Wall clock time and date at job start Tue Mar 31 2020 07:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46649 * 2 1 4 4 C 1.53001 * 109.47017 * 179.97438 * 3 2 1 5 5 H 1.09002 * 115.56042 * 29.30693 * 4 3 2 6 6 C 1.53001 * 117.49996 * 243.62394 * 4 3 2 7 7 C 1.52997 * 117.50089 * 174.99753 * 4 3 2 8 8 H 1.08998 * 117.52071 * 0.02562 * 7 4 3 9 9 C 1.50698 * 117.49827 * 214.97849 * 7 4 3 10 10 O 1.21276 * 120.00423 * 359.97438 * 9 7 4 11 11 N 1.34782 * 120.00035 * 179.97438 * 9 7 4 12 12 C 1.46495 * 120.00029 * 179.97438 * 11 9 7 13 13 C 1.50702 * 109.47574 * 269.99868 * 12 11 9 14 14 H 1.08002 * 119.99441 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00075 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00481 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99886 * 179.73007 * 15 13 12 18 18 H 1.48494 * 109.47225 * 180.27306 * 17 15 13 19 19 H 1.48506 * 109.46866 * 300.27330 * 17 15 13 20 20 H 1.48498 * 109.47306 * 60.26614 * 17 15 13 21 21 C 1.46504 * 119.99774 * 0.02562 * 11 9 7 22 22 C 1.52998 * 109.47053 * 269.99768 * 21 11 9 23 23 F 1.39902 * 109.47110 * 60.00169 * 22 21 11 24 24 F 1.39899 * 109.47125 * 179.97438 * 22 21 11 25 25 F 1.39902 * 109.47290 * 300.00329 * 22 21 11 26 26 H 1.09007 * 109.46898 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47595 * 300.00070 * 1 2 3 28 28 H 1.08994 * 109.47125 * 60.00774 * 1 2 3 29 29 H 1.08992 * 109.47151 * 239.99671 * 2 1 3 30 30 H 1.09005 * 109.46786 * 119.99555 * 2 1 3 31 31 H 1.08992 * 109.47613 * 59.99953 * 3 2 1 32 32 H 1.09005 * 109.47163 * 299.99324 * 3 2 1 33 33 H 1.08995 * 117.50341 * 145.01880 * 6 4 3 34 34 H 1.08998 * 117.49841 * 359.97438 * 6 4 3 35 35 H 1.09009 * 109.47230 * 150.00208 * 12 11 9 36 36 H 1.08998 * 109.47557 * 30.00700 * 12 11 9 37 37 H 0.97005 * 119.99656 * 359.72741 * 16 15 13 38 38 H 1.08994 * 109.47131 * 30.00106 * 21 11 9 39 39 H 1.09000 * 109.46811 * 149.99902 * 21 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 4.0405 0.5851 -0.4804 6 6 4.2758 2.0458 1.2167 7 6 4.2763 2.7946 -0.1176 8 1 3.6515 3.6843 -0.1954 9 6 5.5695 2.8387 -0.8902 10 8 6.0125 1.8262 -1.3894 11 7 6.2337 4.0036 -1.0263 12 6 7.4911 4.0464 -1.7768 13 6 8.6439 3.7891 -0.8409 14 1 8.4584 3.6110 0.2080 15 6 9.9353 3.7810 -1.3238 16 7 10.1611 3.9973 -2.6012 17 14 11.3648 3.4695 -0.1623 18 1 12.6397 3.5188 -0.9221 19 1 11.3786 4.5112 0.8961 20 1 11.2123 2.1311 0.4626 21 6 5.6989 5.2267 -0.4227 22 6 4.7792 5.9292 -1.4235 23 9 3.7233 5.0771 -1.7643 24 9 4.2680 7.0968 -0.8469 25 9 5.5049 6.2557 -2.5741 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6766 1.9563 -0.8901 33 1 5.2107 1.5852 1.5357 34 1 3.6502 2.4429 2.0161 35 1 7.6075 5.0286 -2.2351 36 1 7.4765 3.2823 -2.5541 37 1 9.4188 4.1587 -3.2044 38 1 5.1335 4.9722 0.4737 39 1 6.5216 5.8905 -0.1572 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361859618.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:43 Heat of formation + Delta-G solvation = -187.010030 kcal Electronic energy + Delta-G solvation = -24656.738440 eV Core-core repulsion = 20570.471803 eV Total energy + Delta-G solvation = -4086.266637 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.134 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.93007 -47.48608 -47.36842 -39.73753 -37.20586 -35.37833 -33.92941 -33.00721 -29.28345 -27.88336 -26.76263 -24.05883 -23.36235 -22.30626 -21.84682 -20.52572 -18.96745 -18.37735 -18.21327 -17.72926 -16.97583 -16.13359 -15.60289 -15.28617 -14.76562 -14.38965 -14.26510 -14.14533 -13.88537 -13.84212 -13.72998 -13.54359 -13.48173 -13.27530 -12.73390 -12.62524 -12.38676 -12.15151 -12.02192 -11.81582 -11.46186 -11.37995 -11.11518 -11.00541 -10.91145 -10.65587 -10.14991 -10.14151 -9.90767 -9.34394 -9.19999 -8.45359 -7.96633 -6.45723 -4.19079 2.69453 3.09931 3.33631 3.39618 3.43269 3.61071 3.86747 4.11221 4.17384 4.31606 4.48415 4.62091 4.81389 4.84748 4.97980 5.07182 5.09106 5.20735 5.28547 5.32341 5.44391 5.48830 5.62717 5.69596 5.71981 5.75865 5.92087 6.02866 6.14402 6.16022 6.40148 6.64593 6.99956 7.11215 7.91429 7.94701 8.32260 8.66894 8.77990 9.51126 10.92065 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.013937 B = 0.005191 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.610186 B = 5392.858735 C = 6792.992546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.089 4.089 4 C -0.118 4.118 5 H 0.117 0.883 6 C -0.150 4.150 7 C -0.199 4.199 8 H 0.123 0.877 9 C 0.543 3.457 10 O -0.522 6.522 11 N -0.590 5.590 12 C 0.233 3.767 13 C -0.613 4.613 14 H 0.053 0.947 15 C 0.022 3.978 16 N -0.905 5.905 17 Si 1.072 2.928 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.287 1.287 21 C 0.077 3.923 22 C 0.427 3.573 23 F -0.185 7.185 24 F -0.187 7.187 25 F -0.176 7.176 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.030 0.970 36 H 0.038 0.962 37 H 0.269 0.731 38 H 0.115 0.885 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.845 0.530 7.476 18.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.126 4.126 4 C -0.137 4.137 5 H 0.135 0.865 6 C -0.187 4.187 7 C -0.220 4.220 8 H 0.140 0.860 9 C 0.330 3.670 10 O -0.397 6.397 11 N -0.320 5.320 12 C 0.114 3.886 13 C -0.651 4.651 14 H 0.072 0.928 15 C -0.183 4.183 16 N -0.540 5.540 17 Si 0.900 3.100 18 H -0.206 1.206 19 H -0.214 1.214 20 H -0.214 1.214 21 C -0.051 4.051 22 C 0.371 3.629 23 F -0.166 7.166 24 F -0.169 7.169 25 F -0.158 7.158 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.048 0.952 36 H 0.056 0.944 37 H 0.079 0.921 38 H 0.133 0.867 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -14.929 -0.152 7.212 16.581 hybrid contribution -1.839 0.541 -0.257 1.934 sum -16.768 0.389 6.956 18.158 Atomic orbital electron populations 1.21780 0.96029 1.01473 1.01698 1.21502 0.95455 0.96653 1.02377 1.21228 0.92134 0.97172 1.02077 1.22403 0.94382 0.95723 1.01151 0.86480 1.23092 1.03110 1.02357 0.90161 1.22572 0.98421 0.98847 1.02133 0.85963 1.19546 0.84063 0.83211 0.80140 1.90675 1.68225 1.32998 1.47845 1.47889 1.24874 1.05251 1.54027 1.19543 0.79059 0.97700 0.92318 1.22205 0.92497 1.54374 0.96043 0.92832 1.25823 1.00007 0.93802 0.98644 1.70802 1.35672 1.44116 1.03458 0.83497 0.75538 0.76501 0.74488 1.20598 1.21363 1.21383 1.22591 0.98609 0.90333 0.93591 1.21737 0.80659 0.77376 0.83125 1.93130 1.59849 1.70430 1.93215 1.93158 1.88346 1.50977 1.84382 1.93211 1.77144 1.92859 1.52551 0.92857 0.92869 0.92778 0.91765 0.91825 0.91775 0.91448 0.88143 0.88059 0.95222 0.94386 0.92106 0.86734 0.85382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 37.16 0.37 -0.85 16 2 C -0.12 -1.15 5.89 -26.73 -0.16 -1.31 16 3 C -0.09 -0.93 5.50 -26.73 -0.15 -1.08 16 4 C -0.12 -1.58 5.25 -90.62 -0.48 -2.06 16 5 H 0.12 1.81 7.60 -51.93 -0.39 1.42 16 6 C -0.15 -1.91 9.88 -26.73 -0.26 -2.17 16 7 C -0.20 -3.00 4.17 -91.77 -0.38 -3.38 16 8 H 0.12 1.63 5.31 -51.93 -0.28 1.35 16 9 C 0.54 11.19 7.12 -10.98 -0.08 11.11 16 10 O -0.52 -13.03 15.84 5.56 0.09 -12.94 16 11 N -0.59 -12.17 2.37 -175.06 -0.42 -12.59 16 12 C 0.23 5.92 4.27 -5.20 -0.02 5.90 16 13 C -0.61 -17.03 9.39 -34.44 -0.32 -17.36 16 14 H 0.05 1.48 7.81 -52.49 -0.41 1.07 16 15 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 16 N -0.91 -27.28 13.65 55.43 0.76 -26.52 16 17 Si 1.07 25.04 29.90 -169.99 -5.08 19.96 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 21 C 0.08 1.19 5.22 -4.04 -0.02 1.17 16 22 C 0.43 6.50 3.29 37.16 0.12 6.62 16 23 F -0.18 -2.83 14.56 2.25 0.03 -2.80 16 24 F -0.19 -2.54 17.32 2.25 0.04 -2.50 16 25 F -0.18 -3.13 16.23 2.25 0.04 -3.10 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.59 7.87 -51.93 -0.41 0.18 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.10 1.42 8.14 -51.93 -0.42 0.99 16 34 H 0.10 1.00 8.03 -51.93 -0.42 0.58 16 35 H 0.03 0.76 7.13 -51.92 -0.37 0.39 16 36 H 0.04 1.09 7.28 -51.93 -0.38 0.71 16 37 H 0.27 8.08 7.22 -40.82 -0.29 7.78 16 38 H 0.11 1.40 6.64 -51.93 -0.34 1.05 16 39 H 0.13 1.93 8.07 -51.93 -0.42 1.51 16 LS Contribution 336.50 15.07 5.07 5.07 Total: -1.00 -32.40 336.50 -6.42 -38.82 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -5.47 Total: -0.53 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -1.48 Total: -2.87 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.34 Total: -39.11 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.09 Total: -12.94 kcal Atomic # 9 Polarization: -8.51 SS G_CDS: 0.11 Total: -8.40 kcal Atomic # 14 Polarization: 25.04 SS G_CDS: -5.08 Total: 19.96 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.40 -6.42 -38.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361859618.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.188 kcal (2) G-P(sol) polarization free energy of solvation -32.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds