Wall clock time and date at job start Tue Mar 31 2020 06:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00186 * 2 1 4 4 H 1.48496 * 109.47076 * 270.00571 * 3 2 1 5 5 H 1.48502 * 109.47123 * 30.00029 * 3 2 1 6 6 H 1.48500 * 109.47415 * 150.00002 * 3 2 1 7 7 C 1.37878 * 119.99927 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99797 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00067 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47003 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46771 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00270 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99693 * 179.97438 * 11 10 9 14 14 C 1.46934 * 120.63023 * 179.97438 * 13 11 10 15 15 C 1.53193 * 108.88932 * 126.47052 * 14 13 11 16 16 C 1.53044 * 109.31547 * 54.56586 * 15 14 13 17 17 C 1.52999 * 109.46014 * 178.61108 * 16 15 14 18 18 C 1.52999 * 109.47363 * 293.36596 * 17 16 15 19 19 F 1.39910 * 109.47096 * 66.09542 * 18 17 16 20 20 F 1.39891 * 109.47217 * 186.09685 * 18 17 16 21 21 F 1.39903 * 109.47094 * 306.10383 * 18 17 16 22 22 C 1.53042 * 109.53786 * 298.63465 * 16 15 14 23 23 C 1.46965 * 120.65678 * 359.82753 * 13 11 10 24 24 H 0.97002 * 120.00050 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46670 * 60.00496 * 9 7 2 26 26 H 1.08994 * 109.47498 * 300.00518 * 9 7 2 27 27 H 1.09003 * 109.47030 * 60.00683 * 10 9 7 28 28 H 1.08997 * 109.47664 * 300.00101 * 10 9 7 29 29 H 1.08997 * 109.58406 * 6.61187 * 14 13 11 30 30 H 1.08997 * 109.58838 * 246.32870 * 14 13 11 31 31 H 1.08999 * 109.49658 * 174.51699 * 15 14 13 32 32 H 1.09001 * 109.49582 * 294.58183 * 15 14 13 33 33 H 1.09002 * 109.45800 * 58.63619 * 16 15 14 34 34 H 1.08994 * 109.46847 * 53.36896 * 17 16 15 35 35 H 1.08997 * 109.46797 * 173.36411 * 17 16 15 36 36 H 1.08999 * 109.49739 * 181.31153 * 22 16 15 37 37 H 1.08996 * 109.49269 * 301.41255 * 22 16 15 38 38 H 1.08999 * 109.46683 * 113.74525 * 23 13 11 39 39 H 1.08995 * 109.70955 * 353.45793 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0214 -2.6366 0.0001 11 6 5.5285 -2.6366 0.0001 12 8 6.1349 -1.5863 0.0005 13 7 6.2023 -3.8038 0.0008 14 6 7.6715 -3.8200 0.0003 15 6 8.1584 -4.6861 1.1663 16 6 7.5146 -6.0713 1.0712 17 6 8.0253 -6.9503 2.2147 18 6 9.5184 -7.2226 2.0210 19 9 10.2318 -6.0267 2.1554 20 9 9.9546 -8.1369 2.9858 21 9 9.7339 -7.7531 0.7445 22 6 5.9935 -5.9368 1.1717 23 6 5.4821 -5.0849 0.0052 24 1 -0.4850 0.8401 0.0004 25 1 3.8751 -0.6797 0.8895 26 1 3.8745 -0.6808 -0.8904 27 1 3.6578 -3.1506 -0.8897 28 1 3.6584 -3.1503 0.8902 29 1 8.0482 -2.8040 0.1176 30 1 8.0321 -4.2370 -0.9401 31 1 9.2428 -4.7849 1.1182 32 1 7.8772 -4.2177 2.1095 33 1 7.7762 -6.5286 0.1170 34 1 7.8695 -6.4381 3.1641 35 1 7.4811 -7.8947 2.2179 36 1 5.5371 -6.9256 1.1273 37 1 5.7323 -5.4569 2.1149 38 1 5.6623 -5.6062 -0.9349 39 1 4.4136 -4.9055 0.1245 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360547978.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:57 Heat of formation + Delta-G solvation = -232.447325 kcal Electronic energy + Delta-G solvation = -24010.069485 eV Core-core repulsion = 19921.832539 eV Total energy + Delta-G solvation = -4088.236946 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.134 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -51.07990 -48.59816 -48.52736 -41.20346 -38.83885 -35.58873 -35.31654 -33.44618 -31.99738 -30.85911 -28.14048 -26.02666 -24.42528 -23.61908 -22.79689 -21.41975 -19.99245 -19.47085 -19.36349 -19.00135 -18.23829 -17.76990 -16.72499 -16.71166 -16.24414 -15.72622 -15.57245 -15.40616 -15.10437 -14.93183 -14.88474 -14.79224 -14.68138 -14.65135 -14.37386 -14.34392 -13.91849 -13.51616 -13.19069 -12.96686 -12.87278 -12.79665 -12.27769 -12.04740 -11.98834 -11.94128 -11.77587 -11.50453 -11.42988 -11.35802 -10.78064 -10.64893 -9.62439 -8.31610 -6.34055 1.32585 1.34763 1.49791 1.66689 1.88749 2.06822 2.34835 2.91805 3.04187 3.06310 3.15721 3.63106 3.72735 3.85018 3.92061 4.14938 4.30268 4.33875 4.38618 4.45824 4.52602 4.56427 4.63720 4.77578 4.86867 4.89433 4.96999 4.97564 5.12679 5.15385 5.33353 5.40950 5.43785 5.60713 5.66111 6.23457 6.41859 6.72137 7.24302 7.31442 8.83932 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.038428 B = 0.002976 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.464637 B = 9405.633201 C = 9711.489586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.015 3.985 3 Si 0.936 3.064 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.527 4.527 8 H 0.053 0.947 9 C 0.005 3.995 10 C -0.112 4.112 11 C 0.511 3.489 12 O -0.591 6.591 13 N -0.612 5.612 14 C 0.108 3.892 15 C -0.141 4.141 16 C -0.087 4.087 17 C -0.154 4.154 18 C 0.448 3.552 19 F -0.190 7.190 20 F -0.193 7.193 21 F -0.189 7.189 22 C -0.121 4.121 23 C 0.096 3.904 24 H 0.267 0.733 25 H 0.007 0.993 26 H 0.006 0.994 27 H 0.101 0.899 28 H 0.102 0.898 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.061 0.939 33 H 0.095 0.905 34 H 0.119 0.881 35 H 0.137 0.863 36 H 0.112 0.888 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.255 -20.796 3.971 28.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.183 4.183 3 Si 0.761 3.239 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.565 4.565 8 H 0.071 0.929 9 C -0.033 4.033 10 C -0.152 4.152 11 C 0.301 3.699 12 O -0.472 6.472 13 N -0.345 5.345 14 C -0.014 4.014 15 C -0.179 4.179 16 C -0.105 4.105 17 C -0.191 4.191 18 C 0.394 3.606 19 F -0.171 7.171 20 F -0.175 7.175 21 F -0.171 7.171 22 C -0.158 4.158 23 C -0.025 4.025 24 H 0.076 0.924 25 H 0.026 0.974 26 H 0.024 0.976 27 H 0.120 0.880 28 H 0.121 0.879 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.080 0.920 33 H 0.113 0.887 34 H 0.137 0.863 35 H 0.155 0.845 36 H 0.130 0.870 37 H 0.086 0.914 38 H 0.107 0.893 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 19.463 -20.158 3.965 28.300 hybrid contribution 0.368 1.113 -0.068 1.174 sum 19.831 -19.045 3.897 27.770 Atomic orbital electron populations 1.70015 1.07686 1.28067 1.52542 1.25769 0.95468 1.02715 0.94336 0.85866 0.79212 0.79754 0.79104 1.19446 1.20284 1.18804 1.21414 0.91091 0.93772 1.50190 0.92872 1.19224 0.94052 0.93861 0.96148 1.21495 0.89266 0.99704 1.04738 1.21285 0.91139 0.83105 0.74343 1.90621 1.71323 1.33153 1.52074 1.48285 1.07067 1.06230 1.72953 1.21601 0.79345 1.00994 0.99495 1.22322 1.02056 0.95342 0.98210 1.21161 0.96438 0.94186 0.98743 1.23004 0.87049 1.05739 1.03349 1.21023 0.92908 0.73374 0.73273 1.93107 1.81892 1.46704 1.95410 1.93177 1.91879 1.68175 1.64226 1.93171 1.96146 1.86797 1.40966 1.21929 0.93687 1.01748 0.98479 1.22081 0.97615 0.82535 1.00320 0.92371 0.97424 0.97601 0.88035 0.87943 0.91707 0.90223 0.88869 0.91973 0.88679 0.86272 0.84458 0.86998 0.91364 0.89276 0.88681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.73 13.96 21.45 0.30 -58.43 16 2 C 0.01 0.88 5.47 84.65 0.46 1.35 16 3 Si 0.94 46.95 27.47 68.60 1.88 48.83 16 4 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 5 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 6 H -0.26 -13.24 6.54 99.48 0.65 -12.59 16 7 C -0.53 -30.21 9.66 25.60 0.25 -29.96 16 8 H 0.05 3.18 7.99 -2.91 -0.02 3.15 16 9 C 0.01 0.26 3.33 29.85 0.10 0.36 16 10 C -0.11 -4.23 3.99 29.85 0.12 -4.11 16 11 C 0.51 18.46 7.70 87.66 0.67 19.14 16 12 O -0.59 -26.77 15.39 -3.03 -0.05 -26.82 16 13 N -0.61 -15.55 2.98 -818.71 -2.44 -17.99 16 14 C 0.11 2.42 6.43 86.36 0.56 2.97 16 15 C -0.14 -2.32 4.92 30.67 0.15 -2.17 16 16 C -0.09 -0.93 2.05 -10.77 -0.02 -0.95 16 17 C -0.15 -1.17 4.82 30.59 0.15 -1.03 16 18 C 0.45 5.65 3.13 71.98 0.23 5.87 16 19 F -0.19 -3.01 14.25 44.97 0.64 -2.37 16 20 F -0.19 -2.81 17.32 44.97 0.78 -2.03 16 21 F -0.19 -2.73 16.44 44.97 0.74 -1.99 16 22 C -0.12 -1.29 5.36 30.69 0.16 -1.13 16 23 C 0.10 1.58 6.34 86.37 0.55 2.13 16 24 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 25 H 0.01 0.39 7.15 -2.39 -0.02 0.37 16 26 H 0.01 0.29 7.53 -2.39 -0.02 0.28 16 27 H 0.10 3.45 7.95 -2.39 -0.02 3.43 16 28 H 0.10 3.46 7.69 -2.39 -0.02 3.44 16 29 H 0.06 1.84 7.00 -2.39 -0.02 1.82 16 30 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.09 1.47 5.43 -2.39 -0.01 1.46 16 32 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.09 0.93 7.45 -2.39 -0.02 0.92 16 34 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.14 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.09 1.63 5.95 -2.39 -0.01 1.62 16 Total: -1.00 -74.55 321.20 6.23 -68.32 By element: Atomic # 1 Polarization: -1.00 SS G_CDS: 1.00 Total: 0.00 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: 3.37 Total: -7.52 kcal Atomic # 7 Polarization: -74.29 SS G_CDS: -2.14 Total: -76.43 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.05 Total: -26.82 kcal Atomic # 9 Polarization: -8.54 SS G_CDS: 2.16 Total: -6.39 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 1.88 Total: 48.83 kcal Total: -74.55 6.23 -68.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360547978.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.129 kcal (2) G-P(sol) polarization free energy of solvation -74.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds