Wall clock time and date at job start Tue Mar 31 2020 07:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.46993 * 2 1 4 4 C 1.53007 * 109.47020 * 179.97438 * 3 2 1 5 5 H 1.08999 * 115.54922 * 330.67052 * 4 3 2 6 6 C 1.53075 * 117.51099 * 116.38824 * 4 3 2 7 7 C 1.52997 * 59.98404 * 107.47815 * 6 4 3 8 8 H 1.09001 * 117.50310 * 252.49817 * 7 6 4 9 9 C 1.50700 * 117.49876 * 107.49493 * 7 6 4 10 10 O 1.21279 * 120.00444 * 291.26140 * 9 7 6 11 11 N 1.34778 * 119.99817 * 111.25561 * 9 7 6 12 12 C 1.46508 * 120.00043 * 180.02562 * 11 9 7 13 13 C 1.50704 * 109.46967 * 269.99815 * 12 11 9 14 14 H 1.08004 * 119.99939 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99657 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99947 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99660 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47279 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46917 * 120.00265 * 17 15 13 20 20 H 1.48496 * 109.47358 * 240.00208 * 17 15 13 21 21 C 1.46500 * 120.00194 * 0.02562 * 11 9 7 22 22 C 1.53006 * 109.47249 * 89.99637 * 21 11 9 23 23 F 1.39900 * 109.46764 * 60.00158 * 22 21 11 24 24 F 1.39897 * 109.47129 * 180.02562 * 22 21 11 25 25 F 1.39903 * 109.46814 * 300.00629 * 22 21 11 26 26 H 1.08993 * 109.47242 * 300.00212 * 1 2 3 27 27 H 1.08999 * 109.47134 * 60.00128 * 1 2 3 28 28 H 1.09004 * 109.47442 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47393 * 239.99747 * 2 1 3 30 30 H 1.08999 * 109.47134 * 119.99872 * 2 1 3 31 31 H 1.08996 * 109.47424 * 60.00339 * 3 2 1 32 32 H 1.09007 * 109.47305 * 299.99297 * 3 2 1 33 33 H 1.08999 * 117.49707 * 359.97438 * 6 4 3 34 34 H 1.09005 * 117.51365 * 214.95507 * 6 4 3 35 35 H 1.08992 * 109.47074 * 30.00207 * 12 11 9 36 36 H 1.09002 * 109.46662 * 150.00285 * 12 11 9 37 37 H 0.97001 * 119.99869 * 179.97438 * 16 15 13 38 38 H 1.09001 * 109.46596 * 330.00033 * 21 11 9 39 39 H 1.09000 * 109.47381 * 209.99785 * 21 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 4.0399 0.5852 0.4827 6 6 4.2776 2.0457 -1.2153 7 6 4.2764 2.7945 0.1189 8 1 3.6512 3.6840 0.1964 9 6 5.5686 2.8389 0.8930 10 8 6.0099 1.8270 1.3951 11 7 6.2339 4.0033 1.0274 12 6 7.4905 4.0464 1.7795 13 6 7.1985 4.3368 3.2292 14 1 6.1789 4.4749 3.5575 15 6 8.2329 4.4250 4.1365 16 7 9.4744 4.2563 3.7367 17 14 7.8709 4.7842 5.9335 18 1 6.4054 4.9307 6.1235 19 1 8.3688 3.6644 6.7721 20 1 8.5506 6.0424 6.3335 21 6 5.7007 5.2258 0.4213 22 6 4.7811 5.9311 1.4203 23 9 5.5065 6.2590 2.5707 24 9 4.2715 7.0983 0.8414 25 9 3.7242 5.0806 1.7621 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8901 33 1 3.6529 2.4421 -2.0158 34 1 5.2131 1.5853 -1.5333 35 1 7.9969 3.0849 1.6963 36 1 8.1300 4.8303 1.3736 37 1 10.2021 4.3188 4.3749 38 1 5.1355 4.9703 -0.4750 39 1 6.5242 5.8885 0.1551 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361859623.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:44 Heat of formation + Delta-G solvation = -197.319155 kcal Electronic energy + Delta-G solvation = -24934.473787 eV Core-core repulsion = 20847.760113 eV Total energy + Delta-G solvation = -4086.713675 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.134 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.95581 -48.51870 -48.37933 -41.12380 -38.31609 -36.88498 -34.92011 -34.59017 -30.90098 -29.26592 -28.16507 -25.92700 -24.54236 -23.54851 -22.70123 -21.45449 -20.19851 -19.52072 -19.33699 -18.90504 -18.33923 -17.68270 -17.13240 -16.38210 -16.03126 -15.95577 -15.38639 -15.26930 -15.15698 -15.00544 -14.86220 -14.59595 -14.54110 -14.26032 -14.10240 -13.72568 -13.65172 -13.31398 -13.26830 -13.04375 -12.86307 -12.80576 -12.60586 -12.18439 -12.17078 -11.90906 -11.66844 -11.64055 -11.14817 -10.89838 -10.68384 -10.61931 -9.78224 -8.22406 -6.30949 1.33385 1.34671 1.39376 1.47695 1.94898 2.03199 2.39138 2.81623 3.01750 3.06363 3.17431 3.25923 3.60686 3.75803 3.86742 4.06961 4.19539 4.24543 4.30605 4.34022 4.39794 4.66243 4.81890 4.88910 4.93278 4.96393 5.04211 5.11326 5.20359 5.23657 5.39581 5.43265 5.45895 5.54783 5.76280 6.04293 6.45801 6.74856 7.21407 7.38944 8.86143 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.015811 B = 0.005182 C = 0.004666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.456479 B = 5402.100003 C = 5999.968800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.082 4.082 4 C -0.124 4.124 5 H 0.087 0.913 6 C -0.121 4.121 7 C -0.208 4.208 8 H 0.143 0.857 9 C 0.534 3.466 10 O -0.580 6.580 11 N -0.600 5.600 12 C 0.257 3.743 13 C -0.526 4.526 14 H 0.054 0.946 15 C 0.013 3.987 16 N -0.927 5.927 17 Si 0.952 3.048 18 H -0.274 1.274 19 H -0.281 1.281 20 H -0.270 1.270 21 C 0.076 3.924 22 C 0.425 3.575 23 F -0.181 7.181 24 F -0.179 7.179 25 F -0.191 7.191 26 H 0.050 0.950 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.047 0.953 31 H 0.058 0.942 32 H 0.090 0.910 33 H 0.144 0.856 34 H 0.090 0.910 35 H 0.007 0.993 36 H 0.036 0.964 37 H 0.265 0.735 38 H 0.158 0.842 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.822 0.534 -13.247 20.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.120 4.120 4 C -0.143 4.143 5 H 0.105 0.895 6 C -0.158 4.158 7 C -0.229 4.229 8 H 0.161 0.839 9 C 0.324 3.676 10 O -0.460 6.460 11 N -0.330 5.330 12 C 0.137 3.863 13 C -0.565 4.565 14 H 0.073 0.927 15 C -0.186 4.186 16 N -0.567 5.567 17 Si 0.778 3.222 18 H -0.199 1.199 19 H -0.207 1.207 20 H -0.195 1.195 21 C -0.050 4.050 22 C 0.369 3.631 23 F -0.162 7.162 24 F -0.161 7.161 25 F -0.173 7.173 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.108 0.892 33 H 0.162 0.838 34 H 0.108 0.892 35 H 0.026 0.974 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.176 0.824 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -15.398 0.013 -12.888 20.080 hybrid contribution 0.409 0.323 1.791 1.866 sum -14.990 0.336 -11.097 18.653 Atomic orbital electron populations 1.21758 0.94767 1.02046 1.02156 1.21495 0.96531 0.96040 1.01930 1.21227 0.89925 0.97908 1.02901 1.22465 0.96084 0.93851 1.01852 0.89501 1.23270 1.02850 0.99933 0.89721 1.22521 0.96169 1.00629 1.03606 0.83940 1.20491 0.85340 0.82318 0.79422 1.90643 1.69665 1.35478 1.50214 1.48018 1.24794 1.07150 1.53058 1.18960 0.80484 0.96541 0.90311 1.21729 0.93261 1.47426 0.94074 0.92749 1.25637 0.94824 0.95280 1.02862 1.70024 0.99383 1.51137 1.36200 0.85590 0.78199 0.78074 0.80367 1.19878 1.20701 1.19521 1.22959 0.99635 0.88234 0.94150 1.21712 0.80476 0.77639 0.83298 1.93309 1.77170 1.92807 1.52937 1.93164 1.88330 1.50553 1.84044 1.93104 1.60021 1.70826 1.93339 0.93102 0.91623 0.92282 0.91165 0.93407 0.92295 0.89185 0.83783 0.89179 0.97449 0.94646 0.92571 0.82432 0.84303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.91 71.98 0.71 -1.44 16 2 C -0.12 -2.16 5.89 30.59 0.18 -1.98 16 3 C -0.08 -1.57 5.50 30.59 0.17 -1.41 16 4 C -0.12 -3.15 5.25 -10.77 -0.06 -3.20 16 5 H 0.09 2.76 7.60 -2.39 -0.02 2.74 16 6 C -0.12 -2.48 9.88 30.62 0.30 -2.18 16 7 C -0.21 -5.85 4.17 -11.54 -0.05 -5.90 16 8 H 0.14 3.44 5.31 -2.39 -0.01 3.43 16 9 C 0.53 21.88 7.12 87.66 0.62 22.51 16 10 O -0.58 -29.96 15.84 -3.03 -0.05 -30.01 16 11 N -0.60 -24.33 2.40 -826.12 -1.98 -26.31 16 12 C 0.26 13.36 5.14 85.63 0.44 13.80 16 13 C -0.53 -30.03 7.68 25.60 0.20 -29.84 16 14 H 0.05 3.17 6.43 -2.91 -0.02 3.15 16 15 C 0.01 0.74 5.46 84.66 0.46 1.20 16 16 N -0.93 -55.70 13.29 21.45 0.28 -55.41 16 17 Si 0.95 46.29 29.54 68.60 2.03 48.31 16 18 H -0.27 -13.27 7.11 99.48 0.71 -12.56 16 19 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 20 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 21 C 0.08 2.15 5.27 86.38 0.45 2.61 16 22 C 0.42 13.51 3.29 71.98 0.24 13.75 16 23 F -0.18 -7.50 13.88 44.97 0.62 -6.88 16 24 F -0.18 -4.80 17.32 44.97 0.78 -4.02 16 25 F -0.19 -6.31 14.56 44.97 0.65 -5.65 16 26 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.09 1.27 7.88 -2.38 -0.02 1.25 16 33 H 0.14 1.77 8.03 -2.39 -0.02 1.75 16 34 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 35 H 0.01 0.44 7.42 -2.39 -0.02 0.43 16 36 H 0.04 1.82 7.89 -2.39 -0.02 1.80 16 37 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 38 H 0.16 2.94 6.64 -2.39 -0.02 2.93 16 39 H 0.14 3.43 7.89 -2.39 -0.02 3.42 16 Total: -1.00 -73.46 333.10 7.07 -66.39 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: 1.06 Total: 5.66 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: 3.67 Total: 7.92 kcal Atomic # 7 Polarization: -80.03 SS G_CDS: -1.70 Total: -81.73 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -0.05 Total: -30.01 kcal Atomic # 9 Polarization: -18.61 SS G_CDS: 2.06 Total: -16.55 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.31 kcal Total: -73.46 7.07 -66.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361859623.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.925 kcal (2) G-P(sol) polarization free energy of solvation -73.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds