Wall clock time and date at job start Tue Mar 31 2020 06:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00186 * 2 1 4 4 H 1.48496 * 109.47076 * 270.00571 * 3 2 1 5 5 H 1.48502 * 109.47123 * 30.00029 * 3 2 1 6 6 H 1.48500 * 109.47415 * 150.00002 * 3 2 1 7 7 C 1.37878 * 119.99927 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99797 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00067 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47003 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46771 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00270 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99693 * 179.97438 * 11 10 9 14 14 C 1.46934 * 120.63023 * 179.97438 * 13 11 10 15 15 C 1.53193 * 108.88932 * 126.47052 * 14 13 11 16 16 C 1.53044 * 109.31547 * 54.56586 * 15 14 13 17 17 C 1.52999 * 109.46014 * 178.61108 * 16 15 14 18 18 C 1.52999 * 109.47363 * 293.36596 * 17 16 15 19 19 F 1.39910 * 109.47096 * 66.09542 * 18 17 16 20 20 F 1.39891 * 109.47217 * 186.09685 * 18 17 16 21 21 F 1.39903 * 109.47094 * 306.10383 * 18 17 16 22 22 C 1.53042 * 109.53786 * 298.63465 * 16 15 14 23 23 C 1.46965 * 120.65678 * 359.82753 * 13 11 10 24 24 H 0.97002 * 120.00050 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46670 * 60.00496 * 9 7 2 26 26 H 1.08994 * 109.47498 * 300.00518 * 9 7 2 27 27 H 1.09003 * 109.47030 * 60.00683 * 10 9 7 28 28 H 1.08997 * 109.47664 * 300.00101 * 10 9 7 29 29 H 1.08997 * 109.58406 * 6.61187 * 14 13 11 30 30 H 1.08997 * 109.58838 * 246.32870 * 14 13 11 31 31 H 1.08999 * 109.49658 * 174.51699 * 15 14 13 32 32 H 1.09001 * 109.49582 * 294.58183 * 15 14 13 33 33 H 1.09002 * 109.45800 * 58.63619 * 16 15 14 34 34 H 1.08994 * 109.46847 * 53.36896 * 17 16 15 35 35 H 1.08997 * 109.46797 * 173.36411 * 17 16 15 36 36 H 1.08999 * 109.49739 * 181.31153 * 22 16 15 37 37 H 1.08996 * 109.49269 * 301.41255 * 22 16 15 38 38 H 1.08999 * 109.46683 * 113.74525 * 23 13 11 39 39 H 1.08995 * 109.70955 * 353.45793 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0214 -2.6366 0.0001 11 6 5.5285 -2.6366 0.0001 12 8 6.1349 -1.5863 0.0005 13 7 6.2023 -3.8038 0.0008 14 6 7.6715 -3.8200 0.0003 15 6 8.1584 -4.6861 1.1663 16 6 7.5146 -6.0713 1.0712 17 6 8.0253 -6.9503 2.2147 18 6 9.5184 -7.2226 2.0210 19 9 10.2318 -6.0267 2.1554 20 9 9.9546 -8.1369 2.9858 21 9 9.7339 -7.7531 0.7445 22 6 5.9935 -5.9368 1.1717 23 6 5.4821 -5.0849 0.0052 24 1 -0.4850 0.8401 0.0004 25 1 3.8751 -0.6797 0.8895 26 1 3.8745 -0.6808 -0.8904 27 1 3.6578 -3.1506 -0.8897 28 1 3.6584 -3.1503 0.8902 29 1 8.0482 -2.8040 0.1176 30 1 8.0321 -4.2370 -0.9401 31 1 9.2428 -4.7849 1.1182 32 1 7.8772 -4.2177 2.1095 33 1 7.7762 -6.5286 0.1170 34 1 7.8695 -6.4381 3.1641 35 1 7.4811 -7.8947 2.2179 36 1 5.5371 -6.9256 1.1273 37 1 5.7323 -5.4569 2.1149 38 1 5.6623 -5.6062 -0.9349 39 1 4.4136 -4.9055 0.1245 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360547978.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:57 Heat of formation + Delta-G solvation = -211.592077 kcal Electronic energy + Delta-G solvation = -24009.165134 eV Core-core repulsion = 19921.832539 eV Total energy + Delta-G solvation = -4087.332595 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.134 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.48389 -47.98507 -47.92681 -40.04903 -37.79217 -34.38632 -33.56682 -31.75987 -30.87863 -30.05031 -26.43762 -25.10367 -23.45162 -22.81667 -21.38732 -20.37814 -19.01400 -18.82038 -18.47328 -17.65061 -17.24887 -16.22755 -15.53320 -15.51160 -15.02481 -14.85496 -14.78115 -14.42437 -14.24706 -14.13671 -14.07823 -13.87681 -13.70639 -13.66942 -13.23825 -12.77556 -12.52878 -12.45628 -12.16458 -12.14027 -11.46644 -11.39031 -11.35636 -10.96970 -10.78233 -10.73336 -10.12002 -10.04217 -9.78699 -9.23588 -9.14283 -8.54869 -8.49762 -6.03903 -4.02626 2.42128 3.06771 3.17816 3.37645 3.44270 3.44603 3.55310 3.62080 3.68152 4.31966 4.35357 4.50491 4.51125 4.81003 4.89033 4.99051 5.07636 5.13026 5.18956 5.31754 5.35938 5.48707 5.58035 5.62024 5.66448 5.81694 5.90798 6.03423 6.04558 6.08793 6.60797 6.71507 7.35886 7.42692 7.61811 7.78701 8.48235 8.61306 8.98866 9.59352 11.08899 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.038428 B = 0.002976 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.464637 B = 9405.633201 C = 9711.489586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.525 4.525 8 H 0.072 0.928 9 C 0.001 3.999 10 C -0.121 4.121 11 C 0.513 3.487 12 O -0.540 6.540 13 N -0.624 5.624 14 C 0.112 3.888 15 C -0.148 4.148 16 C -0.091 4.091 17 C -0.162 4.162 18 C 0.451 3.549 19 F -0.179 7.179 20 F -0.187 7.187 21 F -0.183 7.183 22 C -0.127 4.127 23 C 0.108 3.892 24 H 0.263 0.737 25 H 0.023 0.977 26 H 0.019 0.981 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.370 -18.895 3.799 26.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.185 1.185 7 C -0.563 4.563 8 H 0.090 0.910 9 C -0.037 4.037 10 C -0.160 4.160 11 C 0.303 3.697 12 O -0.416 6.416 13 N -0.360 5.360 14 C -0.011 4.011 15 C -0.186 4.186 16 C -0.110 4.110 17 C -0.200 4.200 18 C 0.397 3.603 19 F -0.160 7.160 20 F -0.169 7.169 21 F -0.165 7.165 22 C -0.165 4.165 23 C -0.015 4.015 24 H 0.073 0.927 25 H 0.041 0.959 26 H 0.037 0.963 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.111 0.889 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 18.567 -18.190 3.792 26.268 hybrid contribution 0.624 0.639 0.005 0.893 sum 19.191 -17.552 3.796 26.283 Atomic orbital electron populations 1.69911 1.06293 1.26982 1.51078 1.24970 0.94705 0.99239 0.94319 0.86797 0.80620 0.83387 0.78766 1.20234 1.21443 1.18535 1.21104 0.89260 0.94536 1.51351 0.90955 1.19376 0.96405 0.90239 0.97646 1.21687 0.88109 1.03195 1.03056 1.21559 0.91592 0.82366 0.74162 1.90641 1.70705 1.31073 1.49177 1.48288 1.06153 1.06243 1.75305 1.21458 0.80594 1.01692 0.97335 1.22381 1.01640 0.94478 1.00111 1.21204 0.96705 0.95482 0.97574 1.22999 0.88581 1.04704 1.03745 1.20690 0.92030 0.73890 0.73673 1.93126 1.81448 1.46086 1.95389 1.93188 1.91700 1.67987 1.64020 1.93182 1.96028 1.86733 1.40558 1.21948 0.93653 1.00781 1.00143 1.21704 0.97906 0.84003 0.97895 0.92713 0.95860 0.96303 0.89672 0.89666 0.88914 0.91997 0.89364 0.90964 0.89507 0.87101 0.87079 0.90228 0.90741 0.91466 0.88515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.90 13.96 55.43 0.77 -27.12 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 22.58 27.47 -169.99 -4.67 17.91 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.26 -6.70 6.54 56.52 0.37 -6.33 16 7 C -0.52 -14.90 9.66 -34.44 -0.33 -15.24 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 9 C 0.00 0.03 3.33 -27.89 -0.09 -0.06 16 10 C -0.12 -2.31 3.99 -27.88 -0.11 -2.42 16 11 C 0.51 9.36 7.70 -10.98 -0.08 9.28 16 12 O -0.54 -12.01 15.39 5.56 0.09 -11.92 16 13 N -0.62 -8.41 2.98 -172.71 -0.51 -8.92 16 14 C 0.11 1.32 6.43 -3.71 -0.02 1.29 16 15 C -0.15 -1.35 4.92 -26.61 -0.13 -1.48 16 16 C -0.09 -0.64 2.05 -90.58 -0.19 -0.83 16 17 C -0.16 -0.91 4.82 -26.73 -0.13 -1.03 16 18 C 0.45 3.39 3.13 37.16 0.12 3.50 16 19 F -0.18 -1.57 14.25 2.25 0.03 -1.53 16 20 F -0.19 -1.56 17.32 2.25 0.04 -1.52 16 21 F -0.18 -1.55 16.44 2.25 0.04 -1.51 16 22 C -0.13 -0.92 5.36 -26.59 -0.14 -1.07 16 23 C 0.11 1.06 6.34 -3.67 -0.02 1.03 16 24 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 25 H 0.02 0.60 7.15 -51.93 -0.37 0.23 16 26 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 27 H 0.08 1.51 7.95 -51.93 -0.41 1.09 16 28 H 0.09 1.49 7.69 -51.93 -0.40 1.09 16 29 H 0.09 1.29 7.00 -51.93 -0.36 0.93 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.09 0.77 5.43 -51.93 -0.28 0.48 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 0.60 7.45 -51.93 -0.39 0.22 16 34 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.11 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.10 0.97 5.95 -51.93 -0.31 0.66 16 LS Contribution 321.20 15.07 4.84 4.84 Total: -1.00 -33.84 321.20 -6.08 -39.91 By element: Atomic # 1 Polarization: 0.41 SS G_CDS: -5.46 Total: -5.05 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -1.24 Total: -5.08 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.26 Total: -36.04 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.09 Total: -11.92 kcal Atomic # 9 Polarization: -4.67 SS G_CDS: 0.11 Total: -4.56 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.67 Total: 17.91 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.84 -6.08 -39.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360547978.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -171.680 kcal (2) G-P(sol) polarization free energy of solvation -33.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds