Wall clock time and date at job start Tue Mar 31 2020 07:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46649 * 2 1 4 4 C 1.53001 * 109.47017 * 179.97438 * 3 2 1 5 5 H 1.09002 * 115.56042 * 29.30693 * 4 3 2 6 6 C 1.53001 * 117.49996 * 243.62394 * 4 3 2 7 7 C 1.52997 * 117.50089 * 174.99753 * 4 3 2 8 8 H 1.08998 * 117.52071 * 0.02562 * 7 4 3 9 9 C 1.50698 * 117.49827 * 214.97849 * 7 4 3 10 10 O 1.21276 * 120.00423 * 359.97438 * 9 7 4 11 11 N 1.34782 * 120.00035 * 179.97438 * 9 7 4 12 12 C 1.46495 * 120.00029 * 179.97438 * 11 9 7 13 13 C 1.50702 * 109.47574 * 269.99868 * 12 11 9 14 14 H 1.08002 * 119.99441 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00075 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00481 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99886 * 179.73007 * 15 13 12 18 18 H 1.48494 * 109.47225 * 180.27306 * 17 15 13 19 19 H 1.48506 * 109.46866 * 300.27330 * 17 15 13 20 20 H 1.48498 * 109.47306 * 60.26614 * 17 15 13 21 21 C 1.46504 * 119.99774 * 0.02562 * 11 9 7 22 22 C 1.52998 * 109.47053 * 269.99768 * 21 11 9 23 23 F 1.39902 * 109.47110 * 60.00169 * 22 21 11 24 24 F 1.39899 * 109.47125 * 179.97438 * 22 21 11 25 25 F 1.39902 * 109.47290 * 300.00329 * 22 21 11 26 26 H 1.09007 * 109.46898 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47595 * 300.00070 * 1 2 3 28 28 H 1.08994 * 109.47125 * 60.00774 * 1 2 3 29 29 H 1.08992 * 109.47151 * 239.99671 * 2 1 3 30 30 H 1.09005 * 109.46786 * 119.99555 * 2 1 3 31 31 H 1.08992 * 109.47613 * 59.99953 * 3 2 1 32 32 H 1.09005 * 109.47163 * 299.99324 * 3 2 1 33 33 H 1.08995 * 117.50341 * 145.01880 * 6 4 3 34 34 H 1.08998 * 117.49841 * 359.97438 * 6 4 3 35 35 H 1.09009 * 109.47230 * 150.00208 * 12 11 9 36 36 H 1.08998 * 109.47557 * 30.00700 * 12 11 9 37 37 H 0.97005 * 119.99656 * 359.72741 * 16 15 13 38 38 H 1.08994 * 109.47131 * 30.00106 * 21 11 9 39 39 H 1.09000 * 109.46811 * 149.99902 * 21 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 4.0405 0.5851 -0.4804 6 6 4.2758 2.0458 1.2167 7 6 4.2763 2.7946 -0.1176 8 1 3.6515 3.6843 -0.1954 9 6 5.5695 2.8387 -0.8902 10 8 6.0125 1.8262 -1.3894 11 7 6.2337 4.0036 -1.0263 12 6 7.4911 4.0464 -1.7768 13 6 8.6439 3.7891 -0.8409 14 1 8.4584 3.6110 0.2080 15 6 9.9353 3.7810 -1.3238 16 7 10.1611 3.9973 -2.6012 17 14 11.3648 3.4695 -0.1623 18 1 12.6397 3.5188 -0.9221 19 1 11.3786 4.5112 0.8961 20 1 11.2123 2.1311 0.4626 21 6 5.6989 5.2267 -0.4227 22 6 4.7792 5.9292 -1.4235 23 9 3.7233 5.0771 -1.7643 24 9 4.2680 7.0968 -0.8469 25 9 5.5049 6.2557 -2.5741 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6766 1.9563 -0.8901 33 1 5.2107 1.5852 1.5357 34 1 3.6502 2.4429 2.0161 35 1 7.6075 5.0286 -2.2351 36 1 7.4765 3.2823 -2.5541 37 1 9.4188 4.1587 -3.2044 38 1 5.1335 4.9722 0.4737 39 1 6.5216 5.8905 -0.1572 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361859618.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:42 Heat of formation + Delta-G solvation = -205.553054 kcal Electronic energy + Delta-G solvation = -24657.542526 eV Core-core repulsion = 20570.471803 eV Total energy + Delta-G solvation = -4087.070723 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.134 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -51.18562 -48.70866 -48.66609 -41.25480 -38.42801 -37.07098 -35.19463 -34.67590 -30.87319 -29.19985 -28.09280 -25.82946 -24.75132 -23.80860 -22.75803 -21.52577 -20.40066 -19.65790 -19.50765 -19.38942 -18.67859 -17.58998 -17.23737 -16.29149 -15.99455 -15.75962 -15.67911 -15.55361 -15.37167 -15.14987 -15.10018 -14.82977 -14.80564 -14.42641 -14.16653 -13.83604 -13.71382 -13.49130 -13.38065 -13.10428 -13.03448 -12.86762 -12.49671 -12.22092 -11.96115 -11.94506 -11.67151 -11.33121 -11.20812 -10.98422 -10.79474 -10.63327 -9.82570 -8.73092 -6.48781 1.27388 1.50484 1.59395 1.68699 1.78894 1.88679 2.53238 2.67526 2.86898 2.93777 3.03460 3.11734 3.47305 3.67776 3.79874 3.91655 4.10487 4.18857 4.25302 4.29791 4.34613 4.60865 4.64253 4.79107 4.84963 4.87543 4.92950 4.98462 5.07187 5.20648 5.26612 5.36789 5.41112 5.52138 5.74736 6.08216 6.31139 6.40535 7.09563 7.32289 8.63355 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.013937 B = 0.005191 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.610186 B = 5392.858735 C = 6792.992546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.081 4.081 4 C -0.118 4.118 5 H 0.086 0.914 6 C -0.127 4.127 7 C -0.207 4.207 8 H 0.148 0.852 9 C 0.533 3.467 10 O -0.581 6.581 11 N -0.596 5.596 12 C 0.246 3.754 13 C -0.619 4.619 14 H 0.054 0.946 15 C -0.030 4.030 16 N -0.930 5.930 17 Si 1.120 2.880 18 H -0.282 1.282 19 H -0.258 1.258 20 H -0.279 1.279 21 C 0.073 3.927 22 C 0.435 3.565 23 F -0.184 7.184 24 F -0.171 7.171 25 F -0.196 7.196 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.146 0.854 35 H 0.026 0.974 36 H -0.007 1.007 37 H 0.254 0.746 38 H 0.158 0.842 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.585 1.338 10.408 21.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.118 4.118 4 C -0.137 4.137 5 H 0.105 0.895 6 C -0.164 4.164 7 C -0.228 4.228 8 H 0.166 0.834 9 C 0.324 3.676 10 O -0.461 6.461 11 N -0.326 5.326 12 C 0.125 3.875 13 C -0.657 4.657 14 H 0.073 0.927 15 C -0.228 4.228 16 N -0.567 5.567 17 Si 0.940 3.060 18 H -0.208 1.208 19 H -0.182 1.182 20 H -0.205 1.205 21 C -0.053 4.053 22 C 0.379 3.621 23 F -0.165 7.165 24 F -0.153 7.153 25 F -0.177 7.177 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.108 0.892 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.164 0.836 35 H 0.044 0.956 36 H 0.011 0.989 37 H 0.064 0.936 38 H 0.176 0.824 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -16.725 0.699 10.166 19.585 hybrid contribution -1.352 0.277 -1.200 1.829 sum -18.078 0.976 8.966 20.203 Atomic orbital electron populations 1.21755 0.94625 1.02071 1.02231 1.21501 0.96637 0.96032 1.01913 1.21234 0.89486 0.97974 1.03146 1.22468 0.96283 0.93586 1.01358 0.89527 1.23257 1.02770 1.00312 0.90036 1.22515 0.95868 1.00880 1.03489 0.83418 1.20588 0.85409 0.82122 0.79516 1.90640 1.70122 1.35023 1.50282 1.47808 1.23548 1.07456 1.53773 1.19022 0.81237 0.95685 0.91556 1.22512 0.93361 1.53570 0.96299 0.92739 1.27391 1.03359 0.92874 0.99225 1.70929 1.35089 1.46276 1.04391 0.82909 0.72221 0.77546 0.73295 1.20779 1.18213 1.20505 1.22931 0.99411 0.88330 0.94621 1.21538 0.80511 0.77753 0.82327 1.93133 1.59689 1.70485 1.93202 1.93193 1.88053 1.50039 1.83969 1.93182 1.77734 1.93039 1.53769 0.92324 0.91681 0.92863 0.93265 0.91427 0.89201 0.91741 0.89894 0.83613 0.95645 0.98907 0.93631 0.82436 0.84817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.91 71.98 0.71 -1.31 16 2 C -0.12 -2.11 5.89 30.59 0.18 -1.93 16 3 C -0.08 -1.48 5.50 30.59 0.17 -1.31 16 4 C -0.12 -3.01 5.25 -10.79 -0.06 -3.06 16 5 H 0.09 2.76 7.60 -2.39 -0.02 2.74 16 6 C -0.13 -2.84 9.88 30.60 0.30 -2.54 16 7 C -0.21 -5.85 4.17 -11.54 -0.05 -5.90 16 8 H 0.15 3.40 5.31 -2.39 -0.01 3.39 16 9 C 0.53 22.25 7.12 87.66 0.62 22.88 16 10 O -0.58 -30.50 15.84 -3.02 -0.05 -30.55 16 11 N -0.60 -24.77 2.37 -826.16 -1.96 -26.73 16 12 C 0.25 13.04 4.27 85.63 0.37 13.40 16 13 C -0.62 -35.04 9.39 25.60 0.24 -34.80 16 14 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 15 C -0.03 -1.73 5.46 84.65 0.46 -1.27 16 16 N -0.93 -57.74 13.65 21.45 0.29 -57.45 16 17 Si 1.12 50.08 29.90 68.60 2.05 52.13 16 18 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 19 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 20 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 21 C 0.07 2.13 5.22 86.38 0.45 2.58 16 22 C 0.43 12.48 3.29 71.98 0.24 12.72 16 23 F -0.18 -5.28 14.56 44.97 0.65 -4.62 16 24 F -0.17 -4.17 17.32 44.97 0.78 -3.39 16 25 F -0.20 -6.95 16.23 44.97 0.73 -6.22 16 26 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.09 1.21 7.87 -2.39 -0.02 1.20 16 32 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.15 2.03 8.03 -2.39 -0.02 2.01 16 35 H 0.03 1.36 7.13 -2.38 -0.02 1.34 16 36 H -0.01 -0.44 7.28 -2.39 -0.02 -0.45 16 37 H 0.25 16.09 7.22 -92.70 -0.67 15.42 16 38 H 0.16 3.23 6.64 -2.39 -0.02 3.21 16 39 H 0.13 3.79 8.07 -2.39 -0.02 3.77 16 Total: -1.00 -74.31 336.50 7.29 -67.02 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: 1.15 Total: 10.35 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: 3.64 Total: -0.54 kcal Atomic # 7 Polarization: -82.52 SS G_CDS: -1.67 Total: -84.18 kcal Atomic # 8 Polarization: -30.50 SS G_CDS: -0.05 Total: -30.55 kcal Atomic # 9 Polarization: -16.39 SS G_CDS: 2.16 Total: -14.22 kcal Atomic # 14 Polarization: 50.08 SS G_CDS: 2.05 Total: 52.13 kcal Total: -74.31 7.29 -67.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361859618.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.534 kcal (2) G-P(sol) polarization free energy of solvation -74.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds