011 21 14 2.1968 -3.1996 8.5290 22 1 3.4170 -3.8656 8.0068 23 1 1.2447 -4.2276 9.0212 24 1 2.5664 -2.2926 9.6452 25 1 -0.3633 0.6000 0.8343 26 1 -0.3634 0.4224 -0.9367 27 1 -0.3634 -1.0226 0.1025 28 1 3.1446 1.4261 0.0046 29 1 1.7004 1.9533 -0.8924 30 1 1.6928 1.9561 0.8875 31 1 3.8021 -2.0553 -1.2740 32 1 2.3180 -2.8291 -0.6311 33 1 4.1056 -0.7279 0.7143 34 1 3.4793 -2.2611 1.4027 35 1 3.1406 -1.1667 3.6887 36 1 2.1703 -2.5870 3.2308 37 1 0.2989 -1.7612 4.6318 38 1 1.2686 -0.3408 5.0903 39 1 -0.1251 -1.0204 6.6917 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360453073.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:27 Heat of formation + Delta-G solvation = -209.022605 kcal Electronic energy + Delta-G solvation = -25207.434108 eV Core-core repulsion = 21120.212934 eV Total energy + Delta-G solvation = -4087.221174 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.134 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -51.36211 -48.74787 -48.73340 -41.55827 -39.04531 -35.97369 -34.23274 -33.08754 -32.49630 -29.01176 -28.19556 -27.17616 -24.91490 -24.54631 -23.20434 -21.60499 -19.88206 -19.65129 -19.24806 -18.93138 -18.21904 -17.57754 -17.18038 -16.70263 -16.09180 -15.74918 -15.61986 -15.50705 -15.29018 -15.21453 -14.85010 -14.82823 -14.39670 -14.30530 -14.21034 -13.91216 -13.79812 -13.63477 -13.47513 -12.86661 -12.70322 -12.57578 -12.42733 -12.23568 -12.06834 -12.03896 -11.90147 -11.84531 -11.80360 -10.83736 -10.57243 -10.55220 -9.79488 -8.70302 -6.42214 1.53824 1.58586 1.62456 1.65153 1.80275 1.93324 2.58999 2.71413 2.72570 2.93899 3.16672 3.42786 3.47045 3.79005 3.90915 3.99675 4.12144 4.18679 4.28150 4.34362 4.41571 4.49794 4.59239 4.66757 4.77182 4.85121 4.87363 4.92251 5.03089 5.17703 5.22651 5.28491 5.35242 5.49697 5.92292 6.16244 6.46920 6.50578 7.19067 7.44173 8.69539 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.029914 B = 0.003726 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.792131 B = 7513.374959 C = 7675.634149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.163 3.837 3 C -0.147 4.147 4 C -0.133 4.133 5 H 0.169 0.831 6 C 0.459 3.541 7 F -0.190 7.190 8 F -0.180 7.180 9 F -0.177 7.177 10 C -0.121 4.121 11 C 0.092 3.908 12 N -0.618 5.618 13 C 0.529 3.471 14 O -0.580 6.580 15 C -0.105 4.105 16 C 0.028 3.972 17 C -0.616 4.616 18 H 0.068 0.932 19 C -0.046 4.046 20 N -0.941 5.941 21 Si 1.130 2.870 22 H -0.258 1.258 23 H -0.282 1.282 24 H -0.280 1.280 25 H 0.050 0.950 26 H 0.099 0.901 27 H 0.062 0.938 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.034 0.966 31 H 0.140 0.860 32 H 0.074 0.926 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.099 0.901 37 H -0.024 1.024 38 H -0.021 1.021 39 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.808 0.383 -24.615 26.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C 0.078 3.922 3 C -0.205 4.205 4 C -0.153 4.153 5 H 0.187 0.813 6 C 0.405 3.595 7 F -0.171 7.171 8 F -0.162 7.162 9 F -0.159 7.159 10 C -0.159 4.159 11 C -0.030 4.030 12 N -0.353 5.353 13 C 0.320 3.680 14 O -0.459 6.459 15 C -0.144 4.144 16 C -0.009 4.009 17 C -0.654 4.654 18 H 0.086 0.914 19 C -0.242 4.242 20 N -0.578 5.578 21 Si 0.950 3.050 22 H -0.182 1.182 23 H -0.208 1.208 24 H -0.206 1.206 25 H 0.070 0.930 26 H 0.117 0.883 27 H 0.080 0.920 28 H 0.106 0.894 29 H 0.109 0.891 30 H 0.054 0.946 31 H 0.158 0.842 32 H 0.093 0.907 33 H 0.126 0.874 34 H 0.115 0.885 35 H 0.121 0.879 36 H 0.117 0.883 37 H -0.006 1.006 38 H -0.003 1.003 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 10.067 0.283 -22.859 24.979 hybrid contribution -1.072 0.661 -1.425 1.901 sum 8.995 0.943 -24.284 25.913 Atomic orbital electron populations 1.23226 0.95218 1.03870 1.04480 1.20930 0.94187 0.93319 0.83753 1.22132 1.02670 0.93002 1.02659 1.23600 0.94266 1.01378 0.96076 0.81335 1.20592 0.84645 0.75632 0.78630 1.93108 1.77223 1.73533 1.73246 1.93043 1.77442 1.56271 1.89418 1.93193 1.87300 1.78755 1.56612 1.22885 1.01596 0.95533 0.95919 1.22933 0.86757 0.98049 0.95220 1.49007 1.27818 1.50377 1.08077 1.20914 0.83562 0.80727 0.82768 1.90630 1.26689 1.46263 1.82354 1.21461 1.00625 1.00307 0.92030 1.18855 0.94154 0.94660 0.93273 1.22524 1.12957 1.32644 0.97252 0.91405 1.27677 0.95493 0.97824 1.03202 1.70847 1.20070 1.30600 1.36322 0.82814 0.75327 0.74654 0.72250 1.18197 1.20753 1.20602 0.93043 0.88294 0.91950 0.89433 0.89138 0.94625 0.84240 0.90689 0.87366 0.88527 0.87897 0.88326 1.00588 1.00296 0.93985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -6.25 6.40 71.98 0.46 -5.79 16 2 C 0.16 3.71 0.92 3.68 0.00 3.71 16 3 C -0.15 -2.83 8.60 71.98 0.62 -2.21 16 4 C -0.13 -1.89 2.65 -9.98 -0.03 -1.92 16 5 H 0.17 1.09 7.68 -2.39 -0.02 1.07 16 6 C 0.46 8.48 2.32 71.98 0.17 8.65 16 7 F -0.19 -4.71 13.39 44.97 0.60 -4.11 16 8 F -0.18 -3.55 14.31 44.97 0.64 -2.90 16 9 F -0.18 -2.97 17.12 44.97 0.77 -2.20 16 10 C -0.12 -1.40 6.34 31.81 0.20 -1.20 16 11 C 0.09 1.45 6.94 86.73 0.60 2.06 16 12 N -0.62 -16.82 2.83 -763.43 -2.16 -18.99 16 13 C 0.53 20.89 7.67 87.66 0.67 21.56 16 14 O -0.58 -28.57 13.86 -3.04 -0.04 -28.61 16 15 C -0.10 -4.28 4.57 29.85 0.14 -4.15 16 16 C 0.03 1.58 3.57 29.85 0.11 1.69 16 17 C -0.62 -35.65 9.11 25.60 0.23 -35.42 16 18 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 19 C -0.05 -2.71 5.46 84.65 0.46 -2.25 16 20 N -0.94 -61.88 13.65 21.45 0.29 -61.59 16 21 Si 1.13 50.63 29.90 68.60 2.05 52.69 16 22 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 23 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 24 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 25 H 0.05 1.92 6.34 -2.39 -0.02 1.90 16 26 H 0.10 2.48 5.15 -2.39 -0.01 2.47 16 27 H 0.06 2.08 5.57 -2.38 -0.01 2.06 16 28 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 30 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.14 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.07 1.11 7.35 -2.39 -0.02 1.09 16 33 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 34 H 0.10 1.52 7.23 -2.39 -0.02 1.50 16 35 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 36 H 0.10 3.64 7.91 -2.39 -0.02 3.62 16 37 H -0.02 -1.53 7.97 -2.39 -0.02 -1.55 16 38 H -0.02 -1.33 7.96 -2.39 -0.02 -1.35 16 39 H 0.25 17.23 7.22 -92.71 -0.67 16.57 16 Total: -1.00 -80.80 317.91 6.95 -73.84 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: 1.16 Total: 7.14 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: 3.64 Total: -15.26 kcal Atomic # 7 Polarization: -78.71 SS G_CDS: -1.87 Total: -80.58 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -0.04 Total: -28.61 kcal Atomic # 9 Polarization: -11.23 SS G_CDS: 2.02 Total: -9.22 kcal Atomic # 14 Polarization: 50.63 SS G_CDS: 2.05 Total: 52.69 kcal Total: -80.80 6.95 -73.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360453073.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.178 kcal (2) G-P(sol) polarization free energy of solvation -80.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds