Wall clock time and date at job start Tue Mar 31 2020 07:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53011 * 109.47040 * 2 1 4 4 C 1.53001 * 109.47551 * 240.00254 * 2 1 3 5 5 C 1.50699 * 109.46968 * 59.99492 * 4 2 1 6 6 H 1.07997 * 120.00511 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99385 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00408 * 0.02562 * 7 5 4 9 9 Si 1.86810 * 119.99509 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47037 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46983 * 120.00241 * 9 7 5 12 12 H 1.48494 * 109.46947 * 239.99765 * 9 7 5 13 13 C 1.52995 * 109.47124 * 119.99651 * 2 1 3 14 14 N 1.46505 * 109.47499 * 300.00257 * 13 2 1 15 15 C 1.34774 * 119.99826 * 179.97438 * 14 13 2 16 16 O 1.21617 * 120.00188 * 0.02562 * 15 14 13 17 17 C 1.47243 * 119.99439 * 179.97438 * 15 14 13 18 18 C 1.40244 * 120.23712 * 269.99998 * 17 15 14 19 19 O 1.35655 * 120.12153 * 359.97438 * 18 17 15 20 20 C 1.38549 * 119.75570 * 180.25588 * 18 17 15 21 21 C 1.38244 * 120.23751 * 359.46668 * 20 18 17 22 22 C 1.38244 * 120.48071 * 0.51477 * 21 20 18 23 23 C 1.38542 * 120.23978 * 359.76584 * 22 21 20 24 24 O 1.35661 * 120.12423 * 179.97438 * 23 22 21 25 25 H 1.08993 * 109.47150 * 300.00320 * 1 2 3 26 26 H 1.08999 * 109.47064 * 60.00419 * 1 2 3 27 27 H 1.09001 * 109.46875 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46700 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46643 * 300.00206 * 3 2 1 30 30 H 1.09000 * 109.46758 * 59.99754 * 3 2 1 31 31 H 1.09001 * 109.47135 * 180.02562 * 4 2 1 32 32 H 1.09001 * 109.46472 * 299.99444 * 4 2 1 33 33 H 0.96998 * 120.00039 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.47517 * 180.02562 * 13 2 1 35 35 H 1.09001 * 109.47408 * 60.00245 * 13 2 1 36 36 H 0.96999 * 119.99458 * 0.02562 * 14 13 2 37 37 H 0.96700 * 114.00230 * 90.00054 * 19 18 17 38 38 H 1.08000 * 119.88334 * 179.70287 * 20 18 17 39 39 H 1.07992 * 119.75944 * 180.27906 * 21 20 18 40 40 H 1.08003 * 119.87991 * 179.73828 * 22 21 20 41 41 H 0.96696 * 114.00164 * 269.97533 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9171 0.8675 -2.3807 7 6 1.8705 -0.4822 -3.7319 8 7 2.6259 -1.5519 -3.8526 9 14 1.2483 0.3988 -5.2572 10 1 0.4247 1.5664 -4.8530 11 1 2.4036 0.8647 -6.0656 12 1 0.4228 -0.5340 -6.0655 13 6 2.0400 -0.7211 1.2492 14 7 1.5516 -0.0305 2.4455 15 6 1.8769 -0.4913 3.6695 16 8 2.5761 -1.4801 3.7811 17 6 1.3865 0.2031 4.8717 18 6 2.1411 1.2351 5.4484 19 8 3.3279 1.5983 4.9010 20 6 1.6727 1.8782 6.5827 21 6 0.4610 1.5135 7.1395 22 6 -0.2911 0.4980 6.5789 23 6 0.1611 -0.1624 5.4480 24 8 -0.5786 -1.1589 4.9001 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 3.1301 -0.7215 -1.2490 32 1 1.6768 -1.7489 -1.2492 33 1 2.8597 -1.8837 -4.7335 34 1 3.1300 -0.7208 1.2495 35 1 1.6767 -1.7488 1.2493 36 1 0.9936 0.7579 2.3564 37 1 3.2564 2.2928 4.2319 38 1 2.2544 2.6699 7.0313 39 1 0.1012 2.0231 8.0210 40 1 -1.2343 0.2181 7.0243 41 1 -0.3770 -2.0370 5.2512 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000436735409.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:56 Heat of formation + Delta-G solvation = -110.832950 kcal Electronic energy + Delta-G solvation = -23623.930598 eV Core-core repulsion = 20082.823987 eV Total energy + Delta-G solvation = -3541.106611 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.75702 -38.90889 -38.13522 -37.00409 -36.03467 -33.59176 -32.14553 -30.89067 -29.68699 -27.14524 -26.51652 -26.33531 -24.00081 -22.86837 -22.62466 -20.49148 -19.28371 -18.51441 -17.72701 -17.27909 -16.64728 -16.33698 -15.86901 -15.50184 -14.95847 -14.83114 -14.61900 -14.49127 -13.78086 -13.38957 -13.30360 -13.08968 -12.75625 -12.53218 -12.15117 -12.07184 -12.06367 -11.32316 -11.16768 -11.03386 -10.98763 -10.83851 -10.64845 -10.41661 -10.25223 -9.90815 -9.88380 -9.19227 -9.14501 -8.95872 -8.91620 -8.74658 -8.36454 -6.00211 -4.01494 0.68086 0.79142 2.70311 3.04350 3.29954 3.37801 3.39610 3.42719 3.59882 4.09553 4.44862 4.55921 4.70919 4.79251 4.98221 5.33035 5.35370 5.36026 5.50735 5.61980 5.74339 5.86311 5.87871 5.97816 6.16202 6.20771 6.22638 6.28612 6.38915 6.54555 6.62676 6.74732 7.05013 7.07365 7.11970 7.28124 7.34553 7.63894 7.69933 7.76063 7.98614 8.35072 8.41151 9.03538 9.61725 11.11296 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.028408 B = 0.003324 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.401657 B = 8420.472114 C = 8551.772446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.128 3.872 14 N -0.708 5.708 15 C 0.569 3.431 16 O -0.536 6.536 17 C -0.179 4.179 18 C 0.157 3.843 19 O -0.488 6.488 20 C -0.157 4.157 21 C -0.075 4.075 22 C -0.157 4.157 23 C 0.157 3.843 24 O -0.490 6.490 25 H 0.029 0.971 26 H 0.067 0.933 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.067 0.933 30 H 0.027 0.973 31 H 0.018 0.982 32 H 0.018 0.982 33 H 0.259 0.741 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.398 0.602 37 H 0.396 0.604 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.601 7.897 21.490 23.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.549 4.549 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.005 3.995 14 N -0.359 5.359 15 C 0.353 3.647 16 O -0.413 6.413 17 C -0.183 4.183 18 C 0.111 3.889 19 O -0.299 6.299 20 C -0.176 4.176 21 C -0.093 4.093 22 C -0.176 4.176 23 C 0.112 3.888 24 O -0.302 6.302 25 H 0.048 0.952 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.046 0.954 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.234 0.766 37 H 0.254 0.746 38 H 0.155 0.845 39 H 0.153 0.847 40 H 0.155 0.845 41 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -5.025 7.083 21.445 23.136 hybrid contribution -0.500 0.682 -1.061 1.357 sum -5.525 7.765 20.384 22.502 Atomic orbital electron populations 1.21757 0.95184 1.01257 1.00222 1.20910 0.95545 0.95822 0.94986 1.21765 1.00535 0.95922 1.00179 1.19093 0.96351 0.95250 0.89445 1.21218 1.31119 1.12051 0.90496 0.92195 1.25017 0.95316 0.95081 0.99096 1.69972 1.37029 1.23023 1.23339 0.86593 0.78599 0.79685 0.83453 1.19802 1.21139 1.21128 1.21682 0.98942 0.96141 0.82734 1.46174 1.52449 1.31763 1.05509 1.17755 0.79987 0.83995 0.82959 1.90813 1.37697 1.26057 1.86716 1.20811 0.95649 1.01792 1.00045 1.18251 0.84775 0.92822 0.93066 1.84800 1.25762 1.60350 1.59004 1.21395 0.97033 1.01776 0.97373 1.21001 0.93458 0.95736 0.99136 1.21401 1.01701 0.98850 0.95631 1.18257 0.87773 0.91426 0.91387 1.84740 1.61124 1.18286 1.66009 0.95230 0.91439 0.93311 0.93292 0.91364 0.95413 0.96327 0.96322 0.93086 0.91645 0.91695 0.76647 0.74599 0.84525 0.84704 0.84525 0.74305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.28 8.05 37.16 0.30 -1.98 16 2 C -0.07 -1.38 0.54 -154.50 -0.08 -1.46 16 3 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 4 C 0.04 0.89 4.04 -27.88 -0.11 0.77 16 5 C -0.51 -13.54 7.65 -34.44 -0.26 -13.81 16 6 H 0.06 1.53 5.68 -52.49 -0.30 1.23 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 9 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 10 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 C 0.13 2.31 4.56 -4.04 -0.02 2.29 16 14 N -0.71 -10.86 4.96 -61.44 -0.30 -11.16 16 15 C 0.57 9.27 6.32 -12.60 -0.08 9.19 16 16 O -0.54 -10.90 17.11 5.26 0.09 -10.81 16 17 C -0.18 -2.34 5.65 -104.73 -0.59 -2.93 16 18 C 0.16 1.77 6.71 -38.71 -0.26 1.51 16 19 O -0.49 -5.53 12.95 -18.66 -0.24 -5.78 16 20 C -0.16 -1.34 9.97 -39.46 -0.39 -1.73 16 21 C -0.08 -0.55 10.02 -39.58 -0.40 -0.94 16 22 C -0.16 -1.33 9.97 -39.47 -0.39 -1.73 16 23 C 0.16 1.77 6.72 -38.71 -0.26 1.51 16 24 O -0.49 -5.48 12.95 -18.68 -0.24 -5.72 16 25 H 0.03 0.44 6.86 -51.93 -0.36 0.09 16 26 H 0.07 1.29 6.62 -51.93 -0.34 0.95 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 30 H 0.03 0.38 6.86 -51.93 -0.36 0.03 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.40 5.34 6.15 -40.82 -0.25 5.09 16 37 H 0.40 2.75 9.06 45.56 0.41 3.17 16 38 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 39 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 40 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 41 H 0.40 3.02 9.06 45.56 0.41 3.43 16 LS Contribution 344.05 15.07 5.18 5.18 Total: -1.00 -34.44 344.05 -6.21 -40.65 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -4.06 Total: 6.91 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: -2.35 Total: -9.73 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 0.43 Total: -36.87 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -0.39 Total: -22.31 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.44 -6.21 -40.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436735409.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.183 kcal (2) G-P(sol) polarization free energy of solvation -34.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds