Wall clock time and date at job start Tue Mar 31 2020 07:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52997 * 109.47482 * 179.97438 * 3 2 1 5 5 H 1.08998 * 115.54779 * 330.58145 * 4 3 2 6 6 C 1.53003 * 117.50052 * 116.25507 * 4 3 2 7 7 C 1.53002 * 117.49966 * 184.91609 * 4 3 2 8 8 H 1.08999 * 117.50141 * 145.02336 * 7 4 3 9 9 C 1.50698 * 117.50042 * 359.97438 * 7 4 3 10 10 O 1.21281 * 120.00001 * 0.02562 * 9 7 4 11 11 N 1.34774 * 120.00344 * 180.02562 * 9 7 4 12 12 C 1.46498 * 120.00579 * 180.02562 * 11 9 7 13 13 C 1.50699 * 109.46999 * 89.99569 * 12 11 9 14 14 H 1.07993 * 120.00208 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99856 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00064 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99925 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.46763 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.46966 * 119.99871 * 17 15 13 20 20 H 1.48494 * 109.46770 * 239.99927 * 17 15 13 21 21 C 1.46504 * 119.99779 * 0.02562 * 11 9 7 22 22 C 1.52995 * 109.47458 * 89.99788 * 21 11 9 23 23 F 1.39905 * 109.47093 * 59.99975 * 22 21 11 24 24 F 1.39897 * 109.47117 * 179.97438 * 22 21 11 25 25 F 1.39898 * 109.47001 * 300.00240 * 22 21 11 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 30 30 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 31 31 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 32 32 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 33 33 H 1.08996 * 117.49735 * 214.98312 * 6 4 3 34 34 H 1.08997 * 117.49382 * 359.97438 * 6 4 3 35 35 H 1.08997 * 109.47502 * 209.99962 * 12 11 9 36 36 H 1.09001 * 109.46652 * 329.99968 * 12 11 9 37 37 H 0.97003 * 120.00248 * 180.02562 * 16 15 13 38 38 H 1.09004 * 109.47099 * 210.00462 * 21 11 9 39 39 H 1.09003 * 109.47275 * 329.99647 * 21 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 4.0399 0.5859 0.4840 6 6 4.2770 2.0426 -1.2163 7 6 4.2764 2.7946 0.1170 8 1 5.2113 2.8275 0.6765 9 6 3.4120 4.0245 0.2217 10 8 2.2038 3.9192 0.2121 11 7 3.9815 5.2416 0.3259 12 6 3.1412 6.4373 0.4282 13 6 2.8530 6.7260 1.8789 14 1 3.2557 6.0835 2.6478 15 6 2.0750 7.8106 2.2245 16 7 1.5841 8.5928 1.2882 17 14 1.7182 8.1690 4.0229 18 1 2.3810 7.1469 4.8721 19 1 2.2377 9.5157 4.3717 20 1 0.2520 8.1288 4.2541 21 6 5.4409 5.3689 0.3368 22 6 5.9491 5.5362 -1.0965 23 9 5.3850 6.6857 -1.6601 24 9 7.3427 5.6583 -1.0859 25 9 5.5842 4.4181 -1.8541 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9562 0.8900 33 1 5.2122 1.5810 -1.5333 34 1 3.6521 2.4370 -2.0175 35 1 3.6618 7.2863 -0.0148 36 1 2.2038 6.2690 -0.1020 37 1 1.0370 9.3561 1.5314 38 1 5.7253 6.2400 0.9272 39 1 5.8805 4.4733 0.7760 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361859624.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:46 Heat of formation + Delta-G solvation = -177.141119 kcal Electronic energy + Delta-G solvation = -24977.674607 eV Core-core repulsion = 20891.835918 eV Total energy + Delta-G solvation = -4085.838689 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.134 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.76986 -47.32958 -47.20818 -39.75491 -36.91224 -35.13155 -33.72617 -32.74237 -29.30958 -27.74151 -26.79568 -24.30199 -23.24925 -22.09442 -21.52560 -20.49116 -18.81877 -18.23319 -18.09895 -17.12501 -16.73346 -16.09314 -15.39856 -15.13112 -14.52482 -14.40845 -14.22371 -14.09933 -13.90316 -13.70635 -13.49802 -13.40685 -13.29975 -12.92698 -12.59027 -12.40166 -12.15676 -12.12371 -11.89305 -11.80704 -11.29458 -11.13539 -10.89410 -10.86912 -10.72092 -10.65245 -10.22049 -9.92300 -9.77325 -9.67669 -8.85273 -8.50172 -7.99237 -6.10977 -4.16640 2.84266 3.19070 3.26200 3.34273 3.37518 3.52808 4.02875 4.19053 4.30721 4.39414 4.45944 4.73932 4.92464 5.05848 5.15924 5.23500 5.23922 5.29263 5.36069 5.46042 5.58679 5.66838 5.83487 5.98093 6.00833 6.05232 6.11388 6.21571 6.37080 6.56647 6.84498 6.88603 7.29657 7.36938 7.84050 8.10962 8.13510 8.78686 8.92647 9.48806 10.97363 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.010330 B = 0.006869 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2709.935182 B = 4075.317295 C = 6239.853458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.082 4.082 4 C -0.117 4.117 5 H 0.106 0.894 6 C -0.143 4.143 7 C -0.196 4.196 8 H 0.116 0.884 9 C 0.542 3.458 10 O -0.516 6.516 11 N -0.594 5.594 12 C 0.243 3.757 13 C -0.531 4.531 14 H 0.059 0.941 15 C 0.063 3.937 16 N -0.891 5.891 17 Si 0.899 3.101 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.282 1.282 21 C 0.075 3.925 22 C 0.428 3.572 23 F -0.176 7.176 24 F -0.190 7.190 25 F -0.182 7.182 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.047 0.953 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.040 0.960 36 H 0.048 0.952 37 H 0.264 0.736 38 H 0.126 0.874 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.448 -12.614 -3.784 15.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.119 4.119 4 C -0.136 4.136 5 H 0.125 0.875 6 C -0.180 4.180 7 C -0.217 4.217 8 H 0.134 0.866 9 C 0.329 3.671 10 O -0.391 6.391 11 N -0.325 5.325 12 C 0.124 3.876 13 C -0.570 4.570 14 H 0.078 0.922 15 C -0.140 4.140 16 N -0.530 5.530 17 Si 0.726 3.274 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.208 1.208 21 C -0.053 4.053 22 C 0.371 3.629 23 F -0.158 7.158 24 F -0.172 7.172 25 F -0.163 7.163 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.144 0.856 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.636 -12.472 -3.844 15.120 hybrid contribution 0.155 0.507 0.760 0.927 sum 7.791 -11.965 -3.084 14.607 Atomic orbital electron populations 1.21748 0.96115 1.00803 1.02203 1.21578 0.95757 0.97607 1.01115 1.21263 0.91197 0.95077 1.04385 1.22416 0.96162 0.93949 1.01067 0.87550 1.22991 1.02547 1.01803 0.90695 1.22420 1.01870 0.93127 1.04277 0.86643 1.19509 0.88086 0.83213 0.76285 1.90683 1.14266 1.85345 1.48806 1.48159 1.03701 1.09076 1.71562 1.19486 0.90557 0.79750 0.97767 1.21421 1.32354 1.11267 0.91931 0.92237 1.24934 0.95352 0.95870 0.97813 1.69943 1.34245 1.16365 1.32420 0.86431 0.78250 0.78013 0.84661 1.19774 1.20898 1.20844 1.22587 0.85374 1.07530 0.89771 1.21683 0.74937 0.74118 0.92126 1.93215 1.84725 1.50580 1.87275 1.93146 1.31114 1.95867 1.97071 1.93179 1.91351 1.52668 1.79144 0.92768 0.92602 0.93364 0.92594 0.92601 0.91236 0.90012 0.88371 0.88412 0.94248 0.93356 0.92635 0.85591 0.87110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.91 37.16 0.37 -1.39 16 2 C -0.12 -1.45 5.89 -26.74 -0.16 -1.61 16 3 C -0.08 -1.21 3.75 -26.74 -0.10 -1.31 16 4 C -0.12 -1.54 5.73 -90.62 -0.52 -2.06 16 5 H 0.11 1.16 8.08 -51.93 -0.42 0.74 16 6 C -0.14 -1.82 8.31 -26.69 -0.22 -2.05 16 7 C -0.20 -2.87 4.42 -91.73 -0.41 -3.27 16 8 H 0.12 1.40 6.44 -51.93 -0.33 1.07 16 9 C 0.54 10.72 7.10 -10.99 -0.08 10.64 16 10 O -0.52 -12.07 12.68 5.56 0.07 -12.00 16 11 N -0.59 -11.97 2.37 -175.06 -0.42 -12.38 16 12 C 0.24 6.12 4.96 -5.20 -0.03 6.10 16 13 C -0.53 -14.49 9.39 -34.44 -0.32 -14.82 16 14 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 15 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 16 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16 17 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 18 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 C 0.08 1.15 5.33 -4.04 -0.02 1.13 16 22 C 0.43 6.48 3.29 37.15 0.12 6.60 16 23 F -0.18 -3.16 16.23 2.25 0.04 -3.12 16 24 F -0.19 -2.61 17.32 2.25 0.04 -2.57 16 25 F -0.18 -2.74 14.28 2.25 0.03 -2.71 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 1.16 7.29 -51.93 -0.38 0.78 16 32 H 0.08 1.44 6.93 -51.93 -0.36 1.08 16 33 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.10 1.39 8.03 -51.93 -0.42 0.97 16 35 H 0.04 1.02 7.25 -51.93 -0.38 0.64 16 36 H 0.05 1.39 7.42 -51.93 -0.39 1.00 16 37 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 38 H 0.13 1.86 8.07 -51.93 -0.42 1.44 16 39 H 0.11 1.31 6.00 -51.93 -0.31 1.00 16 LS Contribution 331.06 15.07 4.99 4.99 Total: -1.00 -30.80 331.06 -6.48 -37.27 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -5.48 Total: -0.15 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -1.46 Total: -0.39 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.32 Total: -37.68 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.07 Total: -12.00 kcal Atomic # 9 Polarization: -8.51 SS G_CDS: 0.11 Total: -8.40 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.80 -6.48 -37.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361859624.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.868 kcal (2) G-P(sol) polarization free energy of solvation -30.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds