Wall clock time and date at job start Tue Mar 31 2020 06:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42897 * 114.00204 * 2 1 4 4 C 1.53002 * 109.47188 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.46932 * 65.00037 * 4 3 2 6 6 C 1.46502 * 120.00154 * 84.49257 * 5 4 3 7 7 C 1.50707 * 109.46905 * 89.99960 * 6 5 4 8 8 H 1.08000 * 119.99998 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99736 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99462 * 179.97438 * 9 7 6 11 11 Si 1.86794 * 120.00137 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.47159 * 89.99829 * 11 9 7 13 13 H 1.48497 * 109.47182 * 210.00102 * 11 9 7 14 14 H 1.48502 * 109.47225 * 330.00209 * 11 9 7 15 15 C 1.34782 * 119.99981 * 264.49291 * 5 4 3 16 16 O 1.21549 * 120.00176 * 184.39509 * 15 5 4 17 17 C 1.47862 * 120.00093 * 4.39160 * 15 5 4 18 18 C 1.39517 * 120.11941 * 301.27365 * 17 15 5 19 19 C 1.38447 * 119.79721 * 179.97438 * 18 17 15 20 20 O 1.35915 * 119.99193 * 180.02562 * 19 18 17 21 21 C 1.38859 * 120.02947 * 359.97438 * 19 18 17 22 22 C 1.38242 * 120.23696 * 0.02562 * 21 19 18 23 23 C 1.38014 * 120.20731 * 359.74284 * 22 21 19 24 24 C 1.50691 * 120.01885 * 180.25401 * 23 22 21 25 25 H 1.09005 * 109.46470 * 60.00043 * 1 2 3 26 26 H 1.08997 * 109.47034 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47181 * 300.00256 * 1 2 3 28 28 H 1.09000 * 109.46962 * 59.99710 * 3 2 1 29 29 H 1.09002 * 109.47221 * 299.99723 * 3 2 1 30 30 H 1.09001 * 109.47176 * 185.00141 * 4 3 2 31 31 H 1.08997 * 109.46941 * 305.00070 * 4 3 2 32 32 H 1.08993 * 109.47143 * 209.99419 * 6 5 4 33 33 H 1.08996 * 109.46706 * 329.99868 * 6 5 4 34 34 H 0.97009 * 119.99663 * 179.97438 * 10 9 7 35 35 H 1.08010 * 120.10458 * 359.95405 * 18 17 15 36 36 H 0.96695 * 114.00241 * 89.99984 * 20 19 18 37 37 H 1.08005 * 119.88397 * 180.02562 * 21 19 18 38 38 H 1.08003 * 119.90042 * 179.97438 * 22 21 19 39 39 H 1.09002 * 109.47222 * 265.07288 * 24 23 22 40 40 H 1.09002 * 109.47517 * 25.07431 * 24 23 22 41 41 H 1.09001 * 109.47372 * 145.06969 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.1722 1.3864 -2.4474 7 6 5.5938 1.8849 -2.4875 8 1 6.2827 1.6163 -1.7002 9 6 6.0147 2.6848 -3.5287 10 7 7.2551 3.1202 -3.5634 11 14 4.8230 3.1498 -4.8899 12 1 4.1278 4.4115 -4.5294 13 1 5.5709 3.3417 -6.1583 14 1 3.8230 2.0660 -5.0640 15 6 4.2028 -0.7639 -1.3015 16 8 4.6450 -1.2668 -2.3159 17 6 3.9130 -1.6087 -0.1231 18 6 4.5443 -1.3523 1.0944 19 6 4.2676 -2.1472 2.1936 20 8 4.8798 -1.9006 3.3818 21 6 3.3639 -3.1957 2.0832 22 6 2.7377 -3.4509 0.8775 23 6 3.0027 -2.6618 -0.2234 24 6 2.3134 -2.9403 -1.5341 25 1 -0.3632 0.5139 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.6887 1.8463 0.8900 29 1 1.6888 1.8463 -0.8900 30 1 3.9786 2.1764 0.0902 31 1 3.8508 0.5684 0.8427 32 1 3.9718 0.7881 -3.3361 33 1 3.4898 2.2358 -2.4196 34 1 7.5514 3.6827 -4.2961 35 1 5.2469 -0.5363 1.1791 36 1 4.3982 -1.2863 3.9524 37 1 3.1495 -3.8141 2.9424 38 1 2.0362 -4.2682 0.7976 39 1 2.9525 -3.5686 -2.1545 40 1 1.3704 -3.4540 -1.3469 41 1 2.1185 -1.9996 -2.0492 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394196034.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:59 Heat of formation + Delta-G solvation = -87.054025 kcal Electronic energy + Delta-G solvation = -24709.322363 eV Core-core repulsion = 21169.246884 eV Total energy + Delta-G solvation = -3540.075479 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.22290 -38.64213 -37.61296 -36.57950 -35.00915 -32.68484 -31.60890 -31.15478 -29.77207 -27.75562 -26.36891 -26.03712 -23.81168 -22.88235 -22.05047 -21.24467 -19.23641 -17.74460 -16.97612 -16.58905 -16.41864 -15.89142 -15.66689 -15.45623 -15.22010 -14.97761 -14.44842 -14.17196 -13.56245 -13.43620 -13.27750 -13.16208 -12.57124 -12.44816 -12.28656 -11.99555 -11.81171 -11.71385 -11.52595 -11.46248 -11.33701 -11.00078 -10.87527 -10.61817 -10.53262 -10.12211 -9.61364 -9.50674 -9.10062 -8.69954 -8.59742 -8.26875 -7.72811 -6.09058 -4.07852 1.25139 1.38496 3.24809 3.25751 3.33856 3.37774 3.68364 3.87926 3.99126 4.26435 4.38679 4.85952 4.95627 5.07932 5.18274 5.20585 5.25195 5.29601 5.38109 5.44571 5.46844 5.56302 5.63355 5.75768 5.84057 5.84711 5.93963 6.01557 6.08954 6.29705 6.35903 6.45376 6.61258 6.72035 6.86235 6.97409 7.18999 7.37597 7.59862 7.68047 8.21612 8.45968 8.92415 8.98200 9.50972 11.04345 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.017288 B = 0.005429 C = 0.005062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.248191 B = 5156.702635 C = 5529.734284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.376 6.376 3 C 0.042 3.958 4 C 0.102 3.898 5 N -0.582 5.582 6 C 0.218 3.782 7 C -0.528 4.528 8 H 0.075 0.925 9 C 0.073 3.927 10 N -0.896 5.896 11 Si 0.873 3.127 12 H -0.276 1.276 13 H -0.283 1.283 14 H -0.264 1.264 15 C 0.561 3.439 16 O -0.529 6.529 17 C -0.076 4.076 18 C -0.116 4.116 19 C 0.090 3.910 20 O -0.498 6.498 21 C -0.134 4.134 22 C -0.111 4.111 23 C -0.035 4.035 24 C -0.111 4.111 25 H 0.037 0.963 26 H 0.080 0.920 27 H 0.035 0.965 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.041 0.959 33 H 0.024 0.976 34 H 0.265 0.735 35 H 0.134 0.866 36 H 0.386 0.614 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.075 0.925 40 H 0.061 0.939 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.351 -7.557 12.696 21.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.295 6.295 3 C -0.036 4.036 4 C -0.023 4.023 5 N -0.312 5.312 6 C 0.097 3.903 7 C -0.567 4.567 8 H 0.093 0.907 9 C -0.129 4.129 10 N -0.535 5.535 11 Si 0.700 3.300 12 H -0.201 1.201 13 H -0.209 1.209 14 H -0.189 1.189 15 C 0.347 3.653 16 O -0.406 6.406 17 C -0.080 4.080 18 C -0.135 4.135 19 C 0.046 3.954 20 O -0.308 6.308 21 C -0.152 4.152 22 C -0.129 4.129 23 C -0.036 4.036 24 C -0.167 4.167 25 H 0.055 0.945 26 H 0.099 0.901 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.117 0.883 31 H 0.105 0.895 32 H 0.059 0.941 33 H 0.042 0.958 34 H 0.074 0.926 35 H 0.151 0.849 36 H 0.241 0.759 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.438 -8.235 11.792 20.380 hybrid contribution -1.011 1.113 -0.406 1.558 sum -15.449 -7.122 11.386 20.470 Atomic orbital electron populations 1.22660 0.82047 1.02186 0.99434 1.88000 1.18712 1.27473 1.95279 1.23096 0.95155 0.85104 1.00257 1.21824 0.91446 1.00755 0.88231 1.47745 1.64988 1.06569 1.11925 1.19660 0.97433 0.89757 0.83410 1.21325 0.94924 1.30418 1.10002 0.90664 1.24848 0.95088 0.95497 0.97504 1.69898 1.16018 1.35095 1.32452 0.86886 0.81667 0.79149 0.82280 1.20145 1.20896 1.18873 1.18086 0.78032 0.82079 0.87071 1.90773 1.44222 1.73148 1.32431 1.19756 0.97821 0.96788 0.93604 1.21480 1.00332 0.99726 0.91933 1.18216 0.95227 0.95989 0.85964 1.84857 1.50108 1.68263 1.27570 1.21365 0.96810 0.98521 0.98525 1.20754 1.00591 0.99603 0.91951 1.19746 0.94882 0.93088 0.95891 1.20762 0.99100 1.02845 0.93998 0.94481 0.90123 0.94630 0.92881 0.92908 0.88318 0.89459 0.94150 0.95787 0.92557 0.84872 0.75933 0.85735 0.85650 0.90684 0.92052 0.91098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.46 16 2 O -0.38 -5.12 8.90 -35.23 -0.31 -5.43 16 3 C 0.04 0.56 6.28 37.16 0.23 0.79 16 4 C 0.10 1.62 5.70 -4.04 -0.02 1.59 16 5 N -0.58 -12.11 2.41 -176.17 -0.43 -12.54 16 6 C 0.22 5.28 4.22 -5.19 -0.02 5.26 16 7 C -0.53 -15.11 9.94 -34.44 -0.34 -15.45 16 8 H 0.08 2.37 8.06 -52.49 -0.42 1.94 16 9 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 10 N -0.90 -27.62 13.96 55.43 0.77 -26.85 16 11 Si 0.87 21.40 27.47 -169.99 -4.67 16.73 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 15 C 0.56 12.09 5.79 -12.32 -0.07 12.02 16 16 O -0.53 -13.58 16.11 5.32 0.09 -13.50 16 17 C -0.08 -1.34 3.90 -104.99 -0.41 -1.75 16 18 C -0.12 -1.82 7.50 -39.03 -0.29 -2.11 16 19 C 0.09 1.21 6.70 -39.27 -0.26 0.95 16 20 O -0.50 -5.86 13.50 -19.47 -0.26 -6.13 16 21 C -0.13 -1.61 9.98 -39.35 -0.39 -2.00 16 22 C -0.11 -1.37 9.66 -39.66 -0.38 -1.75 16 23 C -0.04 -0.53 5.47 -104.21 -0.57 -1.10 16 24 C -0.11 -1.59 9.13 36.00 0.33 -1.26 16 25 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 30 H 0.10 1.54 8.11 -51.93 -0.42 1.12 16 31 H 0.09 1.27 4.14 -51.93 -0.22 1.06 16 32 H 0.04 1.06 6.54 -51.93 -0.34 0.72 16 33 H 0.02 0.54 7.48 -51.93 -0.39 0.15 16 34 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 35 H 0.13 2.11 7.27 -52.48 -0.38 1.73 16 36 H 0.39 2.57 9.06 45.56 0.41 2.98 16 37 H 0.12 1.20 8.06 -52.48 -0.42 0.77 16 38 H 0.13 1.20 8.06 -52.48 -0.42 0.77 16 39 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.06 0.68 8.05 -51.93 -0.42 0.26 16 41 H 0.07 1.17 7.24 -51.93 -0.38 0.79 16 LS Contribution 343.06 15.07 5.17 5.17 Total: -1.00 -35.59 343.06 -5.93 -41.52 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -5.10 Total: 2.33 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -1.19 Total: -1.32 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 0.35 Total: -39.38 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -0.49 Total: -25.05 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.59 -5.93 -41.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394196034.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.535 kcal (2) G-P(sol) polarization free energy of solvation -35.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds