Wall clock time and date at job start Tue Mar 31 2020 06:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42897 * 114.00204 * 2 1 4 4 C 1.53002 * 109.47188 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.46932 * 65.00037 * 4 3 2 6 6 C 1.46502 * 120.00154 * 84.49257 * 5 4 3 7 7 C 1.50707 * 109.46905 * 89.99960 * 6 5 4 8 8 H 1.08000 * 119.99998 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99736 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99462 * 179.97438 * 9 7 6 11 11 Si 1.86794 * 120.00137 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.47159 * 89.99829 * 11 9 7 13 13 H 1.48497 * 109.47182 * 210.00102 * 11 9 7 14 14 H 1.48502 * 109.47225 * 330.00209 * 11 9 7 15 15 C 1.34782 * 119.99981 * 264.49291 * 5 4 3 16 16 O 1.21549 * 120.00176 * 184.39509 * 15 5 4 17 17 C 1.47862 * 120.00093 * 4.39160 * 15 5 4 18 18 C 1.39517 * 120.11941 * 301.27365 * 17 15 5 19 19 C 1.38447 * 119.79721 * 179.97438 * 18 17 15 20 20 O 1.35915 * 119.99193 * 180.02562 * 19 18 17 21 21 C 1.38859 * 120.02947 * 359.97438 * 19 18 17 22 22 C 1.38242 * 120.23696 * 0.02562 * 21 19 18 23 23 C 1.38014 * 120.20731 * 359.74284 * 22 21 19 24 24 C 1.50691 * 120.01885 * 180.25401 * 23 22 21 25 25 H 1.09005 * 109.46470 * 60.00043 * 1 2 3 26 26 H 1.08997 * 109.47034 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47181 * 300.00256 * 1 2 3 28 28 H 1.09000 * 109.46962 * 59.99710 * 3 2 1 29 29 H 1.09002 * 109.47221 * 299.99723 * 3 2 1 30 30 H 1.09001 * 109.47176 * 185.00141 * 4 3 2 31 31 H 1.08997 * 109.46941 * 305.00070 * 4 3 2 32 32 H 1.08993 * 109.47143 * 209.99419 * 6 5 4 33 33 H 1.08996 * 109.46706 * 329.99868 * 6 5 4 34 34 H 0.97009 * 119.99663 * 179.97438 * 10 9 7 35 35 H 1.08010 * 120.10458 * 359.95405 * 18 17 15 36 36 H 0.96695 * 114.00241 * 89.99984 * 20 19 18 37 37 H 1.08005 * 119.88397 * 180.02562 * 21 19 18 38 38 H 1.08003 * 119.90042 * 179.97438 * 22 21 19 39 39 H 1.09002 * 109.47222 * 265.07288 * 24 23 22 40 40 H 1.09002 * 109.47517 * 25.07431 * 24 23 22 41 41 H 1.09001 * 109.47372 * 145.06969 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.1722 1.3864 -2.4474 7 6 5.5938 1.8849 -2.4875 8 1 6.2827 1.6163 -1.7002 9 6 6.0147 2.6848 -3.5287 10 7 7.2551 3.1202 -3.5634 11 14 4.8230 3.1498 -4.8899 12 1 4.1278 4.4115 -4.5294 13 1 5.5709 3.3417 -6.1583 14 1 3.8230 2.0660 -5.0640 15 6 4.2028 -0.7639 -1.3015 16 8 4.6450 -1.2668 -2.3159 17 6 3.9130 -1.6087 -0.1231 18 6 4.5443 -1.3523 1.0944 19 6 4.2676 -2.1472 2.1936 20 8 4.8798 -1.9006 3.3818 21 6 3.3639 -3.1957 2.0832 22 6 2.7377 -3.4509 0.8775 23 6 3.0027 -2.6618 -0.2234 24 6 2.3134 -2.9403 -1.5341 25 1 -0.3632 0.5139 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.6887 1.8463 0.8900 29 1 1.6888 1.8463 -0.8900 30 1 3.9786 2.1764 0.0902 31 1 3.8508 0.5684 0.8427 32 1 3.9718 0.7881 -3.3361 33 1 3.4898 2.2358 -2.4196 34 1 7.5514 3.6827 -4.2961 35 1 5.2469 -0.5363 1.1791 36 1 4.3982 -1.2863 3.9524 37 1 3.1495 -3.8141 2.9424 38 1 2.0362 -4.2682 0.7976 39 1 2.9525 -3.5686 -2.1545 40 1 1.3704 -3.4540 -1.3469 41 1 2.1185 -1.9996 -2.0492 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394196034.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:58 Heat of formation + Delta-G solvation = -114.083156 kcal Electronic energy + Delta-G solvation = -24710.494435 eV Core-core repulsion = 21169.246884 eV Total energy + Delta-G solvation = -3541.247551 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.54407 -39.91306 -38.70010 -37.66080 -36.64062 -34.79722 -32.72277 -32.45347 -31.17268 -29.48884 -27.42657 -27.02531 -25.30832 -24.36541 -23.33778 -22.49855 -20.57278 -19.16323 -19.00629 -17.92735 -17.59366 -17.08024 -16.82210 -16.70438 -16.45682 -16.30821 -15.77605 -15.57224 -14.94878 -14.81777 -14.58956 -14.41588 -14.35073 -13.72514 -13.55194 -13.48920 -13.19258 -13.09962 -12.76010 -12.63193 -12.55886 -12.44382 -12.35137 -12.02614 -11.92534 -11.79306 -11.68829 -10.84314 -10.70517 -10.49822 -9.87448 -9.45049 -9.33624 -8.35601 -6.41148 0.12016 0.32418 1.29154 1.34636 1.45261 1.76442 2.21235 2.29558 2.71960 2.96790 2.97981 3.28523 3.61906 3.90410 4.03518 4.11554 4.14916 4.20881 4.44251 4.49333 4.58152 4.61203 4.65860 4.70542 4.72945 4.77900 4.78558 4.85982 4.92991 4.93692 5.00050 5.20031 5.29974 5.41475 5.42824 5.56621 5.62507 5.88247 6.20797 6.35415 6.58942 6.61137 6.90859 7.17962 7.34273 8.81580 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.017288 B = 0.005429 C = 0.005062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.248191 B = 5156.702635 C = 5529.734284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.396 6.396 3 C 0.050 3.950 4 C 0.094 3.906 5 N -0.586 5.586 6 C 0.229 3.771 7 C -0.537 4.537 8 H 0.026 0.974 9 C 0.013 3.987 10 N -0.944 5.944 11 Si 0.948 3.052 12 H -0.247 1.247 13 H -0.281 1.281 14 H -0.257 1.257 15 C 0.555 3.445 16 O -0.588 6.588 17 C -0.098 4.098 18 C -0.133 4.133 19 C 0.099 3.901 20 O -0.506 6.506 21 C -0.120 4.120 22 C -0.097 4.097 23 C -0.047 4.047 24 C -0.105 4.105 25 H 0.034 0.966 26 H 0.093 0.907 27 H 0.055 0.945 28 H 0.089 0.911 29 H 0.044 0.956 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.018 0.982 33 H 0.050 0.950 34 H 0.269 0.731 35 H 0.117 0.883 36 H 0.410 0.590 37 H 0.161 0.839 38 H 0.165 0.835 39 H 0.060 0.940 40 H 0.099 0.901 41 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.703 -8.529 14.646 25.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.315 6.315 3 C -0.027 4.027 4 C -0.028 4.028 5 N -0.316 5.316 6 C 0.107 3.893 7 C -0.575 4.575 8 H 0.045 0.955 9 C -0.185 4.185 10 N -0.584 5.584 11 Si 0.770 3.230 12 H -0.171 1.171 13 H -0.206 1.206 14 H -0.182 1.182 15 C 0.344 3.656 16 O -0.469 6.469 17 C -0.101 4.101 18 C -0.152 4.152 19 C 0.054 3.946 20 O -0.319 6.319 21 C -0.139 4.139 22 C -0.114 4.114 23 C -0.048 4.048 24 C -0.162 4.162 25 H 0.053 0.947 26 H 0.111 0.889 27 H 0.074 0.926 28 H 0.107 0.893 29 H 0.062 0.938 30 H 0.113 0.887 31 H 0.119 0.881 32 H 0.036 0.964 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.135 0.865 36 H 0.269 0.731 37 H 0.178 0.822 38 H 0.182 0.818 39 H 0.079 0.921 40 H 0.118 0.882 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -17.829 -9.176 13.818 24.352 hybrid contribution 0.099 1.354 -0.842 1.598 sum -17.730 -7.822 12.975 23.321 Atomic orbital electron populations 1.22835 0.80184 1.03365 1.00284 1.87977 1.20701 1.27320 1.95468 1.22948 0.92715 0.85573 1.01502 1.22101 0.93935 1.00363 0.86431 1.47820 1.64669 1.06564 1.12506 1.19309 0.95115 0.90375 0.84533 1.21521 0.96459 1.30589 1.08967 0.95516 1.25847 0.97105 0.95254 1.00339 1.70057 1.18404 1.36213 1.33754 0.85718 0.79166 0.79926 0.78212 1.17139 1.20647 1.18157 1.18854 0.76577 0.82433 0.87750 1.90713 1.46917 1.74263 1.35045 1.19460 1.00387 0.97815 0.92403 1.21398 1.00792 1.00552 0.92477 1.18234 0.94872 0.95719 0.85738 1.84800 1.50919 1.69072 1.27074 1.21745 0.95073 0.97541 0.99516 1.21131 1.00328 0.99311 0.90661 1.19922 0.94733 0.92974 0.97156 1.20714 1.00599 1.01434 0.93434 0.94703 0.88855 0.92634 0.89327 0.93763 0.88650 0.88141 0.96437 0.93200 0.92208 0.86483 0.73117 0.82164 0.81801 0.92100 0.88220 0.94076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 113.37 1.25 1.77 16 2 O -0.40 -10.06 8.90 -148.98 -1.33 -11.38 16 3 C 0.05 1.26 6.28 71.98 0.45 1.72 16 4 C 0.09 3.03 5.70 86.38 0.49 3.53 16 5 N -0.59 -25.53 2.41 -829.55 -2.00 -27.53 16 6 C 0.23 11.51 4.22 85.63 0.36 11.88 16 7 C -0.54 -32.40 9.94 25.60 0.25 -32.15 16 8 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16 9 C 0.01 0.76 5.47 84.65 0.46 1.22 16 10 N -0.94 -60.55 13.96 21.45 0.30 -60.25 16 11 Si 0.95 44.85 27.47 68.60 1.88 46.74 16 12 H -0.25 -10.57 7.11 99.48 0.71 -9.86 16 13 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 14 H -0.26 -11.83 6.54 99.48 0.65 -11.18 16 15 C 0.55 25.25 5.79 86.79 0.50 25.76 16 16 O -0.59 -32.39 16.11 -3.87 -0.06 -32.45 16 17 C -0.10 -3.46 3.90 -20.10 -0.08 -3.53 16 18 C -0.13 -4.17 7.50 22.63 0.17 -4.00 16 19 C 0.10 2.41 6.70 22.47 0.15 2.57 16 20 O -0.51 -10.47 13.50 -92.59 -1.25 -11.72 16 21 C -0.12 -2.37 9.98 22.42 0.22 -2.14 16 22 C -0.10 -1.99 9.66 22.22 0.21 -1.78 16 23 C -0.05 -1.36 5.47 -19.60 -0.11 -1.46 16 24 C -0.11 -2.95 9.13 71.23 0.65 -2.30 16 25 H 0.03 0.62 8.14 -2.38 -0.02 0.60 16 26 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.04 1.18 8.12 -2.39 -0.02 1.16 16 30 H 0.10 3.07 8.11 -2.39 -0.02 3.05 16 31 H 0.10 2.97 4.14 -2.39 -0.01 2.96 16 32 H 0.02 0.96 6.54 -2.39 -0.02 0.95 16 33 H 0.05 2.24 7.48 -2.39 -0.02 2.23 16 34 H 0.27 15.97 8.31 -92.70 -0.77 15.20 16 35 H 0.12 3.91 7.27 -2.91 -0.02 3.89 16 36 H 0.41 4.12 9.06 -74.06 -0.67 3.44 16 37 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 38 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 39 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.10 1.92 8.05 -2.39 -0.02 1.91 16 41 H 0.04 1.38 7.24 -2.39 -0.02 1.36 16 Total: -1.00 -83.62 343.06 2.85 -80.77 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 0.32 Total: 14.77 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: 5.00 Total: 1.05 kcal Atomic # 7 Polarization: -86.07 SS G_CDS: -1.70 Total: -87.78 kcal Atomic # 8 Polarization: -52.91 SS G_CDS: -2.64 Total: -55.55 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.88 Total: 46.74 kcal Total: -83.62 2.85 -80.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394196034.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.313 kcal (2) G-P(sol) polarization free energy of solvation -83.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds