Wall clock time and date at job start Tue Mar 31 2020 07:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52997 * 109.47482 * 179.97438 * 3 2 1 5 5 H 1.08998 * 115.54779 * 330.58145 * 4 3 2 6 6 C 1.53003 * 117.50052 * 116.25507 * 4 3 2 7 7 C 1.53002 * 117.49966 * 184.91609 * 4 3 2 8 8 H 1.08999 * 117.50141 * 145.02336 * 7 4 3 9 9 C 1.50698 * 117.50042 * 359.97438 * 7 4 3 10 10 O 1.21281 * 120.00001 * 0.02562 * 9 7 4 11 11 N 1.34774 * 120.00344 * 180.02562 * 9 7 4 12 12 C 1.46498 * 120.00579 * 180.02562 * 11 9 7 13 13 C 1.50699 * 109.46999 * 89.99569 * 12 11 9 14 14 H 1.07993 * 120.00208 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99856 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00064 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99925 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.46763 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.46966 * 119.99871 * 17 15 13 20 20 H 1.48494 * 109.46770 * 239.99927 * 17 15 13 21 21 C 1.46504 * 119.99779 * 0.02562 * 11 9 7 22 22 C 1.52995 * 109.47458 * 89.99788 * 21 11 9 23 23 F 1.39905 * 109.47093 * 59.99975 * 22 21 11 24 24 F 1.39897 * 109.47117 * 179.97438 * 22 21 11 25 25 F 1.39898 * 109.47001 * 300.00240 * 22 21 11 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 30 30 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 31 31 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 32 32 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 33 33 H 1.08996 * 117.49735 * 214.98312 * 6 4 3 34 34 H 1.08997 * 117.49382 * 359.97438 * 6 4 3 35 35 H 1.08997 * 109.47502 * 209.99962 * 12 11 9 36 36 H 1.09001 * 109.46652 * 329.99968 * 12 11 9 37 37 H 0.97003 * 120.00248 * 180.02562 * 16 15 13 38 38 H 1.09004 * 109.47099 * 210.00462 * 21 11 9 39 39 H 1.09003 * 109.47275 * 329.99647 * 21 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 4.0399 0.5859 0.4840 6 6 4.2770 2.0426 -1.2163 7 6 4.2764 2.7946 0.1170 8 1 5.2113 2.8275 0.6765 9 6 3.4120 4.0245 0.2217 10 8 2.2038 3.9192 0.2121 11 7 3.9815 5.2416 0.3259 12 6 3.1412 6.4373 0.4282 13 6 2.8530 6.7260 1.8789 14 1 3.2557 6.0835 2.6478 15 6 2.0750 7.8106 2.2245 16 7 1.5841 8.5928 1.2882 17 14 1.7182 8.1690 4.0229 18 1 2.3810 7.1469 4.8721 19 1 2.2377 9.5157 4.3717 20 1 0.2520 8.1288 4.2541 21 6 5.4409 5.3689 0.3368 22 6 5.9491 5.5362 -1.0965 23 9 5.3850 6.6857 -1.6601 24 9 7.3427 5.6583 -1.0859 25 9 5.5842 4.4181 -1.8541 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9562 0.8900 33 1 5.2122 1.5810 -1.5333 34 1 3.6521 2.4370 -2.0175 35 1 3.6618 7.2863 -0.0148 36 1 2.2038 6.2690 -0.1020 37 1 1.0370 9.3561 1.5314 38 1 5.7253 6.2400 0.9272 39 1 5.8805 4.4733 0.7760 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361859624.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:45 Heat of formation + Delta-G solvation = -194.367118 kcal Electronic energy + Delta-G solvation = -24978.421583 eV Core-core repulsion = 20891.835918 eV Total energy + Delta-G solvation = -4086.585665 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.134 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -51.01384 -48.53693 -48.50030 -41.19551 -38.21027 -36.73193 -34.96620 -34.60184 -30.93642 -29.26374 -28.11234 -25.99344 -24.59711 -23.53586 -22.65169 -21.61582 -20.20406 -19.49959 -19.38099 -18.81984 -18.21699 -17.73566 -17.03656 -16.27538 -16.19223 -15.65376 -15.55149 -15.40291 -15.25403 -14.94139 -14.86164 -14.67265 -14.62399 -14.26338 -14.04547 -13.80919 -13.60993 -13.47052 -13.18688 -13.12100 -12.98162 -12.80325 -12.60873 -12.25999 -12.02921 -11.89945 -11.73840 -11.65537 -11.00408 -10.86134 -10.66155 -10.38133 -9.72562 -8.24443 -6.38973 1.37077 1.39275 1.47093 1.50995 1.84631 2.08217 2.38552 2.86071 2.96802 3.06251 3.09021 3.22438 3.62485 3.71937 3.98310 4.01351 4.16148 4.26479 4.32817 4.37209 4.49629 4.67183 4.82901 4.92664 4.96184 5.02699 5.06238 5.11503 5.18589 5.21902 5.39916 5.43493 5.47297 5.68951 5.73729 6.00977 6.51000 6.70825 7.24424 7.38155 8.83878 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.010330 B = 0.006869 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2709.935182 B = 4075.317295 C = 6239.853458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.080 4.080 4 C -0.111 4.111 5 H 0.145 0.855 6 C -0.127 4.127 7 C -0.205 4.205 8 H 0.152 0.848 9 C 0.530 3.470 10 O -0.566 6.566 11 N -0.602 5.602 12 C 0.261 3.739 13 C -0.541 4.541 14 H 0.060 0.940 15 C 0.008 3.992 16 N -0.929 5.929 17 Si 0.968 3.032 18 H -0.263 1.263 19 H -0.270 1.270 20 H -0.285 1.285 21 C 0.072 3.928 22 C 0.434 3.566 23 F -0.198 7.198 24 F -0.176 7.176 25 F -0.179 7.179 26 H 0.042 0.958 27 H 0.040 0.960 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.037 0.963 32 H 0.044 0.956 33 H 0.136 0.864 34 H 0.075 0.925 35 H 0.027 0.973 36 H -0.001 1.001 37 H 0.267 0.733 38 H 0.130 0.870 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.814 -14.829 -2.658 18.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C -0.118 4.118 4 C -0.130 4.130 5 H 0.162 0.838 6 C -0.164 4.164 7 C -0.226 4.226 8 H 0.170 0.830 9 C 0.320 3.680 10 O -0.445 6.445 11 N -0.332 5.332 12 C 0.140 3.860 13 C -0.580 4.580 14 H 0.079 0.921 15 C -0.191 4.191 16 N -0.569 5.569 17 Si 0.793 3.207 18 H -0.187 1.187 19 H -0.196 1.196 20 H -0.211 1.211 21 C -0.054 4.054 22 C 0.378 3.622 23 F -0.180 7.180 24 F -0.158 7.158 25 F -0.161 7.161 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.154 0.846 34 H 0.093 0.907 35 H 0.045 0.955 36 H 0.017 0.983 37 H 0.076 0.924 38 H 0.148 0.852 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 10.054 -14.704 -2.727 18.020 hybrid contribution -0.599 1.191 0.337 1.375 sum 9.454 -13.512 -2.391 16.664 Atomic orbital electron populations 1.21778 0.96492 1.01881 1.00982 1.21535 0.95477 0.95524 1.02737 1.21131 0.93092 0.96457 1.01074 1.22584 0.94764 0.94113 1.01507 0.83758 1.23079 1.03582 1.00396 0.89327 1.22450 1.02462 0.90919 1.06722 0.83013 1.20538 0.88228 0.84401 0.74797 1.90669 1.16844 1.86167 1.50805 1.48042 1.05619 1.07834 1.71729 1.18858 0.89385 0.81501 0.96214 1.21710 1.32299 1.11198 0.92747 0.92143 1.25866 0.95088 0.95734 1.02433 1.70071 1.35030 1.16997 1.34756 0.85353 0.77770 0.78461 0.79140 1.18711 1.19557 1.21077 1.22907 0.82289 1.10019 0.90153 1.21540 0.75393 0.73490 0.91781 1.93182 1.85233 1.51915 1.87628 1.93176 1.29812 1.95772 1.96991 1.93182 1.91422 1.52357 1.79118 0.93876 0.94059 0.91044 0.90856 0.90808 0.94390 0.93738 0.84565 0.90653 0.95475 0.98328 0.92421 0.85174 0.82648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 9.91 71.98 0.71 -2.82 16 2 C -0.12 -2.54 5.89 30.59 0.18 -2.36 16 3 C -0.08 -2.38 3.75 30.59 0.11 -2.27 16 4 C -0.11 -2.63 5.73 -10.79 -0.06 -2.69 16 5 H 0.14 2.38 8.08 -2.39 -0.02 2.37 16 6 C -0.13 -2.86 8.31 30.62 0.25 -2.61 16 7 C -0.20 -5.49 4.42 -11.51 -0.05 -5.54 16 8 H 0.15 2.93 6.44 -2.39 -0.02 2.92 16 9 C 0.53 21.25 7.10 87.66 0.62 21.88 16 10 O -0.57 -28.09 12.68 -3.03 -0.04 -28.13 16 11 N -0.60 -24.54 2.37 -826.16 -1.96 -26.50 16 12 C 0.26 13.83 4.96 85.63 0.42 14.25 16 13 C -0.54 -30.27 9.39 25.60 0.24 -30.03 16 14 H 0.06 3.29 7.81 -2.91 -0.02 3.27 16 15 C 0.01 0.45 5.46 84.66 0.46 0.91 16 16 N -0.93 -56.04 13.29 21.45 0.28 -55.75 16 17 Si 0.97 44.22 29.54 68.60 2.03 46.25 16 18 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 19 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 20 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 21 C 0.07 2.08 5.33 86.38 0.46 2.54 16 22 C 0.43 12.48 3.29 71.98 0.24 12.72 16 23 F -0.20 -7.15 16.23 44.97 0.73 -6.42 16 24 F -0.18 -4.36 17.32 44.97 0.78 -3.58 16 25 F -0.18 -5.06 14.28 44.97 0.64 -4.41 16 26 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 29 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.04 1.33 7.29 -2.39 -0.02 1.32 16 32 H 0.04 1.65 6.93 -2.39 -0.02 1.63 16 33 H 0.14 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.07 2.08 8.03 -2.39 -0.02 2.06 16 35 H 0.03 1.48 7.25 -2.39 -0.02 1.47 16 36 H 0.00 -0.09 7.42 -2.39 -0.02 -0.11 16 37 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 38 H 0.13 3.66 8.07 -2.39 -0.02 3.64 16 39 H 0.16 3.04 6.00 -2.39 -0.01 3.03 16 Total: -1.00 -71.74 331.06 7.11 -64.63 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: 1.05 Total: 9.93 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 3.60 Total: 3.99 kcal Atomic # 7 Polarization: -80.58 SS G_CDS: -1.68 Total: -82.25 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.04 Total: -28.13 kcal Atomic # 9 Polarization: -16.56 SS G_CDS: 2.15 Total: -14.41 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -71.74 7.11 -64.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361859624.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.737 kcal (2) G-P(sol) polarization free energy of solvation -71.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds