Wall clock time and date at job start Tue Mar 31 2020 07:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.46993 * 2 1 4 4 C 1.53007 * 109.47020 * 179.97438 * 3 2 1 5 5 H 1.08999 * 115.54922 * 330.67052 * 4 3 2 6 6 C 1.53075 * 117.51099 * 116.38824 * 4 3 2 7 7 C 1.52997 * 59.98404 * 107.47815 * 6 4 3 8 8 H 1.09001 * 117.50310 * 252.49817 * 7 6 4 9 9 C 1.50700 * 117.49876 * 107.49493 * 7 6 4 10 10 O 1.21279 * 120.00444 * 291.26140 * 9 7 6 11 11 N 1.34778 * 119.99817 * 111.25561 * 9 7 6 12 12 C 1.46508 * 120.00043 * 180.02562 * 11 9 7 13 13 C 1.50704 * 109.46967 * 269.99815 * 12 11 9 14 14 H 1.08004 * 119.99939 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99657 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99947 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99660 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47279 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46917 * 120.00265 * 17 15 13 20 20 H 1.48496 * 109.47358 * 240.00208 * 17 15 13 21 21 C 1.46500 * 120.00194 * 0.02562 * 11 9 7 22 22 C 1.53006 * 109.47249 * 89.99637 * 21 11 9 23 23 F 1.39900 * 109.46764 * 60.00158 * 22 21 11 24 24 F 1.39897 * 109.47129 * 180.02562 * 22 21 11 25 25 F 1.39903 * 109.46814 * 300.00629 * 22 21 11 26 26 H 1.08993 * 109.47242 * 300.00212 * 1 2 3 27 27 H 1.08999 * 109.47134 * 60.00128 * 1 2 3 28 28 H 1.09004 * 109.47442 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47393 * 239.99747 * 2 1 3 30 30 H 1.08999 * 109.47134 * 119.99872 * 2 1 3 31 31 H 1.08996 * 109.47424 * 60.00339 * 3 2 1 32 32 H 1.09007 * 109.47305 * 299.99297 * 3 2 1 33 33 H 1.08999 * 117.49707 * 359.97438 * 6 4 3 34 34 H 1.09005 * 117.51365 * 214.95507 * 6 4 3 35 35 H 1.08992 * 109.47074 * 30.00207 * 12 11 9 36 36 H 1.09002 * 109.46662 * 150.00285 * 12 11 9 37 37 H 0.97001 * 119.99869 * 179.97438 * 16 15 13 38 38 H 1.09001 * 109.46596 * 330.00033 * 21 11 9 39 39 H 1.09000 * 109.47381 * 209.99785 * 21 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 4.0399 0.5852 0.4827 6 6 4.2776 2.0457 -1.2153 7 6 4.2764 2.7945 0.1189 8 1 3.6512 3.6840 0.1964 9 6 5.5686 2.8389 0.8930 10 8 6.0099 1.8270 1.3951 11 7 6.2339 4.0033 1.0274 12 6 7.4905 4.0464 1.7795 13 6 7.1985 4.3368 3.2292 14 1 6.1789 4.4749 3.5575 15 6 8.2329 4.4250 4.1365 16 7 9.4744 4.2563 3.7367 17 14 7.8709 4.7842 5.9335 18 1 6.4054 4.9307 6.1235 19 1 8.3688 3.6644 6.7721 20 1 8.5506 6.0424 6.3335 21 6 5.7007 5.2258 0.4213 22 6 4.7811 5.9311 1.4203 23 9 5.5065 6.2590 2.5707 24 9 4.2715 7.0983 0.8414 25 9 3.7242 5.0806 1.7621 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8901 33 1 3.6529 2.4421 -2.0158 34 1 5.2131 1.5853 -1.5333 35 1 7.9969 3.0849 1.6963 36 1 8.1300 4.8303 1.3736 37 1 10.2021 4.3188 4.3749 38 1 5.1355 4.9703 -0.4750 39 1 6.5242 5.8885 0.1551 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361859623.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:44 Heat of formation + Delta-G solvation = -178.776520 kcal Electronic energy + Delta-G solvation = -24933.669718 eV Core-core repulsion = 20847.760113 eV Total energy + Delta-G solvation = -4085.909606 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.134 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.59127 -47.21019 -46.91005 -39.64557 -37.11901 -35.23208 -33.87336 -32.67790 -29.24886 -27.87963 -26.92741 -24.23918 -23.11836 -22.17492 -21.70995 -20.45450 -18.75744 -18.05560 -17.94529 -17.46896 -16.41193 -16.15717 -15.55983 -15.21064 -14.72682 -14.45362 -14.03035 -13.87167 -13.81709 -13.57007 -13.50035 -13.23751 -13.14964 -13.05233 -12.63156 -12.42896 -12.31840 -12.07860 -11.90739 -11.67056 -11.36288 -11.27007 -11.05050 -10.89162 -10.86407 -10.65350 -10.15730 -10.09123 -9.83941 -9.60956 -9.09126 -8.42877 -8.00842 -6.04628 -4.06678 2.83445 3.32382 3.33249 3.39720 3.43664 3.52887 3.98675 4.30433 4.38397 4.47163 4.52094 4.75522 4.89061 4.90471 5.03125 5.12604 5.18709 5.31007 5.32426 5.42252 5.47875 5.48984 5.67730 5.72180 5.75241 5.80875 5.96587 6.05143 6.18128 6.20970 6.44972 6.84408 7.27523 7.36605 7.92423 8.09293 8.17791 8.79205 8.97984 9.57656 11.04361 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.015811 B = 0.005182 C = 0.004666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.456479 B = 5402.100003 C = 5999.968800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.089 4.089 4 C -0.118 4.118 5 H 0.117 0.883 6 C -0.153 4.153 7 C -0.197 4.197 8 H 0.123 0.877 9 C 0.543 3.457 10 O -0.522 6.522 11 N -0.595 5.595 12 C 0.243 3.757 13 C -0.521 4.521 14 H 0.065 0.935 15 C 0.063 3.937 16 N -0.897 5.897 17 Si 0.895 3.105 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.078 3.922 22 C 0.424 3.576 23 F -0.152 7.152 24 F -0.196 7.196 25 F -0.188 7.188 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.050 0.950 36 H 0.036 0.964 37 H 0.262 0.738 38 H 0.109 0.891 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.682 -0.453 -11.539 17.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.127 4.127 4 C -0.136 4.136 5 H 0.135 0.865 6 C -0.190 4.190 7 C -0.218 4.218 8 H 0.141 0.859 9 C 0.330 3.670 10 O -0.398 6.398 11 N -0.326 5.326 12 C 0.125 3.875 13 C -0.559 4.559 14 H 0.083 0.917 15 C -0.139 4.139 16 N -0.536 5.536 17 Si 0.723 3.277 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.050 4.050 22 C 0.368 3.632 23 F -0.133 7.133 24 F -0.178 7.178 25 F -0.169 7.169 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.072 0.928 38 H 0.127 0.873 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -13.230 -1.008 -11.155 17.334 hybrid contribution -0.239 0.644 1.301 1.472 sum -13.469 -0.365 -9.853 16.692 Atomic orbital electron populations 1.21779 0.96068 1.01431 1.01715 1.21500 0.95437 0.96698 1.02321 1.21229 0.92200 0.97124 1.02114 1.22402 0.94399 0.95921 1.00904 0.86474 1.23089 1.03006 1.02680 0.90264 1.22614 0.98703 0.98892 1.01616 0.85899 1.19498 0.84137 0.83357 0.79993 1.90677 1.67854 1.33488 1.47735 1.48141 1.26042 1.05013 1.53449 1.19501 0.78301 0.99117 0.90602 1.21524 0.93831 1.48037 0.92545 0.91716 1.24870 0.94856 0.95210 0.98963 1.69934 0.98665 1.50154 1.34878 0.86473 0.78546 0.77771 0.84909 1.19704 1.20959 1.20963 1.22549 0.98670 0.90097 0.93640 1.21570 0.80478 0.77136 0.84030 1.93373 1.76336 1.92534 1.51024 1.93133 1.88590 1.51465 1.84570 1.93110 1.59893 1.70659 1.93262 0.92736 0.92905 0.92897 0.91906 0.91737 0.91359 0.91828 0.88163 0.88370 0.93221 0.94615 0.92828 0.87259 0.86163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 37.16 0.37 -0.90 16 2 C -0.12 -1.18 5.89 -26.73 -0.16 -1.34 16 3 C -0.09 -0.96 5.50 -26.73 -0.15 -1.11 16 4 C -0.12 -1.58 5.25 -90.58 -0.48 -2.05 16 5 H 0.12 1.81 7.60 -51.93 -0.39 1.41 16 6 C -0.15 -1.82 9.88 -26.69 -0.26 -2.09 16 7 C -0.20 -2.96 4.17 -91.77 -0.38 -3.34 16 8 H 0.12 1.69 5.31 -51.93 -0.28 1.42 16 9 C 0.54 11.03 7.12 -10.99 -0.08 10.96 16 10 O -0.52 -12.86 15.84 5.56 0.09 -12.77 16 11 N -0.60 -12.07 2.40 -175.05 -0.42 -12.49 16 12 C 0.24 6.11 5.14 -5.19 -0.03 6.08 16 13 C -0.52 -14.51 7.68 -34.44 -0.26 -14.77 16 14 H 0.06 1.84 6.43 -52.48 -0.34 1.51 16 15 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 16 N -0.90 -26.39 13.29 55.43 0.74 -25.66 16 17 Si 0.90 22.29 29.54 -169.99 -5.02 17.27 16 18 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 C 0.08 1.20 5.27 -4.04 -0.02 1.18 16 22 C 0.42 7.13 3.29 37.16 0.12 7.26 16 23 F -0.15 -3.17 13.88 2.25 0.03 -3.14 16 24 F -0.20 -2.90 17.32 2.25 0.04 -2.86 16 25 F -0.19 -3.26 14.56 2.25 0.03 -3.23 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.60 7.88 -51.93 -0.41 0.19 16 33 H 0.10 0.92 8.03 -51.93 -0.42 0.50 16 34 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.05 1.41 7.42 -51.93 -0.39 1.02 16 36 H 0.04 0.89 7.89 -51.93 -0.41 0.48 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.11 1.25 6.64 -51.93 -0.34 0.91 16 39 H 0.12 1.63 7.89 -51.93 -0.41 1.22 16 LS Contribution 333.10 15.07 5.02 5.02 Total: -1.00 -32.21 333.10 -6.40 -38.61 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -5.48 Total: -2.31 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -1.42 Total: 1.55 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.32 Total: -38.15 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.09 Total: -12.77 kcal Atomic # 9 Polarization: -9.33 SS G_CDS: 0.10 Total: -9.22 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.21 -6.40 -38.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361859623.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.168 kcal (2) G-P(sol) polarization free energy of solvation -32.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds